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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056821 ID=TCONS_00056821|Name=TCONS_00056821|organism=Clytia hemisphaerica|type=transcript|length=2128bp
ATATTTCTGCTTACCTTATCGGTCCCCTTTCACCCGTGCTAATTTAGCAC
CTGTCCTTATTAAGCTGAAGTTCAATTCCTTACGCCGTCCCTTACTACGC
CAGCGAcgtaaaaataacgccaattaGGACCGGTGTAACAGAGTCAATAA
GATATTAGGTTGAGGGCTATCGTTTACCatggttagattatctaaaaaag
cttttactttacgagaaagtgaaaaaaaatcatctaatTTGAGGCCTTTT
AGCAAACTGGCTGCTTTTAAAATAACGTGTACTTTACATTGTGGattatg
attttattttcatcaacAGATCTGCAAAGAAGCATGTTCGGCTATCCACT
ACGAGAAACGTTTCCAAGAACTGACCGCTTCCTCTCACTCCACCGACACT
GCCGAGATTGTTGCTCTTTCCGCCGTCTCCGCTGCTTTCAAAGTCAGTGC
GGCTGCCATTATTGTGTTGACCACATCAGGAAGATCGGCCACTTTGTTGT
CTCATTTCTGTCCAAACTGTCCAATCATTGTCATCACACGTTCAGCACCA
GTTGCCAGGAAGCTTCATGTCTACCGAGGTCTCTTCCCATTAGAATATCC
ATACGCCAGAAAGGGGACTTGGACAGAAGACATTGATGCACGGTTGGATT
TTGGAATCAAGAAAGGATTAGACATGGGTTTCATTTTACCAAGTTCAAAA
GTGATTTTCGTGTGTGGTTACCAACCTGGTTCGTCTACCACCAATACAAT
GAGAATCCTGTCAGTTGAAGGTGATCACCACATTGGCACACCTGAGAGCA
ACATCGTCTTCAAATAAGAGATGGGAACTTATTGCATCTTATCTTAAACA
CGTGTGTTGTAGACCATCGTAACCAAGAATAGGAACGTGAGCTTTgtgat
tcaatttttagtttttgaggctgtgtaattttttttcaaatgtgtGGTTT
TGTTTTTGTGGTGTTGGTTCCGTTTCAGTTTTGCTCTTCTTTATAgcatg
tttttctcacattggATAGTATTTTGTATAAGTTTTGTTGAAATTACTTC
TAAATACGCttaaaaagaaatataatattgtatcttatttaaaaatttta
gttGCTTTGTTCAGCATTTTTTTCGTTGGCAGgcttatattttttttgaa
aatcgatttCCAAAATTGATTACTAAATTGATTACTAAATTGATTGGAAG
Attgtacacacttttttataagaatggtggtttttcatttcatcatggat
attcttaacttttttggcaaaaatcatcctaaaatatttttgtgcgatat
aacattttttggaaatttacctcctgacttttgacccccggacagcaggt
ctaacccccggACACGTATTAGTTGACCTCCTGGACATGGacaatcaaaa
ttaccctcaaacagagcaagtttaccccaggacaaggcaaattttgtaga
ttttccaCTACCCTCttcccccggacactatatcctccaccaccatttac
gaacattttctggaagagttcCTTACGGTTTTCTTGGGTTAAAATTGAAA
TTCGACCTaaagtttaaaaatgttattcttCGGTTCAGTTGCTATATTCC
ATGATGgcgatattcttaccatatattttattttttagccaATTATATCA
taagtattcttataaagtaccttatcggggaaaaatgtcggagttttact
tagtccgttttttttttgtcggggaaaaatttcatcacctagaggcattt
tagTCACTtctccccgaccaaaatttcaaattcgtcactttcacccgact
aaattgtccaaaagaaatggtttcctcactaattcgacgtttaaagcact
aatttcggtaaataaaggtgtaaaaaaattagatttaaattttggttgcg
gtataaaattttgggtaaatgttttggtcgcggataaaaaaatcgggtac
aagttttggtcAGGTGATAAGATGTCGGTGAaatatttcgtcggggaaaa
atttcgtcaccccctcaaaattttcgtcactttcccccgacatttttttc
cccggtaaggtatattcttttaaaaagcgtgtatctttTTGGACAAAGAA
AATGTATCGATGTATTGAATGCGAAAAC Run BLAST on NCBI transcript from alignment at scaffold_283:67773..70540+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056821 ID=TCONS_00056821|Name=TCONS_00056821|organism=Clytia hemisphaerica|type=transcript|length=2768bp|location=Sequence derived from alignment at scaffold_283:67773..70540+ (Clytia hemisphaerica)
ATATTTCTGCTTACCTTATCGGTCCCCTTTCACCCGTGCTAATTTAGCAC
CTGTCCTTATTAAGCTGAAGTTCAATTCCTTACGCCGTCCCTTACTACGC
CAGCGAcgtaaaaataacgccaattaGGACCGGTGTAACAGAGTCAATAA
GATATTAGGTTGAGGGCTATCGTTTACCatggttagattatctaaaaaag
cttttactttacgagaaagtgaaaaaaaatcatctaatTTGAGGCCTTTT
AGCAAACTGGCTGCTTTTAAAATAACGTGTACTTTACATTGTGGattatg
attttattttcatcaacAGATCTGCAAAGAAGCATGTTCGGCTATCCACT
ACGAGAAACGTTTCCAAGAACTGACCGCTTCCTCTCACTCCACCGACACT
GCCGAGATTGTTGCTCTTTCCGCCGTCTCCGCTGCTTTCAAAGTCAGTGC
GGCTGCCATTATTGTGTTGACCACATCAGGAAGGTACGTTGGATGtcatt
tactttaatgggattaaatatcgcggttgagctcatccccgaaattttaa
gattccgTGGGGACCTAATTTTGCGGATGgcactaccttatcggccaaaa
cttagtcggcctcaattattagtcggccctaatttttgtcacctcgtcaa
aatttagtcgctaagggccgactaataattaagaccgactaaaaatttgg
gccatttctaaatttacaagcagatggaaaataggagaaagcttaaaata
ctggaaaataaggaaaacttttaattaggcccaaatttttagtcggccct
aattctagtcaccaagccaaaatttagtcacttagggtcGACTAAGTTAA
GTCCTTTCCGAATTTCCGTCGGGACTTAAaaaagtctgcgaccgcagtca
gaggcaacccgaaggctctaagtctgatggtaagttgtgacggaataatt
ccaaggcaaacttaaaatccgtaaatataaaaaactctaaagcgccgaaa
acgctatattgccataagccgtgtgtcctagcctagTGAATACGGGCTTG
ATTAAACTATATGACAAGATATATGAGATATAATAATCAGTACTAAATTC
gttcaattcttttttctttacagATCGGCCACTTTGTTGTCTCATTTCTG
TCCAAACTGTCCAATCATTGTCATCACACGTTCAGCACCAGTTGCCAGGA
AGCTTCATGTCTACCGAGGTCTCTTCCCATTAGAATATCCATACGCCAGA
AAGGGGACTTGGACAGAAGACATTGATGCACGGTTGGATTTTGGAATCAA
GAAAGGATTAGACATGGGTTTCATTTTACCAAGTTCAAAAGTGATTTTCG
TGTGTGGTTACCAACCTGGTTCGTCTACCACCAATACAATGAGAATCCTG
TCAGTTGAAGGTGATCACCACATTGGCACACCTGAGAGCAACATCGTCTT
CAAATAAGAGATGGGAACTTATTGCATCTTATCTTAAACACGTGTGTTGT
AGACCATCGTAACCAAGAATAGGAACGTGAGCTTTgtgattcaattttta
gtttttgaggctgtgtaattttttttcaaatgtgtGGTTTTGTTTTTGTG
GTGTTGGTTCCGTTTCAGTTTTGCTCTTCTTTATAgcatgtttttctcac
attggATAGTATTTTGTATAAGTTTTGTTGAAATTACTTCTAAATACGCt
taaaaagaaatataatattgtatcttatttaaaaattttagttGCTTTGT
TCAGCATTTTTTTCGTTGGCAGgcttatattttttttgaaaatcgatttC
CAAAATTGATTACTAAATTGATTACTAAATTGATTGGAAGAttgtacaca
cttttttataagaatggtggtttttcatttcatcatggatattcttaact
tttttggcaaaaatcatcctaaaatatttttgtgcgatataacatttttt
ggaaatttacctcctgacttttgacccccggacagcaggtctaacccccg
gACACGTATTAGTTGACCTCCTGGACATGGacaatcaaaattaccctcaa
acagagcaagtttaccccaggacaaggcaaattttgtagattttccaCTA
CCCTCttcccccggacactatatcctccaccaccatttacgaacattttc
tggaagagttcCTTACGGTTTTCTTGGGTTAAAATTGAAATTCGACCTaa
agtttaaaaatgttattcttCGGTTCAGTTGCTATATTCCATGATGgcga
tattcttaccatatattttattttttagccaATTATATCAtaagtattct
tataaagtaccttatcggggaaaaatgtcggagttttacttagtccgttt
tttttttgtcggggaaaaatttcatcacctagaggcattttagTCACTtc
tccccgaccaaaatttcaaattcgtcactttcacccgactaaattgtcca
aaagaaatggtttcctcactaattcgacgtttaaagcactaatttcggta
aataaaggtgtaaaaaaattagatttaaattttggttgcggtataaaatt
ttgggtaaatgttttggtcgcggataaaaaaatcgggtacaagttttggt
cAGGTGATAAGATGTCGGTGAaatatttcgtcggggaaaaatttcgtcac
cccctcaaaattttcgtcactttcccccgacatttttttccccggtaagg
tatattcttttaaaaagcgtgtatctttTTGGACAAAGAAAATGTATCGA
TGTATTGAATGCGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056821-exon-scaffold_283-1491911889:67773..68255 | TCONS_00056821-exon-scaffold_283-1491911889:67773..68255 | Clytia hemisphaerica | exon |
| TCONS_00056821-exon-scaffold_283-1510915933:67773..68255 | TCONS_00056821-exon-scaffold_283-1510915933:67773..68255 | Clytia hemisphaerica | exon |
| TCONS_00056821-exon-scaffold_283-1575043694:67773..68255 | TCONS_00056821-exon-scaffold_283-1575043694:67773..68255 | Clytia hemisphaerica | exon |
| TCONS_00056821-exon-scaffold_283-1491911889:68896..70540 | TCONS_00056821-exon-scaffold_283-1491911889:68896..70540 | Clytia hemisphaerica | exon |
| TCONS_00056821-exon-scaffold_283-1510915933:68896..70540 | TCONS_00056821-exon-scaffold_283-1510915933:68896..70540 | Clytia hemisphaerica | exon |
| TCONS_00056821-exon-scaffold_283-1575043694:68896..70540 | TCONS_00056821-exon-scaffold_283-1575043694:68896..70540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_283 | supercontig | scaffold_283:67773..70540 + |
Blast
BLAST of TCONS_00056821 vs. Swiss-Prot (Human)
Match: KPYR (Pyruvate kinase PKLR OS=Homo sapiens GN=PKLR PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 3.422e-28 Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 2
Query: 308 FHQQICKEACSAIHYEKRFQELT-ASSHSTDTAEIXXXXXXXXXXXXXXXXIIVLTTSGRSATLLSHFCPNCPIIVITRSAPVARKLHVYRGLFPLEYPYARKGTWTEDIDARLDFGIKKGLDMGFILPSSKVIFVCGYQPGSSTTNTMRILSV 766
I +EA +A+++ + F+EL A+ S D E+ A+ AV AAFK AAAIIVLTT+GRSA LLS + P +I +TRSA AR++H+ RG+FPL Y + W +D+D R+ FGI+ G GF+ VI V G++PGS TN MR+LS+
Sbjct: 420 MQHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLSI 573
The following BLAST results are available for this feature:
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