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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056819 ID=TCONS_00056819|Name=TCONS_00056819|organism=Clytia hemisphaerica|type=transcript|length=3179bpRun BLAST on NCBI protein sequence of TCONS_00056819-protein >TCONS_00056819-protein ID=TCONS_00056819-protein|Name=TCONS_00056819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp MSIIGMILPTVLLYGLYLSCTKRSCTMLKLPAIPSCEKFFNWKSTGYVFGRun BLAST on NCBI transcript from alignment at scaffold_283:4980..16486+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056819 ID=TCONS_00056819|Name=TCONS_00056819|organism=Clytia hemisphaerica|type=transcript|length=11507bp|location=Sequence derived from alignment at scaffold_283:4980..16486+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_283:4980..16486+ >TCONS_00056819 ID=TCONS_00056819|Name=TCONS_00056819|organism=Clytia hemisphaerica|type=CDS|length=10773bp|location=Sequence derived from alignment at scaffold_283:4980..16486+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056819 vs. Swiss-Prot (Human)
Match: LBR (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2) HSP 1 Score: 236.498 bits (602), Expect = 1.990e-66 Identity = 132/386 (34.20%), Postives = 212/386 (54.92%), Query Frame = 1
Query: 613 CTKRSCTMLKLPA-IPSCEKFFNWKSTGYVFGWFIFQMVLSAIPLGKVVTGPVLADGKARQHCLNGLFQFAISMATIGGLVFYGKLPFKYLTVNYLSLITAAAIYSFIVSIVVYFASRNA-----SPKEPSNGFFSDFMKGRAASPRIGNFDIKMY-AFKTGAVSWAAYNVCLLVREMSNGKDLTKTNPGFLLLVAFQIWYALDLLVFEESLLYTATLSKDKMGY-FAFDMMFGITPFYGTLQTRYLVSHPVALPWYCFVIPIMLHVVGFYIYRTSLMQKFLFRKDFKKASELGVKSIPTKCGRNLLVDGFWGSLRHPNYTGDFMMNVSWGIICGVTHLLPWVAPIALFALLIQMATADDKGCSEKYGASWDEYRERVKYKFIPYI 1746
C ++ ++L P +P+ + + + G WF+ Q++ +P+GKVV G L DG+ ++ LNG + F ++ A IG +F G + F Y+ ++L AA ++ ++S+ +Y S A SP N + DF GR +PRIG FD+K + + G + W N+ +L+ EM +D + +L+ +FQ+ Y +D L EE+LL T + D G+ AF + + PF + Q YLVSHP + W + I+L + G+ I+R + QK FRK+ +K+I T G+NLLV G+WG +RHPNY GD +M ++W + CG H+LP+ I LL+ D+ C +KYG +W++Y +RV Y+ PYI
Sbjct: 233 CKQKDPSLLNFPPPLPALYELWETRVFGVYLLWFLIQVLFYLLPIGKVVEGTPLIDGRRLKYRLNGFYAFILTSAVIGTSLFQG-VEFHYVYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPASSGNAVY-DFFIGRELNPRIGTFDLKYFCELRPGLIGWVVINLVMLLAEMKI-QDRAVPSLAMILVNSFQLLYVVDALWNEEALLTTMDIIHDGFGFMLAFGDLVWV-PFIYSFQAFYLVSHPNEVSWPMASLIIVLKLCGYVIFRGANSQKNAFRKNPSDPKLAHLKTIHTSTGKNLLVSGWWGFVRHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYCQRVPYRIFPYI 614 The following BLAST results are available for this feature:
BLAST of TCONS_00056819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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