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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056809 ID=TCONS_00056809|Name=TCONS_00056809|organism=Clytia hemisphaerica|type=transcript|length=1873bp
CACCCCCAGTTAAGAAAACCACGAAATCTCACAAATAGATAAAGGGTACC
AAGGTTTAACGTCCTAAGTTAAATAAAACCAACGAAAAATGACCCAGTTG
ctcatttctaaattttatacattttttgtcttcaatgcTTTTAATAAATA
CTTTCCCTTTTGATTTGGTAAGTTAGGacagattaaaaaaattaatcgtg
GTTTACTTACattcttaaaaagaaaattcatcATATTTCATTCAGTATAG
CATTATGTCAAAAGGTATAAAAAAGATTATGTCTGATATGTTTgatggtt
tttccaaaattgtcgTAGTTAGCCAGGAGTCTAggaagtttttaaaaata
ttgcttCACCGAAGTTGAATATTGAGAAAGATAGACAGACAAACGGATAG
TTAGACAGGCTAAAGGAAACATTCAAACCACACCCGATCTAACTGTACAT
TTGAGAATTGATTTTTAAGAGGgaagaattttaagttttaacaATCTAGC
TTTTATTGTGGTATCACAACTTTTCACCAACAAGTGCAATCAAGTAGATG
TTAGggaagtgacgaaaatgccagAAGACATTCTAGGGGTGCATGGAATT
ATACATTGTTTGAAATAGATAGTGGGCAAATGTCGTTAACTATATACTAC
CAAGTTCCGCGTTTAATATTTCTGTCGATTGGTTAATTGATTGGATGACT
GAATACGAATCTGATGATTGGTGTAATGAGAAAAAATGTGTAAGGCGAAA
ACAAAAGGAAACATTAGCGAGACAAAGCATTTCTTTTAATCGCGGTCTAT
TTTTAAGTTATTGTTCAACGATAAAAAGATGTAAGCTGGTAATTGCGGAG
AATAAAGCATTCTAGTATCCTCTCTACTTGTCATGCGCCTCCTCGATACT
ATTGATCTCACAAATCCTTTTGGCATATCCTGCTATTACAATTAAAGCAA
AGAATATACATgcaatttatttataagaaaattttgacaaaaacaaAAGC
TTCAGCTTTTGACCAAACCTAAGAGCTAATTAAGGATGTGTCGGAAATGT
CGCAAACTTGTCATAAGCGATTAAAATATAGAACGTTTGCATACTTGaag
aatcttaaaatattttagctcaaaaatcattgaaaataagaacagttatt
tttaaatttgctaATTCTTACACAAGAATAAGCTAGAATTCCTTTTTACA
TAAGAACTGTTATGTAGATACTAAATTCTCCTTCAAGGGAAAGAATGCTT
ACCAGACTTCCGAAATGTCAAATATGGATATTTTAATTCAATTAAAATTG
TGCCTAGTTTTAAAAATCTATCATTGAGCAATTATTGTCTCAGTAACTGC
ACAATAGTTTGGTCAGGAGTTTTGGATAGGAAAGAATATTTCCAATTTCC
cggtttgggttagaaattcTGACTTTTTTACAGTAAGTTTGGATACAGAG
GTGTTTCAGATGATTTCGttcgcaaaaaaactttttgtttattGACAATT
TAACGTTAAACataaatttcaagcaatttaggtgTCAAAGTAGTAAGaat
tgggtataacgcctaaaatacctcaattacacctTATAAATAacaacagg
ataagaacaatttgaggctcaaagtgccaaaaaaataagaacagtcgacT
CTCAGAAAAATTATactggctcttataaaaaaagtctcATAATTGACCTA
tatggaaaaaaagaaagagtttaATAGTATCGTTTCAATAGTATTTGACT
TTGTTTACAGTAGTTTACAGCTAGGCTGTTTTGACGTGCTTTGGAATGAA
TGTTTACACAAATAGTAATACAACAgaattgaattttgtttttggaatca
taaaagaaagttttttctattac Run BLAST on NCBI transcript from alignment at scaffold_282:415999..417871 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056809 ID=TCONS_00056809|Name=TCONS_00056809|organism=Clytia hemisphaerica|type=transcript|length=1873bp|location=Sequence derived from alignment at scaffold_282:415999..417871 (Clytia hemisphaerica)
gtaatagaaaaaactttcttttatgattccaaaaacaaaattcaattcTG
TTGTATTACTATTTGTGTAAACATTCATTCCAAAGCACGTCAAAACAGCC
TAGCTGTAAACTACTGTAAACAAAGTCAAATACTATTGAAACGATACTAT
taaactctttctttttttccataTAGGTCAATTATgagactttttttata
agagccagtATAATTTTTCTGAGAgtcgactgttcttatttttttggcac
tttgagcctcaaattgttcttatcctgttgtTATTTATAaggtgtaattg
aggtattttaggcgttatacccaattCTTACTACTTTGAcacctaaattg
cttgaaatttatGTTTAACGTTAAATTGTCaataaacaaaaagttttttt
gcgaaCGAAATCATCTGAAACACCTCTGTATCCAAACTTACTGTAAAAAA
GTCAgaatttctaacccaaaccgGGAAATTGGAAATATTCTTTCCTATCC
AAAACTCCTGACCAAACTATTGTGCAGTTACTGAGACAATAATTGCTCAA
TGATAGATTTTTAAAACTAGGCACAATTTTAATTGAATTAAAATATCCAT
ATTTGACATTTCGGAAGTCTGGTAAGCATTCTTTCCCTTGAAGGAGAATT
TAGTATCTACATAACAGTTCTTATGTAAAAAGGAATTCTAGCTTATTCTT
GTGTAAGAATtagcaaatttaaaaataactgttcttattttcaatgattt
ttgagctaaaatattttaagattcttCAAGTATGCAAACGTTCTATATTT
TAATCGCTTATGACAAGTTTGCGACATTTCCGACACATCCTTAATTAGCT
CTTAGGTTTGGTCAAAAGCTGAAGCTTttgtttttgtcaaaattttctta
taaataaattgcATGTATATTCTTTGCTTTAATTGTAATAGCAGGATATG
CCAAAAGGATTTGTGAGATCAATAGTATCGAGGAGGCGCATGACAAGTAG
AGAGGATACTAGAATGCTTTATTCTCCGCAATTACCAGCTTACATCTTTT
TATCGTTGAACAATAACTTAAAAATAGACCGCGATTAAAAGAAATGCTTT
GTCTCGCTAATGTTTCCTTTTGTTTTCGCCTTACACATTTTTTCTCATTA
CACCAATCATCAGATTCGTATTCAGTCATCCAATCAATTAACCAATCGAC
AGAAATATTAAACGCGGAACTTGGTAGTATATAGTTAACGACATTTGCCC
ACTATCTATTTCAAACAATGTATAATTCCATGCACCCCTAGAATGTCTTc
tggcattttcgtcacttccCTAACATCTACTTGATTGCACTTGTTGGTGA
AAAGTTGTGATACCACAATAAAAGCTAGATtgttaaaacttaaaattctt
cCCTCTTAAAAATCAATTCTCAAATGTACAGTTAGATCGGGTGTGGTTTG
AATGTTTCCTTTAGCCTGTCTAACTATCCGTTTGTCTGTCTATCTTTCTC
AATATTCAACTTCGGTGaagcaatatttttaaaaacttccTAGACTCCTG
GCTAACTAcgacaattttggaaaaaccatcAAACATATCAGACATAATCT
TTTTTATACCTTTTGACATAATGCTATACTGAATGAAATATgatgaattt
tctttttaagaatGTAAGTAAACcacgattaatttttttaatctgtCCTA
ACTTACCAAATCAAAAGGGAAAGTATTTATTAAAAgcattgaagacaaaa
aatgtataaaatttagaaatgagCAACTGGGTCATTTTTCGTTGGTTTTA
TTTAACTTAGGACGTTAAACCTTGGTACCCTTTATCTATTTGTGAGATTT
CGTGGTTTTCTTAACTGGGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056809-exon-scaffold_282-1491911889:415999..417871 | TCONS_00056809-exon-scaffold_282-1491911889:415999..417871 | Clytia hemisphaerica | exon |
| TCONS_00056809-exon-scaffold_282-1510915933:415999..417871 | TCONS_00056809-exon-scaffold_282-1510915933:415999..417871 | Clytia hemisphaerica | exon |
| TCONS_00056809-exon-scaffold_282-1575043694:415999..417871 | TCONS_00056809-exon-scaffold_282-1575043694:415999..417871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:415999..417871 . |
Blast
The following BLAST results are available for this feature:
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