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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056804 ID=TCONS_00056804|Name=TCONS_00056804|organism=Clytia hemisphaerica|type=transcript|length=1027bp
ctttcaaaatatttgtagCATGAACAGAGAAAAAATTGGAATAATAATTA
TTCTTACTCTTACGTGTAAGAGTAACTATGAgatttttgtatgttttata
TCTTTGAAGGAAGGTGTCTAAgtgttttttgaatacttctttggGGCAGT
TTGTCAAATCTCTTATTGGTCTGGGAAGGGTGTTGAATAATTGAGGGCCT
TCTTGGGNNNNCCTTCTTGGGAAAGACTTCCCctccagatatttttgtgt
ttgatattgacagcttttagaTTGCAAATTCTCCCCAATCTCTGATTTAT
ATGGCAGGAAATGCATCCTTTACTTTCGTCATAATCAAAATTCGGGACGT
TGCCTTCAATGACGTTCCAGGTATAAATTATTTGATACTGCTCTCTCCGT
CTTTCAAGGCTATACAGttttaatgatttgagtttttccCGATAATTGAG
ATGTCTGAGGGATGGAATTCCATGTAAAAATGATTTCTGAACTTCTTCCA
GTTGCTGGACAAGACCACGCTTCCAGGGAGACCAGAGTTGAGAGCAGTAG
TCCAAATGAGGGATGGCTAGTGTTTTCCATAAAGTTAACATGGTTTCAAT
TTCCCTTGATTTGAATTTGCGGTATATCCATGCActtatatttttcactt
ttttgatttgttcttgGATATGTTTCTCATAAGTCAACTGAGTGTCTAGG
GTGACTCCAAGGTCTTTAACTTCGTCTTTATTTTCGATCAACGTTGCTGT
GTCAGTAAAATAGCGAGAACTTTGCTTCAGAGCGTCGTTTTTCTCGTAGA
CAAGGTGCTCAAATTTAAGACCATTCAGCTGCATGTTGCTGTCTTCTGTC
CACTTATAGACAGTGTCTAGATCATTTTGTAGATGATAAACATCCTCCAG
TTTggatattttttcatcaaacgaGTGTCGTCATTNTGGATCAGTCTTTC
GGTGTGTTGAAGCAATTGACTAAGACATGAGCGGCCTTTCCTAAAGCCAT
GTTGATTATTGTTATACAGATTGTTTT Run BLAST on NCBI protein sequence of TCONS_00056804-protein >TCONS_00056804-protein ID=TCONS_00056804-protein|Name=TCONS_00056804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MQLNGLKFEHLVYEKNDALKQSSRYFTDTATLIENKDEVKDLGVTLDTQL
TYEKHIQEQIKKVKNISAWIYRKFKSREIETMLTLWKTLAIPHLDYCSQL
WSPWKRGLVQQLEEVQKSFLHGIPSLRHLNYREKLKSLKLYSLERRREQY
QIIYTWNVIEGNVPNFDYDESKGCISCHINQRLGRICNLKAVNIKHKNIW
RGSLSQEXXPKKALNYSTPFPDQ Run BLAST on NCBI transcript from alignment at scaffold_282:336566..337592 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056804 ID=TCONS_00056804|Name=TCONS_00056804|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at scaffold_282:336566..337592 (Clytia hemisphaerica)
AAAACAATCTGTATAACAATAATCAACATGGCTTTAGGAAAGGCCGCTCA
TGTCTTAGTCAATTGCTTCAACACACCGAAAGACTGATCCANAATGACGA
CACtcgtttgatgaaaaaatatccAAACTGGAGGATGTTTATCATCTACA
AAATGATCTAGACACTGTCTATAAGTGGACAGAAGACAGCAACATGCAGC
TGAATGGTCTTAAATTTGAGCACCTTGTCTACGAGAAAAACGACGCTCTG
AAGCAAAGTTCTCGCTATTTTACTGACACAGCAACGTTGATCGAAAATAA
AGACGAAGTTAAAGACCTTGGAGTCACCCTAGACACTCAGTTGACTTATG
AGAAACATATCcaagaacaaatcaaaaaagtgaaaaatataagTGCATGG
ATATACCGCAAATTCAAATCAAGGGAAATTGAAACCATGTTAACTTTATG
GAAAACACTAGCCATCCCTCATTTGGACTACTGCTCTCAACTCTGGTCTC
CCTGGAAGCGTGGTCTTGTCCAGCAACTGGAAGAAGTTCAGAAATCATTT
TTACATGGAATTCCATCCCTCAGACATCTCAATTATCGggaaaaactcaa
atcattaaaaCTGTATAGCCTTGAAAGACGGAGAGAGCAGTATCAAATAA
TTTATACCTGGAACGTCATTGAAGGCAACGTCCCGAATTTTGATTATGAC
GAAAGTAAAGGATGCATTTCCTGCCATATAAATCAGAGATTGGGGAGAAT
TTGCAAtctaaaagctgtcaatatcaaacacaaaaatatctggagGGGAA
GTCTTTCCCAAGAAGGNNNNCCCAAGAAGGCCCTCAATTATTCAACACCC
TTCCCAGACCAATAAGAGATTTGACAAACTGCCccaaagaagtattcaaa
aaacacTTAGACACCTTCCTTCAAAGAtataaaacatacaaaaatcTCAT
AGTTACTCTTACACGTAAGAGTAAGAATAATTATTATTCCAATTTTTTCT
CTGTTCATGctacaaatattttgaaag Coding sequence (CDS) from alignment at scaffold_282:336566..337592 >TCONS_00056804 ID=TCONS_00056804|Name=TCONS_00056804|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_282:336566..337592 (Clytia hemisphaerica)
ATGCAGCTGAATGGTCTTAAATTTGAGCACCTTGTCTACGAGAAAAACGA
CGCTCTGAAGCAAAGTTCTCGCTATTTTACTGACACAGCAACGTTGATCG
AAAATAAAGACGAAGTTAAAGACCTTGGAGTCACCCTAGACACTCAGTTG
ACTTATGAGAAACATATCcaagaacaaatcaaaaaagtgaaaaatataag
TGCATGGATATACCGCAAATTCAAATCAAGGGAAATTGAAACCATGTTAA
CTTTATGGAAAACACTAGCCATCCCTCATTTGGACTACTGCTCTCAACTC
TGGTCTCCCTGGAAGCGTGGTCTTGTCCAGCAACTGGAAGAAGTTCAGAA
ATCATTTTTACATGGAATTCCATCCCTCAGACATCTCAATTATCGggaaa
aactcaaatcattaaaaCTGTATAGCCTTGAAAGACGGAGAGAGCAGTAT
CAAATAATTTATACCTGGAACGTCATTGAAGGCAACGTCCCGAATTTTGA
TTATGACGAAAGTAAAGGATGCATTTCCTGCCATATAAATCAGAGATTGG
GGAGAATTTGCAAtctaaaagctgtcaatatcaaacacaaaaatatctgg
agGGGAAGTCTTTCCCAAGAAGGNNNNCCCAAGAAGGCCCTCAATTATTC
AACACCCTTCCCAGACCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056804-exon-scaffold_282-1491911889:336566..337592 | TCONS_00056804-exon-scaffold_282-1491911889:336566..337592 | Clytia hemisphaerica | exon |
| TCONS_00056804-exon-scaffold_282-1510915933:336566..337592 | TCONS_00056804-exon-scaffold_282-1510915933:336566..337592 | Clytia hemisphaerica | exon |
| TCONS_00056804-exon-scaffold_282-1575043694:336566..337592 | TCONS_00056804-exon-scaffold_282-1575043694:336566..337592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:336566..337592 . |
Blast
The following BLAST results are available for this feature:
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