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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056823 ID=TCONS_00056823|Name=TCONS_00056823|organism=Clytia hemisphaerica|type=transcript|length=1421bp
GTTTTTATgtaatattttctttgtttttcatttgttttcttaatattttc
cattccttttcttcattttctcaaAGACAACGGTATAAAAAGGTTAACGA
ATAGATTTCTGTTATCATTAAACAGAAATCATACTTTTGAGTgttggatt
taaaaaaatatagcaTATACATCAATAATCTATAAAGAAGTGATGATGAA
ACTAAAAGTTTGGTTTATCAGATTGCTTTTTGTTGCAACCACCTTAAGTT
GtcacttggaaaatgattgtgATCATTGTAGTGCTGGTTGCCCCGCAGGG
CCACCAGGGCCAATGGGACCTCAAGGATCATCAGGACTGGAAGGAGATGA
CGGTGTTGCCGGACCTCCAGGCCCTCCATCGACCATCGCTGGTCCTACTG
GCGATCTAGGTGGGGAAGGTCCTTTAGGCCCACCAGGTGCTACAGGAGAC
AGAGGTGTCAGAGGTAATGCAGGGCCTCCAGGACCCCCTGGTCCAATAGA
ACTATGTGGCTGTGGAATCAAAAGTCATTACTTTGTTCCTGAAGGTGCTA
CTCCAATGCTTTCTTGGCAAGCTGCTCGGGACCTATGCGAAGCAAATATG
GCAAACCTGGTTGGTCTTTACAATACGagagaaaatatatatattactgc
aagatttctttctttaaacACTATTTGGATTGGACTCGTAAATGACATCG
CTAATTCGGAATTCAGGTGGATTGATAATGATATTTCTGATTACCGAAAC
TGGTGTACTGGTACACCACCAACTGGTGCTACAGGGTGTGTTTTGTTAGA
TTTTGAGAATGCCAATTCGGATGCACCTGGTTGTTTTAAGCTTGTCCCTT
GTACAGAAGATCATGCATATATTTGTGAATTCAAAGTCGATTATGATGAT
AATGGAATATCACTGGTACAAGCCTTATCAACTAATATTTGGCAACAAAG
ATGTCCATCTTGCATTGAGTGATTGGTTTTTCTACTCCAAGCTATAATAT
GTACCGATTTTTCATATCTCTTTTGGATAAATTCTGAATAcacttttgaa
ataaaaagatattgCCACTTTCCGGACTCATAAATGCATTTATTTATCAA
ATTATATTTAATATTACTTTAATGTTTgatgataatcaattttcaaacat
ttgcctaggcatagaGGGCCTAGGCTACACGCATCCCTCTCACGGCCCAC
GCCATGAAATTGAAAGCGCCCCCACCCCCTGAATATAGAGCCTAAGGCGG
CGCAACCAGATATTTTTACTTTCCAAAAAAGTGGGGGCCATGGTCCAACT
GCAACCCCCAGTGGCGTGGGccctcccagctggcacacaacgttgtttca
acgttcatctaacgttatatggacgttgtgaacgttagataaacgttgaa
acaacgttgtgtgccagctgg Run BLAST on NCBI transcript from alignment at scaffold_283:75474..78705- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056823 ID=TCONS_00056823|Name=TCONS_00056823|organism=Clytia hemisphaerica|type=transcript|length=3232bp|location=Sequence derived from alignment at scaffold_283:75474..78705- (Clytia hemisphaerica)
GTTTTTATGTAATATTTTCTTTGTTTTTCATTTGTTTTCTTAATATTTTC
CATTCCTTTTCTTCATTTTCTCAAAGACAACGGTATAAAAAGGTTAACGA
ATAGATTTCTGTTATCATTAAACAGAAATCATACTTTTGAGTGTTGGATT
TAAAAAAATATAGCATATACATCAATAATCTATAAAGAAGTGATGATGAA
ACTAAAAGTTTGGTTTATCAGATTGCTTTTTGTTGCAACCACCTTAAGTT
GTCACTTGGAAAATGATTGTGATCATTGTAGTGCTGGTTGCCCCGCAGGG
CCACCAGGGCCAATGGGACCTCAAGGATCATCAGGACTGGAAGGAGATGA
CGGTGTTGCCGGACCTCCAGGCCCTCCATCGACCATCGCTGGTCCTACTG
GCGATCTAGGTGGGGAAGGTCCTTTAGGCCCACCAGGTGCTACAGGAGAC
AGAGGTGTCAGAGGTAATGCAGGGCCTCCAGGACCCCCTGGTCCAATAGA
ACTATGTGGCTGTGGAATCAAAAGTCATTACTTTGTTCCTGAAGGTGCTA
CTCCAATGCTTTCTTGGCAAGCTGCTCGGGACCTATGCGAAGCAAATATG
GCAAACCTGGTTGGTCTTTACAATACGAGAGAAAATATATATATTACTGC
AAGATTTCTTTCTTTAAAGTAAGTAAACTTTCCCTTTCTTTAGACACTAC
TGGAAAGTTTTTCGGTTGGAAGAAAAATCCTACCGGGTACGCCGCAAATT
CTTTTCCTTTGGACAGGAGTTTCATCAACGGTCGGGAGTATCTCATCTTT
GTTGTTTGGTTTTGTTGTTTGGAATTGCTTAGGTCAGGGTTGGTAGTAAC
GGCTTGTCACTGTGCGGGGTGCATACTCGGCGCCTTGGACCCCTCAGGGT
TGCAAGTAACGGCTTGAATTTCAGTCAGGTTAAAAAAGGGGCAATTTTAC
CCATGTTACAATTACATTACCCCCGTCTTTTTTGTCATTCAATAAGTATT
TCCAAATTTGAGTTCTGCTGTGCGAGTGTGGCTCAACGGATAGCGCACTG
GGTTTCTGATCAGAAACTCTTTCATTTGGTGGGTTCGAACCCCGGTCGGG
TCGATATATCAAGGTTTAAGATAAGTTTAAGATACTCCCGCCCGTCGATG
ATACTCCCGACCGTCAATATGAGATACTCCCGACCGTCGATGATACTCCC
GACCGTCAAGATGAGATACTCCCGACCGTCGATGATACTCGCCACAAAAA
TGTTTCTCTCTTTAAAGTGAATTTTCCCGAAGTCTAAAATCTTAAAAATA
ACCAATCCTTTTTCATTGGAAAGAAGAAAAATAAATTTAAATTTTGATGG
GTCATTTATAAAATTTGGTTCATTAGATCAAAAGTTACGCTCAATGGAAT
AAAAAAGTTACTTTCAGAAAATGCTCAAAAACGTTAAAAATCGACCTATC
AAATCTTAATTTTAAAATTGGCCATTACAATAGCCTTCACATGATTAAGA
GCATTTTACACCATTTAAAACCACTGTGGTATAATAGCTATGGTATATCA
GGAATTATTCAATGGCTGTTTTATAGCCCCGAGTCCTCTTCGGGTATCTT
TTTTTGATTTCCAAAGTCCCGCTAAGGGTTGGAAAAATCAGAAAATCAAA
TTTCAGTCCAACTAAGGGTCGGAGAAATAGAAAAATTTCAACTTTTTTAC
CCCCTGGAAAGATCGAAATTTGGTCGAATTTGTTTCAATAAATAAGGGTC
GTGAAATTCGGTAAGGGTCCAAAGGTCGAAAATCGGGGCAGCACAACCCC
CCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CCGTCAGCTTGCAACCCTAGTACATCCCGCTGGATTATAGCACGGTAGAA
CGGTAGAGTTCTTTTTTTCGTCAAAGTTTGCTCTCAAAGTTTGATATTTC
ACTCTTCTTGTTTATCAAAGAAATTTATTAAAATAAATCTATTGTTGATT
TCGTGAACTAATTTTAAGACTCAAAGAAATTAAGAAACTTATTACGAAAG
CAACAAAAATATTCGAACCGGGATTCAAATGTTCGATTATGGGAGTGTTT
ACATAATTAATGTTTTGTTTTTTTTGCCTCTTGGCATATAATAAAACATA
TACAATAGGTTTTCGTTGGTTATTGGATCAATAAATCTCCAATAACCAAC
TTTTACCTATTTCATATCTGCTTATGGTAGCAAATTTTTTTTTATCATAG
CACTATTTGGATTGGACTCGTAAATGACATCGCTAATTCGGAATTCAGGT
GGATTGATAATGATATTTCTGATTACCGAAACTGGTGTACTGGTACACCA
GCAACTGGTGCTCCAGGGTGTGTTTTGCNCACTATTTGGATTGGACTCGT
AAATGACATCGCTAATTCGGAATTCAGGTGGATTGATAATGATATTTCTG
ATTACCGAAACTGGTGTACTGGTACACCACCAACTGGTGCTACAGGGTGT
GTTTTGTTAGATTTTGAGAATGCCAATTCGGATGCACCTGGTTGTTTTAA
GCTTGTCCCTTGTACAGAAGATCATGCATATATTTGTGAATTCAAAGTCG
ATTATGATGATAATGGAATATCACTGGTACAAGCCTTATCAACTAATATT
TGGCAACAAAGATGTCCATCTTGCATTGAGTGATTGGTTTTTCTACTCCA
AGCTATAATATGTACCGATTTTTCATATCTCTTTTGGATAAATTCTGAAT
ACACTTTTGAAATAAAAAGATATTGCCACTTTCCGGACTCATAAATGCAT
TTATTTATCAAATTATATTTAATATTACTTTAATGTTTGATGATAATCAA
TTTTCAAACATTTGCCTAGGCATAGAGGGCCTAGGCTACACGCATCCCTC
TCACGGCCCACGCCATGAAATTGAAAGCGCCCCCACCCCCTGAATATAGA
GCCTAAGGCGGCGCAACCAGATATTTTTACTTTCCAAAAAAGTGGGGGCC
ATGGTCCAACTGCAACCCCCAGTGGCGTGGGCCCTCCCAGCTGGCACACA
ACGTTGTTTCAACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAGA
TAAACGTTGAAACAACGTTGTGTGCCAGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056823-exon-scaffold_283-1575043694:78038..78705 | TCONS_00056823-exon-scaffold_283-1575043694:78038..78705 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1575043694:76308..76355 | TCONS_00056823-exon-scaffold_283-1575043694:76308..76355 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1575043694:75474..76178 | TCONS_00056823-exon-scaffold_283-1575043694:75474..76178 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1510915933:78038..78705 | TCONS_00056823-exon-scaffold_283-1510915933:78038..78705 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1510915933:76308..76355 | TCONS_00056823-exon-scaffold_283-1510915933:76308..76355 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1510915933:75474..76178 | TCONS_00056823-exon-scaffold_283-1510915933:75474..76178 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1491911889:78038..78705 | TCONS_00056823-exon-scaffold_283-1491911889:78038..78705 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1491911889:76308..76355 | TCONS_00056823-exon-scaffold_283-1491911889:76308..76355 | Clytia hemisphaerica | exon |
| TCONS_00056823-exon-scaffold_283-1491911889:75474..76178 | TCONS_00056823-exon-scaffold_283-1491911889:75474..76178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_283 | supercontig | scaffold_283:75474..78705 - |
Blast
The following BLAST results are available for this feature:
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