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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056817 ID=TCONS_00056817|Name=TCONS_00056817|organism=Clytia hemisphaerica|type=transcript|length=1212bpRun BLAST on NCBI protein sequence of TCONS_00056817-protein >TCONS_00056817-protein ID=TCONS_00056817-protein|Name=TCONS_00056817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp MSGQENRTEYLKDAFKRRTLSTAKTVLEYHSKINIDETAPVIRSVGIICTRun BLAST on NCBI transcript from alignment at scaffold_283:579..67242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056817 ID=TCONS_00056817|Name=TCONS_00056817|organism=Clytia hemisphaerica|type=transcript|length=66664bp|location=Sequence derived from alignment at scaffold_283:579..67242+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_283:579..67242+ >TCONS_00056817 ID=TCONS_00056817|Name=TCONS_00056817|organism=Clytia hemisphaerica|type=CDS|length=8856bp|location=Sequence derived from alignment at scaffold_283:579..67242+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056817 vs. Swiss-Prot (Human)
Match: KPYM (Pyruvate kinase PKM OS=Homo sapiens GN=PKM PE=1 SV=4) HSP 1 Score: 434.876 bits (1117), Expect = 4.595e-148 Identity = 212/356 (59.55%), Postives = 273/356 (76.69%), Query Frame = 3
Query: 165 STAKTVLEYHSKINIDETAPVIRSVGIICTIGPTSQKVEQLEALISAGMNIARMNFSHGTHEYHGSTIENVRAAAAK-----VYPHPIAIALDTKGPEIRTGMMK-SGK-DVTYKKGQALKISCNPAMREQCDENQQYLEYPSLCKSLKAGSKIFIADGMLILEVREVLNDDMLMAEVKCDATIGSRKNCNLPGAIIDLPAVSEKDRSDLLFGVEQKVDMVFASFIRKKEDIFDIRKVLGEEGKSIKIIAKVENHEGITNIDEIVEHSDGVMVARGDMGMEIPLEKVFLAQKLIISKCNKNKKPVICATQMLESMIKNPRPTRAEITDVGNAVTDGCDCVMLSGESANGAYPVEAV 1211
+ A T LE+ +++ID R+ GIICTIGP S+ VE L+ +I +GMN+AR+NFSHGTHEYH TI+NVR A + P+A+ALDTKGPEIRTG++K SG +V KKG LKI+ + A E+CDEN +L+Y ++CK ++ GSKI++ DG++ L+V++ D L+ EV+ ++GS+K NLPGA +DLPAVSEKD DL FGVEQ VDMVFASFIRK D+ ++RKVLGE+GK+IKII+K+ENHEG+ DEI+E SDG+MVARGD+G+EIP EKVFLAQK++I +CN+ KPVICATQMLESMIK PRPTRAE +DV NAV DG DC+MLSGE+A G YP+EAV
Sbjct: 21 AMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQ-KGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAV 375 The following BLAST results are available for this feature:
BLAST of TCONS_00056817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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