TCONS_00058377 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058377
Unique Name	TCONS_00058377
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	858

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_31:195..3520+

transcript sequence

>TCONS_00058377 ID=TCONS_00058377|Name=TCONS_00058377|organism=Clytia hemisphaerica|type=transcript|length=858bp
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGA
GTCGACTGACTCGGTCACAACCAGGGAACCAGGAATTCGAAAACGTGGCA
AAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAAacAACAATTCAATG
AAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTACGGGATG
TGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTGGGTGCAATGTG
ATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGG
ACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAG
AACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTT
ACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTT
GCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCT
TGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTC
TTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTA
ATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAA
TATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttca
aatattttgttagctttttcctttgttgccatcaaaagataaaaatcaat
ttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggtttg
agcaaaac

Run BLAST on NCBI

transcript from alignment at scaffold_31:195..3520+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058377 ID=TCONS_00058377|Name=TCONS_00058377|organism=Clytia hemisphaerica|type=transcript|length=3326bp|location=Sequence derived from alignment at scaffold_31:195..3520+ (Clytia hemisphaerica)
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGTTCt
ctttttctattgttatttttcGAAGTTTATtgattatattatttttatct
ACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATAT
GACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGA
AAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaa
tctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTccat
tgttatttttcattcacTTTGAAGTTTATtgattatattatttttatctA
CTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATG
ACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAA
GATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctt
ttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgt
tatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTACTT
AGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACA
GAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctttta
caaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgttat
ttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGA
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttgaa
aacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAACT
TGAATTTcttgggtcatttattaaatttggttcattggatcaaaagttat
cctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttgaaa
atcgacctatcaaatttttattctgaaattttcagtagcgACAGCTTTTG
CACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaaac
ttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTGTA
AAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaagaga
gaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAAAcg
atttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAAGA
TGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTTTT
TTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcgca
tctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAATTT
TCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgttttta
ttattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCCGA
ATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACATC
TCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGG
CGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGTCC
AGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTTAT
ATCTTAAACTACAGGTacatgaaattttattttcaaaactttttagatAT
AATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCATT
TTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTAGT
ATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaattc
tcttttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaaaa
gaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAA
CTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCAAA
AGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTAAA
GCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAATGA
CTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTCTC
AATCTCAATTACTctaataatttaattttgaattttgcaaaaaattttca
CCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaattt
tatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCTTT
TCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATCCA
GAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAGAT
ATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTATT
ATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGT
TCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAA
TATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATA
AAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTAT
ATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAAT
AACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaa
acaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCAC
GTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAG
GAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGT
CCGgaagcttatttttcaaatattttgttagctttttcctttgttgccat
caaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtact
cctcttgggattggtttgagcaaaac

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036772	XLOC_036772	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:195..3520 +

Expression

No biomaterial libraries express this feature.

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058377 vs. Swiss-Prot (Human)

BLAST of TCONS_00058377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058377 (transcript) - C. hemisphaerica