|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056839 ID=TCONS_00056839|Name=TCONS_00056839|organism=Clytia hemisphaerica|type=transcript|length=1358bp
CAAATATGCAAAAGATATGGAATTGAAATACCGGCTGGTAATTGAGACAG
TTGAAGGCGAGTCCCGTGTTTGGAGTAATATGGATGGCGAGGATACACTT
ATAGTTGATACATGGCGCAAAGCAAGGGAGCAATCTGCAGCAGTACCAAG
CCAAATTAGTACTACAAAAGAGACACAGATAACCACGGTGAAGACCAACC
ACACTACTATAAGGCCGAAGAAGAAAAACAGACAGGCGTCGTTCAAGTTG
CTGCCCGACGACCCATCCTCTAAAATGAGTCAAGTGAAAAATTTGCCTGG
CAAGCAGCCTAAAGCCACAGAAAAAAAGGCTGCTGGGCAGGTCTCACGCT
GTGAGATCTGCAAGATAGTCTATGGTTCCAAAAAGGATGATGCCTTTCAA
AAAGAACATTCTATCAATGCGGAATATATGGGCTGTGGAGATTGCGAATA
TTGGGTTCACGTTATCTGTGCGGGGTACAACGTCAATTCTCAGAAAGATA
TTGATGAAATAGAATTCAAGTGCCCCAAACATACCACCAAGAAAGAGAAA
ATGTCACGTGATCTTCAATTGATAGAAGAGCCTAGTGCATCCATCTCACA
AACAATCAAGACAGTTATCCCAACCGCCCCATCTATGGAACAATATGAAA
GCCACGAAAGCAAACAGCCTCCTAAAAGACGTAAGTTGAAGGCGGCTAAG
ATAAAAGAACCAACCACCTCATCGTTGGAGCAATCTGAACGTCGCTCGAT
CGAAACAGGAATGGGAGCACGGTCCTCTACAAGGATTGCTTTGCGTAAGA
GTATAAATTAACCGCATCAGAATGTGTGTATGACATTATGTAAGATGTAT
TTCCGTGTTTTTGGTTTTCCTGGCAAGCATTTGTAGGCTTGTTTCACCTA
ACATGTTGCCTTATTTACTCGTTGTTCTTCTGGGGTTGTCGATGTTGTAG
GGAGTGATTTTATTTCTTCCGCACACTCTagtatttttaaagatttaacg
TTTATATTTGCGGCTCAAATTAACTGGCGGAAGAGAGCTTTGCTTGAAAT
TCTTACCGTTTCCAGCTTCTCTAACAGCCTCGTACATTTCAACCATTGCT
CTGACGATGGAATTCCTGTTTTTGGAAGccaaaatttcagttttttattG
ATCTCTTCTAAAAGGGCGTCACCTATGGAAGGAAAAGTTTATTGTAGGTT
TGCAAACTGATATTTTTGTTACGTAGGATAGTATCGTCTACTTTGTACGA
TTTAATGCTGCCATAGCAGGCTTTTGTAATTTGAGTTATATTTTCCAGCT
GTGTGGAATTGTATCCAGATAATgaagttgaaatattttttcagataTTA
AAATGACC Run BLAST on NCBI protein sequence of TCONS_00056839-protein >TCONS_00056839-protein ID=TCONS_00056839-protein|Name=TCONS_00056839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
KYAKDMELKYRLVIETVEGESRVWSNMDGEDTLIVDTWRKAREQSAAVPS
QISTTKETQITTVKTNHTTIRPKKKNRQASFKLLPDDPSSKMSQVKNLPG
KQPKATEKKAAGQVSRCEICKIVYGSKKDDAFQKEHSINAEYMGCGDCEY
WVHVICAGYNVNSQKDIDEIEFKCPKHTTKKEKMSRDLQLIEEPSASISQ
TIKTVIPTAPSMEQYESHESKQPPKRRKLKAAKIKEPTTSSLEQSERRSI
ETGMGARSSTRIALRKSIN Run BLAST on NCBI transcript from alignment at scaffold_284:4485..6151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056839 ID=TCONS_00056839|Name=TCONS_00056839|organism=Clytia hemisphaerica|type=transcript|length=1667bp|location=Sequence derived from alignment at scaffold_284:4485..6151+ (Clytia hemisphaerica)
CAAATATGCAAAAGATATGGAATTGAAATACCGGCTGGTAATTGAGACAG
TTGAAGGCGAGTCCCGTGTTTGGAGTAATATGGATGGCGAGGTTCGTATT
TATTTCACAACTTTTCGTGGCTGTCACACTAATATTACACTGTTATATTT
CCTGTTAGTGTTTTTGAATCGGGATTGGCTATTGACTGGTTTCTTTTGTT
GCATTTGAACAGGATACACTTATAGTTGATACATGGCGCAAAGCAAGGGA
GCAATCTGCAGCAGTACCAAGCCAAATTAGTACTACAAAAGAGACACAGA
TAACCACGGTAGGTATTTCATTAATCATCATATCAATGTTGTGTTTTAGG
TAGGGCATGAAAGCTTTTGTAATTTTATGTTTGGTTCCAGTTTCTTAGGT
TCCATACTTCACATTGTTATTTGCAAACATAACCAATTTAGTTTTGCTGA
AGGAATATTTCCAAGTTTAACCAGATAGCATTTTTTGTAACTATAGGTGA
AGACCAACCACACTACTATAAGGCCGAAGAAGAAAAACAGACAGGCGTCG
TTCAAGTTGCTGCCCGACGACCCATCCTCTAAAATGAGTCAAGTGAAAAA
TTTGCCTGGCAAGCAGCCTAAAGCCACAGAAAAAAAGGCTGCTGGGCAGG
TCTCACGCTGTGAGATCTGCAAGATAGTCTATGGTTCCAAAAAGGATGAT
GCCTTTCAAAAAGAACATTCTATCAATGCGGAATATATGGGCTGTGGAGA
TTGCGAATATTGGGTTCACGTTATCTGTGCGGGGTACAACGTCAATTCTC
AGAAAGATATTGATGAAATAGAATTCAAGTGCCCCAAACATACCACCAAG
AAAGAGAAAATGTCACGTGATCTTCAATTGATAGAAGAGCCTAGTGCATC
CATCTCACAAACAATCAAGACAGTTATCCCAACCGCCCCATCTATGGAAC
AATATGAAAGCCACGAAAGCAAACAGCCTCCTAAAAGACGTAAGTTGAAG
GCGGCTAAGATAAAAGAACCAACCACCTCATCGTTGGAGCAATCTGAACG
TCGCTCGATCGAAACAGGAATGGGAGCACGGTCCTCTACAAGGATTGCTT
TGCGTAAGAGTATAAATTAACCGCATCAGAATGTGTGTATGACATTATGT
AAGATGTATTTCCGTGTTTTTGGTTTTCCTGGCAAGCATTTGTAGGCTTG
TTTCACCTAACATGTTGCCTTATTTACTCGTTGTTCTTCTGGGGTTGTCG
ATGTTGTAGGGAGTGATTTTATTTCTTCCGCACACTCTagtatttttaaa
gatttaacgTTTATATTTGCGGCTCAAATTAACTGGCGGAAGAGAGCTTT
GCTTGAAATTCTTACCGTTTCCAGCTTCTCTAACAGCCTCGTACATTTCA
ACCATTGCTCTGACGATGGAATTCCTGTTTTTGGAAGccaaaatttcagt
tttttattGATCTCTTCTAAAAGGGCGTCACCTATGGAAGGAAAAGTTTA
TTGTAGGTTTGCAAACTGATATTTTTGTTACGTAGGATAGTATCGTCTAC
TTTGTACGATTTAATGCTGCCATAGCAGGCTTTTGTAATTTGAGTTATAT
TTTCCAGCTGTGTGGAATTGTATCCAGATAATgaagttgaaatatttttt
cagataTTAAAATGACC Coding sequence (CDS) from alignment at scaffold_284:4485..6151+ >TCONS_00056839 ID=TCONS_00056839|Name=TCONS_00056839|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_284:4485..6151+ (Clytia hemisphaerica)
AAATATGCAAAAGATATGGAATTGAAATACCGGCTGGTAATTGAGACAGT
TGAAGGCGAGTCCCGTGTTTGGAGTAATATGGATGGCGAGGATACACTTA
TAGTTGATACATGGCGCAAAGCAAGGGAGCAATCTGCAGCAGTACCAAGC
CAAATTAGTACTACAAAAGAGACACAGATAACCACGGTGAAGACCAACCA
CACTACTATAAGGCCGAAGAAGAAAAACAGACAGGCGTCGTTCAAGTTGC
TGCCCGACGACCCATCCTCTAAAATGAGTCAAGTGAAAAATTTGCCTGGC
AAGCAGCCTAAAGCCACAGAAAAAAAGGCTGCTGGGCAGGTCTCACGCTG
TGAGATCTGCAAGATAGTCTATGGTTCCAAAAAGGATGATGCCTTTCAAA
AAGAACATTCTATCAATGCGGAATATATGGGCTGTGGAGATTGCGAATAT
TGGGTTCACGTTATCTGTGCGGGGTACAACGTCAATTCTCAGAAAGATAT
TGATGAAATAGAATTCAAGTGCCCCAAACATACCACCAAGAAAGAGAAAA
TGTCACGTGATCTTCAATTGATAGAAGAGCCTAGTGCATCCATCTCACAA
ACAATCAAGACAGTTATCCCAACCGCCCCATCTATGGAACAATATGAAAG
CCACGAAAGCAAACAGCCTCCTAAAAGACGTAAGTTGAAGGCGGCTAAGA
TAAAAGAACCAACCACCTCATCGTTGGAGCAATCTGAACGTCGCTCGATC
GAAACAGGAATGGGAGCACGGTCCTCTACAAGGATTGCTTTGCGTAAGAG
TATAAATTAAAAATATGCAAAAGATATGGAATTGAAATACCGGCTGGTAA
TTGAGACAGTTGAAGGCGAGTCCCGTGTTTGGAGTAATATGGATGGCGAG
GATACACTTATAGTTGATACATGGCGCAAAGCAAGGGAGCAATCTGCAGC
AGTACCAAGCCAAATTAGTACTACAAAAGAGACACAGATAACCACGGTGA
AGACCAACCACACTACTATAAGGCCGAAGAAGAAAAACAGACAGGCGTCG
TTCAAGTTGCTGCCCGACGACCCATCCTCTAAAATGAGTCAAGTGAAAAA
TTTGCCTGGCAAGCAGCCTAAAGCCACAGAAAAAAAGGCTGCTGGGCAGG
TCTCACGCTGTGAGATCTGCAAGATAGTCTATGGTTCCAAAAAGGATGAT
GCCTTTCAAAAAGAACATTCTATCAATGCGGAATATATGGGCTGTGGAGA
TTGCGAATATTGGGTTCACGTTATCTGTGCGGGGTACAACGTCAATTCTC
AGAAAGATATTGATGAAATAGAATTCAAGTGCCCCAAACATACCACCAAG
AAAGAGAAAATGTCACGTGATCTTCAATTGATAGAAGAGCCTAGTGCATC
CATCTCACAAACAATCAAGACAGTTATCCCAACCGCCCCATCTATGGAAC
AATATGAAAGCCACGAAAGCAAACAGCCTCCTAAAAGACGTAAGTTGAAG
GCGGCTAAGATAAAAGAACCAACCACCTCATCGTTGGAGCAATCTGAACG
TCGCTCGATCGAAACAGGAATGGGAGCACGGTCCTCTACAAGGATTGCTT
TGCGTAAGAGTATAAATTAAAAATATGCAAAAGATATGGAATTGAAATAC
CGGCTGGTAATTGAGACAGTTGAAGGCGAGTCCCGTGTTTGGAGTAATAT
GGATGGCGAGGATACACTTATAGTTGATACATGGCGCAAAGCAAGGGAGC
AATCTGCAGCAGTACCAAGCCAAATTAGTACTACAAAAGAGACACAGATA
ACCACGGTGAAGACCAACCACACTACTATAAGGCCGAAGAAGAAAAACAG
ACAGGCGTCGTTCAAGTTGCTGCCCGACGACCCATCCTCTAAAATGAGTC
AAGTGAAAAATTTGCCTGGCAAGCAGCCTAAAGCCACAGAAAAAAAGGCT
GCTGGGCAGGTCTCACGCTGTGAGATCTGCAAGATAGTCTATGGTTCCAA
AAAGGATGATGCCTTTCAAAAAGAACATTCTATCAATGCGGAATATATGG
GCTGTGGAGATTGCGAATATTGGGTTCACGTTATCTGTGCGGGGTACAAC
GTCAATTCTCAGAAAGATATTGATGAAATAGAATTCAAGTGCCCCAAACA
TACCACCAAGAAAGAGAAAATGTCACGTGATCTTCAATTGATAGAAGAGC
CTAGTGCATCCATCTCACAAACAATCAAGACAGTTATCCCAACCGCCCCA
TCTATGGAACAATATGAAAGCCACGAAAGCAAACAGCCTCCTAAAAGACG
TAAGTTGAAGGCGGCTAAGATAAAAGAACCAACCACCTCATCGTTGGAGC
AATCTGAACGTCGCTCGATCGAAACAGGAATGGGAGCACGGTCCTCTACA
AGGATTGCTTTGCGTAAGAGTATAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056839-exon-scaffold_284-1491911889:4485..4575 | TCONS_00056839-exon-scaffold_284-1491911889:4485..4575 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1510915933:4485..4575 | TCONS_00056839-exon-scaffold_284-1510915933:4485..4575 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1575043694:4485..4575 | TCONS_00056839-exon-scaffold_284-1575043694:4485..4575 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1491911889:4697..4792 | TCONS_00056839-exon-scaffold_284-1491911889:4697..4792 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1510915933:4697..4792 | TCONS_00056839-exon-scaffold_284-1510915933:4697..4792 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1575043694:4697..4792 | TCONS_00056839-exon-scaffold_284-1575043694:4697..4792 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1491911889:4981..6151 | TCONS_00056839-exon-scaffold_284-1491911889:4981..6151 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1510915933:4981..6151 | TCONS_00056839-exon-scaffold_284-1510915933:4981..6151 | Clytia hemisphaerica | exon |
| TCONS_00056839-exon-scaffold_284-1575043694:4981..6151 | TCONS_00056839-exon-scaffold_284-1575043694:4981..6151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:4485..6151 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
