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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056786 ID=TCONS_00056786|Name=TCONS_00056786|organism=Clytia hemisphaerica|type=transcript|length=1468bp AACGATGGAACGACAACAAAACAAAAGAAAGCATGTACTTTTGGTGAGAA ATGTTATCGTACGAAAAACGGAGAACATATGAAAGAATATTCACATGAAA AGAACGAAGTCGAAAATGAAAAGGATCAGGAAATGAAGGAAACTACAGAT AAAGACAAGGAGCTGTGCAATGTTTTCACCGACATGTGCTTTACAATACA CAAAGATGTcccgaagaagaagaaaatcaaacgTTTTATCATCGCATATG ATGGTGATGTGGTTGATGACGTAGAAGATAGTGACGTCACTCACATCATT ACTGAAACTCATattACTGAAGCCAAGGCAACTACAATACAAGTTCAACC GGAATGGGTTTGGATATGTGTGAAAGCAaagaagttattcaaaattgacC CCTTTCTTCTTGTCACTGCTTCATGAAAGATGTAttgaatttttatcatt ttcatttttttaatcgGTACTGTTCagtattttagaaatatttaccCTTC TCTACCATGACATATGTTAGCAGTTAAGTAAGTGtttatacagtatatgg cccccaaaacggtgacggcccccaaaacggaggttttgcCTTGATGAGCC ATGTTTGTACTTTAGAACCTGAGAAAGCTTAAGGTTCAATCCTAACACAT TTCTCTTAAgtccgaaaaaagaaaaataccaaaatgtcatttttgacatg gctatttttcttcttcctttttttttaaatagtttcGAAAATCCCTTTTT TGGACTAAAACCGTCAAAAATCAAACAAGATTGGAAATTAACCCCTAAAA ACTCGGTAACTCTGGAAAGTATAAACATATACCAACATAATGTATATCCA CGTGAATTGAATTCCAGCCTCTAAATTAATTCAGAAATTATAAACCAACT TGCAGGTCATCCCAAAAATCGTAAGGGCTTATGAGATGATTTTGGATGTC CGAATTTCAGGAAAATCCTAAAAATCGTATCCTTATGCGGTATAAATTTA GAAATATATTCAAAACATAATATGAGGAAGGAATTTGTGTTGTATGTATT TTGTCAGTGTTTCGTTTGTACAACAATTTTTTATAGCAGTGTATGAACGG TCACTTTCTTAACCTGTTTGGTTTAAATTTTTgtatggaatttttttatg atctactttttgtttatttattgcgAAGATTATtataataaaatgtaatt tatACAAATTATCGAATATTCGATCATagtattttcatcattttcaaatt taaaaaatgtgacGACAACACTATTAATCAATCTATAGTGTATTGTAGTG TCTAGGATTGGGTTATCGCTCAGTATtgtaaattataaaaatgaagaaat tactGGATCGTAtagattgaatttaaatttattgtattctttgttttatc caaggtaaattttttaagaaatatgcAACAAAACCATTAGCTTATTAACG TGAATATATTTGTAGGCA Run BLAST on NCBI transcript from alignment at scaffold_282:450456..454197- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056786 ID=TCONS_00056786|Name=TCONS_00056786|organism=Clytia hemisphaerica|type=transcript|length=3742bp|location=Sequence derived from alignment at scaffold_282:450456..454197- (Clytia hemisphaerica) AACGATGGAACGACAACAAAACAAAAGGTTTTCTTACTCAACTATAAACC
AAACTGAATAAGGAGGACCAGGGGGGTACATGTTCAGTGTAGTGACCCAT
ATAGTGACGCATATCAAGAATAGGTGATGGTAGCCACTACAGGGTATTAA
AAAGGTGGTATGAGGATTGAAATGTGTGGTGATAGCTGCTACTACACGTT
ACTAAAAGGGTGGTATAGGGATTTATATATGGGCGGTGATATCTACTACA
AGGTACTAAAGGGTGGTATAAGGACTCAAATTGGTGGTAATAGCTACTAC
ATGGTAGTAAAAGGAGTGGTCCCCTAAAAAAAATCTCAGAAAAAACTAGT
ACCATATACTAAAACAGGGTGGTGGTCCCAGATTTTTTTTAAATTACCGA
AAATCAGGTTATTCCCCCATGGGCTACTACACTGAACATGTACCCCCCCC
CCTGGGAGGACTGCATGCTTTTGTGAAACCAAATTTTAATACCATGTTTT
GTCTTCTACAGAATGATTCATGATATCAATGTACTCTCGCCCTATACAAT
TCATTTAATATTAGGAGGACAAGGGAAACTGTCTCTCTGATAACAATAAA
TTTGTATTTGGGATCGAAACTGGAACTCTACGCTGGAAGAAGGGGAGAGC
CTTTTGTTTTGGGCATAGCATTCAGGGGACAAGCATAAACTGACACTAGA
TGTATTTAGCGACAAATCCGTTGTTGATTTCTTTAATAATAAAAGTATAA
CCATTAGAGATTGAAAAATGTATTCGAATACAATGTTTTTGTCTTCGAGA
TCATTGAACGAACAATCGACTTAGAATGTCCACAGCTTCCTTATACAAGA
AACATCTCTCGTTCCTCGTTCCCGTACAAAACCAAAATGTCTACATTCTT
CCTCGATACGATCGTTAAGCTTTGCAATCTCTTCAATCTTCAATCTTGCA
ATCTTCAATGCCAGCCCAAACATAGAAGTGTTTTAAATTCATTCGCTAAG
CATCATATAATTAAATGCTGAATAAGATGGCTATAATGTTGGTTACTATA
GCAATAGTTATAAAATGGCAGATCATAAATAAATCCACCATGACAGTGCA
CTTCTCTTTTTCTTCTTCTTCTTCAAGAAATGAGATTCAACCATTTTAAA
GAAACAACAATCACTAATGGTTTAACTCACAAAGAATGTTCTTTTCTTTG
GAATTTTGATCTGAAAACCCTTAAGACACCTTCGTGATATAGTATGCCAT
GAATATCACATTTTTTCTGTTATCTTCAGAAAGCATGTACTTTTGGTGAG
AAATGTTATCGTACGAAAAACGGAGAACATATGAAAGAATATTCACATGA
AAAGAACGAAGTCGAAAATGAAAAGGATCAGGAAATGAAGGAAACTACAG
ATAAAGACAAGGTATTACAATACTGAAGATCAATGCTTGATCGACCTCTT
ATCTTAAATAAATTCCAAAGATGATAAATTCGAAGATGGCTTTCCTACTC
AAAAATGAGGCGAAAACGTTTAAAGTATGTCGATACATGCATAGAGTCGT
GGCCTGTTGCGAGGTAGTAGAGCCGATCTTTTAAAGACAAGGTGTGCCAG
AATTTTTTCCATTACAAAAACTTTGCCGGCTACGTTCTTTTCTTTCTCCA
CAAATACAGGTTTTTAACCAAAATTGGAAAATTTTACCCTAATATTTTTC
ATTAGTAAGGAGGTGCCTGAATCTCTACTTTTTCAATTTGCCTCCCCCGG
TCTTGATCAAGCCACCAAGCGACTACTTGTGGTGCGCACGTACAGTTTAT
AGTTTGTAGTTCAAACCTTTCAGATGACTTCTGTTCCTTTCATAGGAGCT
GTGCAATGTTTTCACCGACATGTGCTTTACAATACACAAAGATGTCCCGA
AGAAGAAGAAAATCAAACGTTTTATCATCGCGTAAGTCGTTTATACACCA
AACAAGATGACAAACTACCAGTTTTCCATGCCCGTCTCTTGCCAAAAGCC
AGTATTTCCCGCTATCGGTGAAATCACTATGGAGAAAAAAAGCTTTGATG
ATTTTAACCATTGGAAAGAAAGTATCAAAGTTTTCAATCTTGTAAAAAAA
ATGAATATTGAAGTTTAAAGTTAATCAAATTTCTGTAAAGTTCACTGTAT
CAGCGTATAATTTCTTCGTTTCTCACCGTATCATTGATGTTCATCATACG
TTTGTGTATTACTAGGTCTTGAATCATGCATGCTTTTATGTAATCATTTA
TTTTCTTCTCTTTTCTCCAGATATGATGGTGATGTGGTTGATGACGTAGA
AGATAGTGACGTCACTCACATCATTACTGAAACTCATGTAAGTTATAATT
TCGCTCAAAAAAACTGATCGTGATCGTGTACATGAATTTCCATGAAAATA
ATTTTGTTACAAGGTTGTTTCCTAGGTCATATGCATCCTGTTACATGATG
TTTGAAGAAAGTTTCATATACATTCTCTTGTAAATTTCAGTTGCAAAACC
ATTTTTTAAGCCCGTGTTTGAGCTATATTACGTTAAGTTATATTACGCTT
ATTATATATTTCTAATTTTTATGTTTTTTTTTCTAGATTACTGAAGCCAA
GGCAACTACAATACAAGTTCAACCGGAATGGGTTTGGATATGTGTGAAAG
CAAAGAAGTTATTCAAAATTGACCCCTTTCTTCTTGTCACTGCTTCATGA
AAGATGTATTGAATTTTTATCATTTTCATTTTTTTAATCGGTACTGTTCA
GTATTTTAGAAATATTTACCCTTCTCTACCATGACATATGTTAGCAGTTA
AGTAAGTGTTTATACAGTATATGGCCCCCAAAACGGTGACGGCCCCCAAA
ACGGAGGTTTTGCCTTGATGAGCCATGTTTGTACTTTAGAACCTGAGAAA
GCTTAAGGTTCAATCCTAACACATTTCTCTTAAGTCCGAAAAAAGAAAAA
TACCAAAATGTCATTTTTGACATGGCTATTTTTCTTCTTCCTTTTTTTTT
AAATAGTTTCGAAAATCCCTTTTTTGGACTAAAACCGTCAAAAATCAAAC
AAGATTGGAAATTAACCCCTAAAAACTCGGTAACTCTGGAAAGTATAAAC
ATATACCAACATAATGTATATCCACGTGAATTGAATTCCAGCCTCTAAAT
TAATTCAGAAATTATAAACCAACTTGCAGGTCATCCCAAAAATCGTAAGG
GCTTATGAGATGATTTTGGATGTCCGAATTTCAGGAAAATCCTAAAAATC
GTATCCTTATGCGGTATAAATTTAGAAATATATTCAAAACATAATATGAG
GAAGGAATTTGTGTTGTATGTATTTTGTCAGTGTTTCGTTTGTACAACAA
TTTTTTATAGCAGTGTATGAACGGTCACTTTCTTAACCTGTTTGGTTTAA
ATTTTTGTATGGAATTTTTTTATGATCTACTTTTTGTTTATTTATTGCGA
AGATTATTATAATAAAATGTAATTTATACAAATTATCGAATATTCGATCA
TAGTATTTTCATCATTTTCAAATTTAAAAAATGTGACGACAACACTATTA
ATCAATCTATAGTGTATTGTAGTGTCTAGGATTGGGTTATCGCTCAGTAT
TGTAAATTATAAAAATGAAGAAATTACTGGATCGTATAGATTGAATTTAA
ATTTATTGTATTCTTTGTTTTATCCAAGGTAAATTTTTTAAGAAATATGC
AACAAAACCATTAGCTTATTAACGTGAATATATTTGTAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056786-exon-scaffold_282-1575043694:454171..454197 | TCONS_00056786-exon-scaffold_282-1575043694:454171..454197 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1575043694:452787..452918 | TCONS_00056786-exon-scaffold_282-1575043694:452787..452918 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1575043694:452267..452352 | TCONS_00056786-exon-scaffold_282-1575043694:452267..452352 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1575043694:451861..451927 | TCONS_00056786-exon-scaffold_282-1575043694:451861..451927 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1575043694:450456..451611 | TCONS_00056786-exon-scaffold_282-1575043694:450456..451611 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1510915933:454171..454197 | TCONS_00056786-exon-scaffold_282-1510915933:454171..454197 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1510915933:452787..452918 | TCONS_00056786-exon-scaffold_282-1510915933:452787..452918 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1510915933:452267..452352 | TCONS_00056786-exon-scaffold_282-1510915933:452267..452352 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1510915933:451861..451927 | TCONS_00056786-exon-scaffold_282-1510915933:451861..451927 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1510915933:450456..451611 | TCONS_00056786-exon-scaffold_282-1510915933:450456..451611 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1491911889:454171..454197 | TCONS_00056786-exon-scaffold_282-1491911889:454171..454197 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1491911889:452787..452918 | TCONS_00056786-exon-scaffold_282-1491911889:452787..452918 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1491911889:452267..452352 | TCONS_00056786-exon-scaffold_282-1491911889:452267..452352 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1491911889:451861..451927 | TCONS_00056786-exon-scaffold_282-1491911889:451861..451927 | Clytia hemisphaerica | exon |
TCONS_00056786-exon-scaffold_282-1491911889:450456..451611 | TCONS_00056786-exon-scaffold_282-1491911889:450456..451611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_282 | supercontig | scaffold_282:450456..454197 - |
Blast
The following BLAST results are available for this feature:
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