TCONS_00056911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056911
Unique NameTCONS_00056911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056911 ID=TCONS_00056911|Name=TCONS_00056911|organism=Clytia hemisphaerica|type=transcript|length=313bp
GCACAACTAATGTCAAAGCATCAGAAACTTGCCAATAAATGTTGGCCAAT
CTTCGTTCGAGTCAACCAAACAAAACGGCGATATATTGTCATCTTTGAAG
ACATTCCACGGTTTTGCTGTTTGTTTGCTTTGCTGTATCTATTTGGTGAT
ACGTTCGTTCGAATTCTTTATAAGAGATGGAAGAAACCAAGAACTAGTGG
GGTTGGTTTATTGTTCAACGATTACAGAGatgattggaaaaaaggttATC
ATTACATCCACGTCAAAGACGTCTTCCGAAAACATATTGTGGCACGAGAA
AAAGAAAGATGGG
Run BLAST on NCBI

protein sequence of TCONS_00056911-protein

>TCONS_00056911-protein ID=TCONS_00056911-protein|Name=TCONS_00056911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
AQLMSKHQKLANKCWPIFVRVNQTKRRYIVIFEDIPRFCCLFALLYLFGD
TFVRILYKRWKKPRTSGVGLLFNDYRDDWKKGYHYIHVKDVFRKHIVARE
KERW
Run BLAST on NCBI

transcript from alignment at scaffold_284:49809..50992-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056911 ID=TCONS_00056911|Name=TCONS_00056911|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at scaffold_284:49809..50992- (Clytia hemisphaerica)
GCACAACTAATGTCAAAGCATCAGAAACTTGCCAATAAATGTTGGCCAAT
CTTCGTTCGAGTCAACCAAACAAAACGGCGATATATTGTCATCTTTGAAG
ACATTCCACGGTTTTGCTGTTTGTTTGCTTTGCTGTATCTATTTGGTGAT
ACGTTCGTTCGAATTCTTTATAAGAGATGGAAGAAACCAAGAACTGTGAG
TACCAAAATTATTACAATGTTTTCAAGTTTATCATAACCACCACAGCCCC
TTTTTGCAGACCCNTTATTACAATGTTTTCAAGTTTATTATAACCACCAC
AGCCCCTTTTTGCAGACCCAGTACAATCTTTTTAGCCACTGGGGGTAAAA
CTCGTTGGGGTCGATATTCCCATTTTTTTCATGGCTTGATTTAAATTATT
TTGTTTTCAAGTCAGAAAATTCGTTGGGATAGGGAAAATAGCAAAATATT
TTGTAGCGAGGATTGGATTATTTGATTATTTTCAGTGAGACAAAAATTGG
AACTTAATTTTCCATCGGGGACGATATTTTGGTTAACTTTTACAGTAAGA
AAGAGTCCCAGTGGGTCTGTGAAAGGGGAGTGTATACCACCCAGCTGTCA
CAGAACATCAAAAATCAACGTACACTAACGTCCATAAAACGTATGGCTAA
TAATTCATCAGATCCAGCCGTGCTTGCTCCCTAAATCCATGAAATTTTTA
GTCTTCAAAAATGTTTTTTCCTGAGGATTCTGGAGTTTGCTTCAAGGGGA
AAACTTCTTTGGGGAAAGTTTTCGTCGGGGAAAAATATTCGTTACTTGCT
GGTAGTTGGTAAACGCATTAAGGCTGGGGAAAATTTTCGTCGGGGAAAAA
TGTTCGTCACTTGGCCAAAATTTCGTCACTTTTCCTTGACAAAATTATAA
AGGGAAAGGTAAACTTGTGAAAGTTTTTTTCGGATTGATTTCCATCCTGA
CTATTTTTCCCGGGAAAAGGAAGGAAGTTTTCTTACTAAAGTATCGTTCG
GTTCAAACACTATTACCATTTGTTCTCTTCTTGGTGATGACATGTGTAAA
AACGAATTTTTTTCAGAGTGGGGTTGGTTTATTGTTCAACGATTACAGAG
ATGATTGGAAAAAAGGTTATCATTACATCCACGTCAAAGACGTCTTCCGA
AAACATATTGTGGCACGAGAAAAAGAAAGATGGG

Coding sequence (CDS) from alignment at scaffold_284:49809..50992-

>TCONS_00056911 ID=TCONS_00056911|Name=TCONS_00056911|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_284:49809..50992- (Clytia hemisphaerica)
AGTGGGGTTGGTTTATTGTTCAACGATTACAGAGATGATTGGAAAAAAGG
TTATCATTACATCCACGTCAAAGACGTCTTCCGAAAACATATTGTGGCAC
GAGAAAAAGAAAGATGGGCACAACTAATGTCAAAGCATCAGAAACTTGCC
AATAAATGTTGGCCAATCTTCGTTCGAGTCAACCAAACAAAACGGCGATA
TATTGTCATCTTTGAAGACATTCCACGGTTTTGCTGTTTGTTTGCTTTGC
TGTATCTATTTGGTGATACGTTCGTTCGAATTCTTTATAAGAGATGGAAG
AAACCAAGAACTAGTGGGGTTGGTTTATTGTTCAACGATTACAGAGATGA
TTGGAAAAAAGGTTATCATTACATCCACGTCAAAGACGTCTTCCGAAAAC
ATATTGTGGCACGAGAAAAAGAAAGATGGGCACAACTAATGTCAAAGCAT
CAGAAACTTGCCAATAAATGTTGGCCAATCTTCGTTCGAGTCAACCAAAC
AAAACGGCGATATATTGTCATCTTTGAAGACATTCCACGGTTTTGCTGTT
TGTTTGCTTTGCTGTATCTATTTGGTGATACGTTCGTTCGAATTCTTTAT
AAGAGATGGAAGAAACCAAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035853XLOC_035853Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056911-proteinTCONS_00056911-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056911-exon-scaffold_284-1575043694:50798..50992TCONS_00056911-exon-scaffold_284-1575043694:50798..50992Clytia hemisphaericaexon
TCONS_00056911-exon-scaffold_284-1575043694:49809..49926TCONS_00056911-exon-scaffold_284-1575043694:49809..49926Clytia hemisphaericaexon
TCONS_00056911-exon-scaffold_284-1510915933:50798..50992TCONS_00056911-exon-scaffold_284-1510915933:50798..50992Clytia hemisphaericaexon
TCONS_00056911-exon-scaffold_284-1510915933:49809..49926TCONS_00056911-exon-scaffold_284-1510915933:49809..49926Clytia hemisphaericaexon
TCONS_00056911-exon-scaffold_284-1491911889:50798..50992TCONS_00056911-exon-scaffold_284-1491911889:50798..50992Clytia hemisphaericaexon
TCONS_00056911-exon-scaffold_284-1491911889:49809..49926TCONS_00056911-exon-scaffold_284-1491911889:49809..49926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:49809..50992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.13908	3.10965	4.16223	3.69423	2.46482	4.87114	1.72755	1.36274	3.46271	4.83056	1.4269	2.53901	0.642068	1.09911	1.75898	2.75039	0.385305	0.592345	0.929181	1.69924	3.15145	3.65615	0.93524	1.99623	1.64337	0.771297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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