TCONS_00056780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056780
Unique NameTCONS_00056780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=transcript|length=2205bp
CACTCTAAAATTTgatgtcattcttttttttcagattttggcGCATTTGA
ACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATAT
TATTTTCTGACGCCACTCGtcactttttggttctttgtggTCTACGTCAC
CATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGagAATCCAA
AGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCtttgtatttgtt
tttgttgtttgggCACACGAGaatgtttGCGATTGGTTGTTTTCGAGAAT
TGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGC
GTATCCATTCAGGTCTCCACCGATATGCTGTAATATTCGGTATGCTTTGC
GGATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGA
TAATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGG
TTGTGGCACTGTGCGCCCTCCTGGGTTATGAGATACAAGCTTTTACATGT
CATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCC
GATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAA
GATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAACTTTTC
ATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTCACGT
TCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTCACAT
TCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGCTGAC
TTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGcttatcatttt
catcattttaatgTTTATTGTTTGGTGGCATAAAACACATGAAAAGAAAC
CCGTATTTTACGTTTGATGATTTGGTTGGTTGGTTCGTTTCAATCTTATT
CTCTGGCTTAGACGTGGGCAGAAAGTTGACAGTCTTTaattaaaaaagat
tgaaagaaagattGAATTGACgacaaaagagggcaatgcattgactttag
acagccaactttcTCTCCACTTTAATTCAAGAGGTAAGGTGAAAAGTGGC
CTGTCTAATAAACAGAGTTAACACTACTATGATTAGTTTGGGCTCGAGTC
TATCAATCATGCTTAAATTTGTGAAGTCATTGTATTGACGTGACAATACC
TTACTGTAATTATCGATtacgttttttagtttttgagaaGTTTGACTGAA
GTTCTTCACAACCGGGATATATCCCAACTTATCTTTCccgaaaatgtgaa
aatttgaCCCTTGTAGATTCAAACCTAGTCCCCTTCAGAatgattgataa
aaatattttgaaaatactcGTGGATTTTATGGTCCTTGACTTGGAAATGT
TACTCAACTAAAACCGATACCTAGTTTTGAAAGATTCGCATTTTAACTAC
GGGTAGTAAGGGCAAAGCTTCGTTGGGGAAAAGTCCCGACGTGCCTCTGA
TGTAGATTGTTCAGATATTGTCAATTTCTTTTGAGGAAAAGTCCCTAGAT
AAAATTAAGTCTTATCCTGTTCATGGCAGTGCATGGCGAAAAAGTGTGAA
GCAAGGAACTACCATTTAATGACTAAAAAAACTCTGTAAAATAGCTATCC
CTCGTCACATCATGAAGTCAAattccttttattttttaaaaaccaCTTTT
CGTCCGTTTTCAACTTAGAATAGACAAAAATGTCAACCCTATATTCATTC
ATTCTGAGAGCCATGTACTGTTATGTTTTATGTTTGAATTGGCAAATcat
tttattattcaaaatgCAGAATTTTATTCACATGTAAATACAAAGATGCA
ATTGTGTATTGCGTACGTAACAattaaattactttttaattttcattgtt
aATGAACTATagttattttgtgtttttttttttgtagatttttaaatgaa
atagacgatttaatttttgtgttaaatttaaatttacctCGATTAGAATT
TCTATTGATTTAACTCCGCGAATTTAAGGCATAAAAGGCATAAAAGCTTG
TTTTCGGAAAGTACTTAACAGTTAAACTGTTCATCACGAAATCATATTCC
GACTTGTGCCGACCAATTgcgattctattcagcgcgcaatcaacgcaaag
aaaag
Run BLAST on NCBI

protein sequence of TCONS_00056780-protein

>TCONS_00056780-protein ID=TCONS_00056780-protein|Name=TCONS_00056780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
TLKFDVILFFQILAHLNVFCVLLCLAMGHSYQYYFLTPLVTFWFFVVYVT
MALFPRVTSNIVEENPKRLFLMAGKLVILFVFVFVVWAHENVCDWLFSRI
VIKELFVDVNGSVEKWRIHSGLHRYAVIFGMLCGYIYVNLKRLDLIKDTD
NDGNILPSTKYTIATMVVALCALLGYEIQAFTCHSKSLCDHTHSIASCVP
ILAFVLLRNLPGFLRTRYSLLFAWIGDMSLELFIGQYHIWLSNDGFGVHV
LIPGFPTLNAIVTTFTFVCTIHEVKQLCSTLADLLVTKDVRIMLRRLIIF
IILMFIVWWHKTHEKKPVFYV
Run BLAST on NCBI

transcript from alignment at scaffold_282:316488..323215-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=transcript|length=6728bp|location=Sequence derived from alignment at scaffold_282:316488..323215- (Clytia hemisphaerica)
CACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGA
ACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATAT
TATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCAC
CATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGGTACATACT
TCATCTGTTACTTTTAAAACAGGAAAACTTATTCGTGGAGAATTCTTCGT
CGTTTAAAATTTAATTCTTTGTCACTCTTTTGAAAATCTTTGTCACAGTT
TCCTTGAAGTTGACCAGAAAGTGTTTTCGCCTAAGAAACTTCTTGGTTAA
AAGTTTTATTACTTTTCCCCGACAATCTCCACTTCCCCCTGTACGCATTT
TTGGACCTACCTCCGGGTGCCCCGGTGGAGGTTCTATAAATTAACCCATG
TCCGTTCGTTCGTTCGTTCGTCCGTCTGTCTGTTACCAGCTTTTCTCAGG
ATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCA
ATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAGAAAATTTATTTGGGC
AAATTTTGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTCTACA
AAATCCTGTCATATCTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAA
GATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTATTCG
CCTTAAAAAACGGATTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAA
GATGGAGGGCAAGATTCTTTAAAGAATGGCTGAAGTGGTTTTTCCTGGAA
AATTCTTATTCGCCCTAAAAGACGGATTTTCGTATTTTGAGGAAATTCCC
TTTCCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTT
TCTGATTTTTTGCACAATGATGCAAAATGACAGCACGAACTTTTTTTCAA
AAGGCACGAACTTTTTTTTCAAAGGCACGAAGGGCACGAAGGCACGAAAG
GCACGAACAAAATCACACTCTTGCACAATGATGCAAAATGACAATGCCCA
AAATGGGACGGAGCCAGATTTTCAAGGAAAATTTTTTTGGGCAAATTTGG
GCCAAAAACAGCTTAAATGGTTTTTTGGGTCTGAATGGTTTAAGTGATTT
TCGTATTTGGGGACATTCCTTTTTACCATTTTACATTATTCAACACACAA
GCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCAATTTTTTCT
TATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTT
GTTTGTTTTTATGTGCTGTTTTATAACCTATCTTACCCACTGACGTAATA
GCGAATTCAAGTCTAAAAATTGTAAACCGAACAAAGAGCGGTTCATAGAG
CCCCATGTGCTCGCCTGCGAACTTGTATAGCCTTAATGTTTATTTATTAA
GTCTATTTTACTAATCTTTCTGAAGCGGAGACAGTTTGTTTTAAATTTGT
CTAGACGTGACCGATTGAGCCTAGCGGTTTTGCAGATCAAAACTGCGGGT
TATTCTAAATCGTCAGTCACTCCATCGTCCTAAAAAAACAGATACATATG
TCTTACTAATCTTTTTACTTACTGAAGTGTAGCCCAAGACAGGTTTTCTG
TACTCGTTAGTGTTCTCCTGTCTCCATTTCACAGGTGGCTGTTTTTAAAT
GGTGTAGTATTCTAAATTCTTGATAAGTGATTTCTAGACTTTTGTTTCTT
CTTTTTTCAGAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGT
CATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGGTATGATTCC
TTTTCAATTTAAAGGTTACGTTGCAGACCTCAGGTTTTTCATGTCACGTA
GCTCTCAACACTAGCGAGTTTATGTATCTGGAATTCTCTACGGCTACGGT
TGAAGTGGCGAGGGTAATGGCGAGTAAGGCAAGTAATGGCGGGTGAAAGC
AAGTTCGATATTTGACGTACGACATTATGTCGACTTTGCTTCTACGGTTT
TTTGGCGTTTTTCCCGTACAAAGCAAAGTAGACAACGACATGTCGCCTTT
GGTGACGACCCGTACGGAAAGCCCCGCAACCGTAGCCGTAGAATATCTCC
GATACATAATCTCGCTATTGCCGAGTTTATGTATGTGTCTTTTTTAGCGA
TGGAGACGGTAAGGTTCTAATTTGTCTATATCCTACCCAGCCGAGGACGA
AGGTAAATCAGTATTTTTACCGTCCTCGATTTTGCGGGTCAGAACTGCGG
GTTATTCCTAATCGCTTTAGTCACTTTACCGTCCTCAAAAGTGCATATAC
ATAAACTCGCTATTATGAAAGCAAAGGTTCGATTTGCGTAAGGGGTCGCC
TCTACAGAGAACGTTTGCTTCCATAATTGCGGAACTTAACCAAATATGAA
AAACCTTTATAAGAGGTTCGAAACACAACGATACAACACTGGAAAAAGAT
TCCATTTGCCCTTGAGAAACGTTTTGAAGGAGAAAATTCCGATTGTTTTT
TTTTCAAACCTTCATAATCAACTTTCGGCTTTGTAAATCCATTCTCTGAT
AATTTCTTTGTTTCATTTTGAAGAATGTTTGCGATTGGTTGTTTTCGAGA
ATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATG
GCGTATCCATTCAGGTCTCCACCGATATGTAAGTTTCCTTTCAAAGAAAG
AATTTTCAACGTTCAGGGAAAAGTCCCTGATCTTACCTATTTTCATCAAA
ATGTGAGTCTTTTTTCAGTTTTGCACTTTTTTTGCACTTTTTTGAAAAAT
ATTCAGAATTTTAAGCGAATTTCATGCCTCTTGGTTATAACTTATCCTTA
TAATTTCAAAACATAACTGAAAAAAAATTATATTTCAAGTTAAATCAATC
ACAAGTGCCTTGCTCTTGTAATCGATAAACATTTTTACCTTATTTTTGTA
ATTTCCAGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCAAT
CTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATATT
ACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGCCC
TCCTGGTGAGTTTGTGCAGCCTTTTTCTCTGAACGTTTCTAACAAGAAGG
AAATCAACTCGTCATCTCTTGATTTTCAGTACATTCGAAAACTGAAAAGT
TAAATTTCTATTAAGAGCCATTTCAATGTTGAAGGGAAAAATGAGAACAA
CATTTGTAACTTTTTAAGTAAAAGCTTTTCGGTGTATAACCATCACCAGT
GCTATTAGATAGTAGCTTTTGTTGTTTTCATTTCTTACCTTTTTCGAAAA
ATGCTTTTTGCCTTTCAAAGTACAAATGACTGGTTCCTGTTACGTTTTGA
GCTTCATTGTCAGATCCCTCGTAAAACTTTGTGAAGGCCCTCACTGGGAA
GAATTAGTACTAGTACACACTTTTTGAATTCTTTGAAAATAAATCTATGT
CTTTCAACTTTTAGGGTTATGAGATACAAGCTTTTACATGTCATTCAAAA
AGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGTAGGTTA
TTGTTCTTTAGTAAGGTGAAATCTATATTGTTTGACCTTGTTCGCTTTTT
CTGCTTATTTCTACTAATACTTTGTTTCAGTATTAAGGTCCTTTTAGAAC
TGTTGACCTAGGGGTTCTAAAATTCATTTCTCTGAGTTTTTCAGTATCAA
ATTTAGTCTCCATGGATAACGTGTTAATTTGACAATGAAAAATGAACTGT
TGGCAAAATGCAGCATCAATTTTTTTTCATCAATATTCTATTCGAATCTT
TTAGATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGA
CAAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGTA
AGTGAAACACTTTCGTCTTTAGAATAAGTTTTATATCTGCCCCTTTATCC
GTGATGTAGTGTTACTTACTTGGTAGAGGGTAACATAATGAATGAGCGAA
ATGATATTAAGTATTGGACGAGGAACAACTTTCTTTCAACCTATGATACG
ACAGATCTGCCAAATGAACTGCCCATGTGTATACTTAATCATTACAATAT
ACAAGGGAGGATTCTTGAAAGTGGTATCGGTGTTTAGTTTTCTTTTCACC
TGCAAAGGCGAAGATGTTTTATCTTGAAAACCTTTTTTTTAGAATTTTTT
CTTTTCAACTGTAGTTTAACTTTGAAATCTTAATCATTCGATATTCACAT
TTCTACAATAACATTTCTTCCCTGCTCACGAGATTTTTTCTGATAAATGT
GTTATTATTTTTCTTAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGC
AATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAA
CGCCATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAAC
AACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATC
ATGCTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTG
GCATAAAACACATGAAAAGAAACCCGTATTTTACGTTTGATGATTTGGTT
GGTTGGTTCGTTTCAATCTTATTCTCTGGCTTAGACGTGGGCAGAAAGTT
GACAGTCTTTAATTAAAAAAGATTGAAAGAAAGATTGAATTGACGACAAA
AGAGGGCAATGCATTGACTTTAGACAGCCAACTTTCTCTCCACTTTAATT
CAAGAGGTAAGGTGAAAAGTGGCCTGTCTAATAAACAGAGTTAACACTAC
TATGATTAGTTTGGGCTCGAGTCTATCAATCATGCTTAAATTTGTGAAGT
CATTGTATTGACGTGACAATACCTTACTGTAATTATCGATTACGTTTTTT
AGTTTTTGAGAAGTTTGACTGAAGTTCTTCACAACCGGGATATATCCCAA
CTTATCTTTCCCGAAAATGTGAAAATTTGACCCTTGTAGATTCAAACCTA
GTCCCCTTCAGAATGATTGATAAAAATATTTTGAAAATACTCGTGGATTT
TATGGTCCTTGACTTGGAAATGTTACTCAACTAAAACCGATACCTAGTTT
TGAAAGATTCGCATTTTAACTACGGGTAGTAAGGGCAAAGCTTCGTTGGG
GAAAAGTCCCGACGTGCCTCTGATGTAGATTGTTCAGATATTGTCAATTT
CTTTTGAGGAAAAGTCCCTAGATAAAATTAAGTCTTATCCTGTTCATGGC
AGTGCATGGCGAAAAAGTGTGAAGCAAGGAACTACCATTTAATGACTAAA
AAAACTCTGTAAAATAGCTATCCCTCGTCACATCATGAAGTCAAATTCCT
TTTATTTTTTAAAAACCACTTTTCGTCCGTTTTCAACTTAGAATAGACAA
AAATGTCAACCCTATATTCATTCATTCTGAGAGCCATGTACTGTTATGTT
TTATGTTTGAATTGGCAAATCATTTTATTATTCAAAATGCAGAATTTTAT
TCACATGTAAATACAAAGATGCAATTGTGTATTGCGTACGTAACAATTAA
ATTACTTTTTAATTTTCATTGTTAATGAACTATAGTTATTTTGTGTTTTT
TTTTTTGTAGATTTTTAAATGAAATAGACGATTTAATTTTTGTGTTAAAT
TTAAATTTACCTCGATTAGAATTTCTATTGATTTAACTCCGCGAATTTAA
GGCATAAAAGGCATAAAAGCTTGTTTTCGGAAAGTACTTAACAGTTAAAC
TGTTCATCACGAAATCATATTCCGACTTGTGCCGACCAATTGCGATTCTA
TTCAGCGCGCAATCAACGCAAAGAAAAG

Coding sequence (CDS) from alignment at scaffold_282:316488..323215-

>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=CDS|length=6762bp|location=Sequence derived from alignment at scaffold_282:316488..323215- (Clytia hemisphaerica)
CTTTTCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGT
TCACGTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGT
TCACATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTT
GCTGACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTAT
CATTTTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAA
AGAAACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAAT
TTACCAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGG
TGACATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAA
AAAGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTA
ATATTCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGA
CCTGATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGT
ATACTATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGC
GATTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAA
TGGATCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAA
TCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTAT
TTGTTTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTT
TTTTTTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTT
GGCGATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTT
TTTGGTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACC
AGCAATATCGTCGAAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGCA
ATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAAC
GCCATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAACA
ACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATCA
TGCTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTGG
CATAAAACACATGAAAAGAAACCCGTATTTTACGTTTGAATTTTGGCATT
TGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAAGATACAGTTTAC
TTTTCGCCTGGATTGGTGACATGTCACTCGAAGGTTATGAGATACAAGCT
TTTACATGTCATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATC
TTGTGTGCCGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCA
ATCTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATA
TTACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGC
CCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGAATTGTCATCAAAGAGC
TCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGCGTATCCATTCAGGT
CTCCACCGATATAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTG
GTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGACTCTAAA
ATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGAACGTATTTT
GTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATATTATTTTCTG
ACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCACCATGGCATT
GTTTCCAAGGGTTACCAGCAATATCGTCGAAGCTTTTCATTGGTCAGTAC
CATATTTGGTTGAGCAATGATGGATTCGGTGTTCACGTTCTCATCCCTGG
TTTTCCCACACTCAACGCCATCGTTACCACGTTCACATTCGTGTGTACGA
TACACGAAGTCAAACAACTCTGCTCAACACTTGCTGACTTGTTGGTCACA
AAGGATGTCCGGATCATGCTGAGAAGGCTTATCATTTTCATCATTTTAAT
GTTTATTGTTTGGTGGCATAAAACACATGAAAAGAAACCCGTATTTTACG
TTTGAATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGG
ACAAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGG
TTATGAGATACAAGCTTTTACATGTCATTCAAAAAGCCTTTGTGATCACA
CTCACTCCATAGCATCTTGTGTGCCGGCTGTAATATTCGGTATGCTTTGC
GGATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGA
TAATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGG
TTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGA
ATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATG
GCGTATCCATTCAGGTCTCCACCGATATAGAATCCAAAGCGGTTGTTTTT
GATGGCCGGAAAATTGGTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGG
CACACGAGACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCG
CATTTGAACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTA
TCAATATTATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCT
ACGTCACCATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGCT
TTTCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTC
ACGTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTC
ACATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGC
TGACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTATCA
TTTTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAAAG
AAACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAATTT
ACCAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGGTG
ACATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAAAA
AGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTAAT
ATTCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGACC
TGATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGTAT
ACTATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGA
TTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAATG
GATCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAATC
CAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTATTT
GTTTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTTTT
TTTTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTTGG
CGATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTTTT
TGGTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACCAG
CAATATCGTCGAAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGCAAT
GATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAACGC
CATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAACAAC
TCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATCATG
CTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTGGCA
TAAAACACATGAAAAGAAACCCGTATTTTACGTTTGAATTTTGGCATTTG
TGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAAGATACAGTTTACTT
TTCGCCTGGATTGGTGACATGTCACTCGAAGGTTATGAGATACAAGCTTT
TACATGTCATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATCTT
GTGTGCCGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCAAT
CTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATATT
ACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGCCC
TCCTGAATGTTTGCGATTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTC
TTTGTAGATGTCAATGGATCTGTTGAAAAATGGCGTATCCATTCAGGTCT
CCACCGATATAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGT
CATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGACTCTAAAAT
TTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGAACGTATTTTGT
GTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATATTATTTTCTGAC
GCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCACCATGGCATTGT
TTCCAAGGGTTACCAGCAATATCGTCGAAGCTTTTCATTGGTCAGTACCA
TATTTGGTTGAGCAATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTT
TTCCCACACTCAACGCCATCGTTACCACGTTCACATTCGTGTGTACGATA
CACGAAGTCAAACAACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAA
GGATGTCCGGATCATGCTGAGAAGGCTTATCATTTTCATCATTTTAATGT
TTATTGTTTGGTGGCATAAAACACATGAAAAGAAACCCGTATTTTACGTT
TGAATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGAC
AAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGGTT
ATGAGATACAAGCTTTTACATGTCATTCAAAAAGCCTTTGTGATCACACT
CACTCCATAGCATCTTGTGTGCCGGCTGTAATATTCGGTATGCTTTGCGG
ATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGATA
ATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGGTT
GTGGCACTGTGCGCCCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGAAT
TGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGC
GTATCCATTCAGGTCTCCACCGATATAGAATCCAAAGCGGTTGTTTTTGA
TGGCCGGAAAATTGGTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCA
CACGAGACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCA
TTTGAACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATC
AATATTATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTAC
GTCACCATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGCTTT
TCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTCAC
GTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTCAC
ATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGCTG
ACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTATCATT
TTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAAAGAA
ACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAATTTAC
CAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGGTGAC
ATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAAAAAG
CCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTAATAT
TCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGACCTG
ATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGTATAC
TATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGATT
GGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGA
TCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAATCCA
AAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTATTTGT
TTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTTTTTT
TTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTTGGCG
ATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTTTTTG
GTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACCAGCA
ATATCGTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035763XLOC_035763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056780-proteinTCONS_00056780-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056780-exon-scaffold_282-1575043694:323025..323215TCONS_00056780-exon-scaffold_282-1575043694:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:320576..320655TCONS_00056780-exon-scaffold_282-1575043694:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:319688..319792TCONS_00056780-exon-scaffold_282-1575043694:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:319261..319407TCONS_00056780-exon-scaffold_282-1575043694:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:318774..318851TCONS_00056780-exon-scaffold_282-1575043694:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:318419..318511TCONS_00056780-exon-scaffold_282-1575043694:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:316488..317998TCONS_00056780-exon-scaffold_282-1575043694:316488..317998Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:323025..323215TCONS_00056780-exon-scaffold_282-1510915933:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:320576..320655TCONS_00056780-exon-scaffold_282-1510915933:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:319688..319792TCONS_00056780-exon-scaffold_282-1510915933:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:319261..319407TCONS_00056780-exon-scaffold_282-1510915933:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:318774..318851TCONS_00056780-exon-scaffold_282-1510915933:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:318419..318511TCONS_00056780-exon-scaffold_282-1510915933:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:316488..317998TCONS_00056780-exon-scaffold_282-1510915933:316488..317998Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:323025..323215TCONS_00056780-exon-scaffold_282-1491911889:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:320576..320655TCONS_00056780-exon-scaffold_282-1491911889:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:319688..319792TCONS_00056780-exon-scaffold_282-1491911889:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:319261..319407TCONS_00056780-exon-scaffold_282-1491911889:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:318774..318851TCONS_00056780-exon-scaffold_282-1491911889:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:318419..318511TCONS_00056780-exon-scaffold_282-1491911889:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:316488..317998TCONS_00056780-exon-scaffold_282-1491911889:316488..317998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:316488..323215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.59894	5.29952	2.81752	2.7565	20.8777	15.073	20.5666	21.1797	14.8134	15.6957	17.5036	13.8027	13.1334	14.2529	11.4048	13.7123	11.1816	11.3924	10.8266	12.7726	10.3793	9.22902	8.25382	9.44938	23.1484	23.3674	8.45717	6.81481	9.68656	7.29628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012419Cas1_AcylTrans_dom
Blast
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BLAST of TCONS_00056780 vs. Swiss-Prot (Human)
Match: CASD1 (N-acetylneuraminate 9-O-acetyltransferase OS=Homo sapiens GN=CASD1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.340e-53
Identity = 112/279 (40.14%), Postives = 168/279 (60.22%), Query Frame = 2 
Query:   32 QILAHLNVFCVLLCLAMGHSYQYYFLTPLVTFWFFVVYVTMALFPRVTSNIVEENPKRLFLMAGKLVILXXXXXXXWAHENVCDWLFSRIVIKELFVDVNGSVEKWRIHSGLHRYAVIFGMLCGYIYVNLKRLDLIKDTDNDGNILPSTKYTIATMVVALCALLGYEIQAFTCHSKSLCDHTHSIASCVPILAFVLLRNLPGFLRTRYSLLFAWIGDMSLELFIGQYHIWLSNDGFGVHVLIPGFPTLNAIVTTFTFVCTIHEVKQLCSTLADLLVTKD 868
            Q+L  LN   V+LC+ M   YQ+Y+  PLVT WF V+YVT+AL+P++       N    F +  KL  L +F+  +   +   + +FS   + + F ++ G+V +W     L RY V  GML  +IY+ L++  ++  ++  G  L S K +   + +++ + L Y I A +C +K+ C+  H   S V ILAF+L+RN+PG+ R+ YS  FAW G +SLELFI QYHIWL+ D  G+ VLIPG P LN IV+TF FVC  HE+ Q+ + LA +++ KD
Sbjct:  492 QVLFRLNFLVVVLCIVMDRPYQFYYFVPLVTVWFMVIYVTLALWPQIIQKKANGNCFWHFGLLLKLGFLLLFICFLAYSQGAFEKIFSLWPLSKCF-ELKGNVYEWWFRWRLDRYVVFHGMLFAFIYLALQKRQIL--SEGKGEPLFSNKISNFLLFISVVSFLTYSIWASSCKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFFAWFGKISLELFICQYHIWLAADTRGILVLIPGNPMLNIIVSTFIFVCVAHEISQITNDLAQIIIPKD 767
The following BLAST results are available for this feature:
BLAST of TCONS_00056780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASD13.340e-5340.14N-acetylneuraminate 9-O-acetyltransferase OS=Homo ... [more]
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