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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056838 ID=TCONS_00056838|Name=TCONS_00056838|organism=Clytia hemisphaerica|type=transcript|length=793bp
CTCCTCCTTCGTTTCCCTCGTAATGTTCTGCTCCAACGCTTGCTTTTGCA
AAACTTGGTTCATTTGGTTGAAGAAGTTTTCAATTGGGTTTAGGTCAGGT
GAACGGGGTGGTATACAGAAGACCAAAGCCTATACCCTTTCGTAGGCTTG
CATTGCTTTCTTTGACTTCTGTCGTGGACAGTTGTTCATCAGAAACCGGA
GGGTGATGGGGTTGGAGCTCTTTTGAAAAGAGGTGTCAAAGTGCTCATCG
ACAATGTTTGCCATTTTCTCGGCGGTGATGCTCCCATAATACGGTTGGCA
CAACACAACCCCTTTGCCATGGCTTATCGCTACCATAAAATTGACATTGA
CAACGCCTGCCTTACTGCATTTCCTCGTCAGACCAAATTCAAGACCTTCA
TTCCTCTTCCTCCACTGGCATACCCTCGGCGCACGTGCTTGGTCTTGGGG
GTTGGTTTTAAATTGGAAATCTTTAGCGTCCAAGTAGAAAGAAATTCCAC
GCCGCCAAAAATCAAgcccaagcttcttctttctGATTGTTTTACAAAAC
CTCAGTCTTGACTTCAAGTCTTTACGTGTTAACAAGCCCTTGCGACGGCC
TTGTAAAAAGCGGTAACCACCCTGACTTAGAGCCCGTCGGACGGAACGAT
TGGAGATATATGTAACCCCAGAAATGACTTTGATTCTGCCAGATGTGAAG
TTCGCACCTTCAGAATTCCTTAATGTTTTCACTGCTCGCAAAATTGCCCG
TCTGTCTTGATCGCTTATTTTGCTCGGTCGTCCTCCAGCGTTC Run BLAST on NCBI protein sequence of TCONS_00056838-protein >TCONS_00056838-protein ID=TCONS_00056838-protein|Name=TCONS_00056838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
NAGGRPSKISDQDRRAILRAVKTLRNSEGANFTSGRIKVISGVTYISNRS
VRRALSQGGYRFLQGRRKGLLTRKDLKSRLRFCKTIRKKKLGLDFWRRGI
SFYLDAKDFQFKTNPQDQARAPRVCQWRKRNEGLEFGLTRKCSKAGVVNV
NFMVAISHGKGVVLCQPYYGSITAEKMANIVDEHFDTSFQKSSNPITLRF
LMNNCPRQKSKKAMQAYERV Run BLAST on NCBI transcript from alignment at scaffold_283:136272..137064 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056838 ID=TCONS_00056838|Name=TCONS_00056838|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at scaffold_283:136272..137064 (Clytia hemisphaerica)
GAACGCTGGAGGACGACCGAGCAAAATAAGCGATCAAGACAGACGGGCAA
TTTTGCGAGCAGTGAAAACATTAAGGAATTCTGAAGGTGCGAACTTCACA
TCTGGCAGAATCAAAGTCATTTCTGGGGTTACATATATCTCCAATCGTTC
CGTCCGACGGGCTCTAAGTCAGGGTGGTTACCGCTTTTTACAAGGCCGTC
GCAAGGGCTTGTTAACACGTAAAGACTTGAAGTCAAGACTGAGGTTTTGT
AAAACAATCagaaagaagaagcttgggcTTGATTTTTGGCGGCGTGGAAT
TTCTTTCTACTTGGACGCTAAAGATTTCCAATTTAAAACCAACCCCCAAG
ACCAAGCACGTGCGCCGAGGGTATGCCAGTGGAGGAAGAGGAATGAAGGT
CTTGAATTTGGTCTGACGAGGAAATGCAGTAAGGCAGGCGTTGTCAATGT
CAATTTTATGGTAGCGATAAGCCATGGCAAAGGGGTTGTGTTGTGCCAAC
CGTATTATGGGAGCATCACCGCCGAGAAAATGGCAAACATTGTCGATGAG
CACTTTGACACCTCTTTTCAAAAGAGCTCCAACCCCATCACCCTCCGGTT
TCTGATGAACAACTGTCCACGACAGAAGTCAAAGAAAGCAATGCAAGCCT
ACGAAAGGGTATAGGCTTTGGTCTTCTGTATACCACCCCGTTCACCTGAC
CTAAACCCAATTGAAAACTTCTTCAACCAAATGAACCAAGTTTTGCAAAA
GCAAGCGTTGGAGCAGAACATTACGAGGGAAACGAAGGAGGAG Coding sequence (CDS) from alignment at scaffold_283:136272..137064 >TCONS_00056838 ID=TCONS_00056838|Name=TCONS_00056838|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_283:136272..137064 (Clytia hemisphaerica)
AACGCTGGAGGACGACCGAGCAAAATAAGCGATCAAGACAGACGGGCAAT
TTTGCGAGCAGTGAAAACATTAAGGAATTCTGAAGGTGCGAACTTCACAT
CTGGCAGAATCAAAGTCATTTCTGGGGTTACATATATCTCCAATCGTTCC
GTCCGACGGGCTCTAAGTCAGGGTGGTTACCGCTTTTTACAAGGCCGTCG
CAAGGGCTTGTTAACACGTAAAGACTTGAAGTCAAGACTGAGGTTTTGTA
AAACAATCagaaagaagaagcttgggcTTGATTTTTGGCGGCGTGGAATT
TCTTTCTACTTGGACGCTAAAGATTTCCAATTTAAAACCAACCCCCAAGA
CCAAGCACGTGCGCCGAGGGTATGCCAGTGGAGGAAGAGGAATGAAGGTC
TTGAATTTGGTCTGACGAGGAAATGCAGTAAGGCAGGCGTTGTCAATGTC
AATTTTATGGTAGCGATAAGCCATGGCAAAGGGGTTGTGTTGTGCCAACC
GTATTATGGGAGCATCACCGCCGAGAAAATGGCAAACATTGTCGATGAGC
ACTTTGACACCTCTTTTCAAAAGAGCTCCAACCCCATCACCCTCCGGTTT
CTGATGAACAACTGTCCACGACAGAAGTCAAAGAAAGCAATGCAAGCCTA
CGAAAGGGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056838-exon-scaffold_283-1491911889:136272..137064 | TCONS_00056838-exon-scaffold_283-1491911889:136272..137064 | Clytia hemisphaerica | exon |
| TCONS_00056838-exon-scaffold_283-1510915933:136272..137064 | TCONS_00056838-exon-scaffold_283-1510915933:136272..137064 | Clytia hemisphaerica | exon |
| TCONS_00056838-exon-scaffold_283-1575043694:136272..137064 | TCONS_00056838-exon-scaffold_283-1575043694:136272..137064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_283 | supercontig | scaffold_283:136272..137064 . |
Blast
The following BLAST results are available for this feature:
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