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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056855 ID=TCONS_00056855|Name=TCONS_00056855|organism=Clytia hemisphaerica|type=transcript|length=582bp
aaaaaggtgAAACTACTTATAACTTGTGTAACTTGTGATTTTTATCTAGG
TTTTTATCTTCAGATGCACATGGTCATTTTGCTGTAATCATGGAAGTATT
TCAGTATTAAGTAGTATTATTATCAggaATGGAAATGGTAAACTACACGT
TAATCAAGCAAAACAAGCCCGATTGAATAATTTGTTGCGAAGATGAAgat
caaaaagtgaaaataattagGTCACTCCAATAAACCCCCACGCTTGGGCG
ATTGACGTTCTTTTATGATGCGATTTCTAGAAAGTTCGAAAGAAGAAAGA
CGAGGCCTTGCTGGGTCGAAATCCGCAGCTCATGCAGTTTTTCGTTCTTC
CGTATTCTTCGATTGAAGTTGCTAGATTACATTTCACAACGAAGAGACGT
TTCGATGCATAAATTGGATAATTACTAATGCTTATATATGTTAAATCAAT
CAACCATTGTAACTGATGAAGGACCTCAGCTGAAGTTCTGTCTCCTAATG
TCCCATACGAAAACTAATCATGTTAATAACAAGACTGGTGTCATAAAAGT
GCCtcaaaagaaatcaataaaatcatttgTCG Run BLAST on NCBI transcript from alignment at scaffold_284:311999..314763+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056855 ID=TCONS_00056855|Name=TCONS_00056855|organism=Clytia hemisphaerica|type=transcript|length=2765bp|location=Sequence derived from alignment at scaffold_284:311999..314763+ (Clytia hemisphaerica)
aaaaaggtgAAACTACTTATAACTTGTGTAACTTGTGATTTTTATCTAGG
TTTTTATCTTCAGATGCACATGGTCATTTTGCTGTAATCATGGAAGTATT
TCAGTATTAAGTAGTATTATTATCAGTAAGTATTTTTATGCATTCATTTT
TATTAGgaacagaccagatatgcaacagtcccatgtttcgaccaatcgtc
ccaacaagttagagcagttgacggtactttGATTAAAATCATGCCCCAGA
AATTTAAGGACCGtcagtctaagcttaaactccCATATCAGGAGTAAAac
ctaggctagtcttacctcttttatctttccctatacatcaatacaatgct
ggcaagttgacacaacattattgacaagtaatccctgtaAGAGAAGTTga
tatcgaaatctgcaacaaaaatgaaagtagttatttctactgattgcttc
ccagcacTCCTTCGCAGTTGTTTagcaaatttccaccaatgagattgcca
CATTTCACACGCCCCTTCTTGGCTTCTGAGTGCCTTGCATGACGaacggc
tgtaaaatcccaccttCATAATCATacatccagacggtgtcaatcgaaca
acttcgaacaaaaagcgcaatcgaaccaattgaacgtaatcgaatgcgat
cgaataattgcaatttgattgtcaaacgtaatcgaatctcaatcgaacga
cCGATTCCTGGGTTATATTTGGTTCTAACCCTCTTGGCGACCAGGGCTTG
GGTAGAATCACACAAACAAATCACTGTATTAATCGGATTAATGCACAGGG
GAATAGGAATGGCCAAATACCATGTAccgtggtttttctaatttaacgcg
taGTCTAATTTAATTTGTACCCTgtttttggcgaaaaatcgtAATTAATC
TTACTCTAATTATTAACGCGTagccaaaattctgcataattaatTTCACT
CTAATTATTACGCGTGATCAAGCCTTGGACAAGAAAAATTAGACaggaaa
gttttatttttgataaacttctttctttcaaaaacacaAATTCAAGGGAT
CTTCGTCATCCTCCTCTGGCTCCTCCAAATCAGCTAATGCTTGTTAATAC
ATTATACGATCTATATGTAATATATATTACACAAGCCTTTAACGCGTACT
TAAAACACTTGAATATCATAATTAATAAATAATTGTTCTCTAGTTTTTCA
CGCGTAGCGTCGAAaataattctcaacttcagttgagttagaatctgaga
atgtgtgtgtgtgtctgtctgtgtgtatgtcccaaaactttcatttttca
aaatttttgatttttggggcctggggacgagttttcgccaaaacgcggct
aaaactttggggcagcctcgagacttcaaaaattgttcaatttggctgaa
attttgcacacttgttccttgggtgaatatctgggggtgtttttttcatt
tttcaaaaattttgatttttggggcctggggacgagtttttcgccaaaac
gaggctaaaattttggggcagcctggagacttcaaaaattgttcgatctg
gctgaaattttgcacacttgttccttgggtgaatatctgggggtgttttt
ttcatttttcaaaaattttgatttttggggcctggggacgagtttttcgc
caaaacgaggctaaaattttggggcagcctggagacttcataaattgttc
gatctggctggaattttgcacacttgttccttgggtgaatatctgggggt
gctttttgcatttttcaaaaatttagatttttggggcctggggacgagtt
ttttgccaaaacaaggctaaagctttgaagcagcctacaggcctccaaaa
tggtcggatttggttgaaatttggcacacttgttcattgggtaaatatct
gggggtctacaattgggcctatgaataatttgaagccactgaagttgagc
ccagtgcgttgcgcacgttcgactattattTATTGCCATGtgttaaatta
gaaaaatcacGGTAGGGTTGTGTTTTTTAGCGAATATAAAGaaatcgata
ttaatcgataGCAATCGAAAACAATCAGCGATTAATCAATAGCAATTGAT
AACAATCGAATCCAATCGATAAGAACGTAAAGTCTTAGTATCGATTGGCT
AttgattgtttatcgattagtTATCAATCACtatcgattattatcgatta
aaatcgattaataTCAATTGATTTCTCGTATCGATTTCATCGATTGGGTA
CACCTGGTTATTTACGTTTTCTCCGCGTTGATTGCttcgttttctttcat
tttttcagggaATGGAAATGGTAAACTACACGTTAATCAAGCAAAACAAG
CCCGATTGAATAATTTGTTGCGAAGATGAAgatcaaaaagtgaaaataat
tagGTCACTCCAATAAACCCCCACGCTTGGGCGATTGACGTTCTTTTATG
ATGCGATTTCTAGAAAGTTCGAAAGAAGAAAGACGAGGCCTTGCTGGGTC
GAAATCCGCAGCTCATGCAGTTTTTCGTTCTTCCGTATTCTTCGATTGAA
GTTGCTAGATTACATTTCACAACGAAGAGACGTTTCGATGCATAAATTGG
ATAATTACTAATGCTTATATATGTTAAATCAATCAACCATTGTAACTGAT
GAAGGACCTCAGCTGAAGTTCTGTCTCCTAATGTCCCATACGAAAACTAA
TCATGTTAATAACAAGACTGGTGTCATAAAAGTGCCtcaaaagaaatcaa
taaaatcatttgTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056855-exon-scaffold_284-1491911889:311999..312123 | TCONS_00056855-exon-scaffold_284-1491911889:311999..312123 | Clytia hemisphaerica | exon |
| TCONS_00056855-exon-scaffold_284-1510915933:311999..312123 | TCONS_00056855-exon-scaffold_284-1510915933:311999..312123 | Clytia hemisphaerica | exon |
| TCONS_00056855-exon-scaffold_284-1575043694:311999..312123 | TCONS_00056855-exon-scaffold_284-1575043694:311999..312123 | Clytia hemisphaerica | exon |
| TCONS_00056855-exon-scaffold_284-1491911889:314307..314763 | TCONS_00056855-exon-scaffold_284-1491911889:314307..314763 | Clytia hemisphaerica | exon |
| TCONS_00056855-exon-scaffold_284-1510915933:314307..314763 | TCONS_00056855-exon-scaffold_284-1510915933:314307..314763 | Clytia hemisphaerica | exon |
| TCONS_00056855-exon-scaffold_284-1575043694:314307..314763 | TCONS_00056855-exon-scaffold_284-1575043694:314307..314763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:311999..314763 + |
Blast
The following BLAST results are available for this feature:
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