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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056858 ID=TCONS_00056858|Name=TCONS_00056858|organism=Clytia hemisphaerica|type=transcript|length=887bp
agACTAGTCTGAGACTAAGTCACTATATGCAAGATAAGCTTTAAAGCCAA
AGGGCAATTAAGGAACAGGTTTTACTGTCGAAGCAAAATTTCAACCCGTA
GAGTTAGTGATCTTCTTTGGTATCATCCAAAGATGTGGTAATCTCTACAA
AGGTAATTGCTTCTCATTACCGGCTGTAAACCATCTATATTTGCCTGTGT
TTATCCTCCCTAAAAACGGGTCACATTCGGATATCTAGAGCTGCAGATCT
CTTTTAAATCGAGCTCGATTTAGTATAAATGtagatatttccaattttaa
TACATTTTAATACATAATTAGTATGTAGATTATTTTTAATGAATGATCTT
ATTTTTGATGGGGaaaactaccttaaaggaattatacggtgttatataca
cccgactcgtctgaaactgatgtcagcaaaattttgataaaaggaagaaa
aaaatcttgctccacatttttctttacttaatcaacatacattataacta
tgtaaaaggtcaatggctttaagTGGAAatccttttgaatttttttttta
attttttttggggttttgaaaaaaatcataatttgaTTTCCAAATTTCCA
AACTTCCAAACTCATGACATGAACTTATGTTTGTCCACTTGGGTAAAATT
GAGATTAGTTGTAGTATGTAAAGGCTagctatttttttataatggaaaaT
ACGCATAATGTAATAAACGCTATTGATAAAATAGTTGTAAAGCAAGACTA
AAATTTGCTTTCTGACAACGAGCCACTTATGACAAGGGTaataattttgc
aaattttaaaaattccttTAAAACACTAAGGTAGCAGAAGTTATTTAATA
ATGTCCTCAAAATAAACGAACTGTAATAAAAAGTCCA Run BLAST on NCBI transcript from alignment at scaffold_284:339310..340307+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056858 ID=TCONS_00056858|Name=TCONS_00056858|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at scaffold_284:339310..340307+ (Clytia hemisphaerica)
agACTAGTCTGAGACTAAGTCACTATATGCAAGATAAGCTTTAAAGCCAA
AGGGCAATTAAGGAACAGGTTTTACTGTCGAAGCAAAATTTCAACCCGTA
GAGTTAGTGATCTTCTTTGGTATCATCCAAAGATGTGGTAATCTCTACAA
AGGTAATTGCTTCTCATTACCGGCTGTAAACCATCTATATTTGCCTGTGT
TTATCCTCCCTAAAAACGGGTCACATATAACATCGTCCAACATTTGAACA
TCAAACGTGAATTGACAAAGATCCTCTTGTCCGTTGCATATCTTAGAGGA
AGGCCAGATGTTCAATTAATGGCTTTGAAGAGGTTACTCGGATATCTAGA
GCTGCAGATCTCTTTTAAATCGAGCTCGATTTAGTATAAATGtagatatt
tccaattttaaTACATTTTAATACATAATTAGTATGTAGATTATTTTTAA
TGAATGATCTTATTTTTGATGGGGaaaactaccttaaaggaattatacgg
tgttatatacacccgactcgtctgaaactgatgtcagcaaaattttgata
aaaggaagaaaaaaatcttgctccacatttttctttacttaatcaacata
cattataactatgtaaaaggtcaatggctttaagTGGAAatccttttgaa
ttttttttttaattttttttggggttttgaaaaaaatcataatttgaTTT
CCAAATTTCCAAACTTCCAAACTCATGACATGAACTTATGTTTGTCCACT
TGGGTAAAATTGAGATTAGTTGTAGTATGTAAAGGCTagctattttttta
taatggaaaaTACGCATAATGTAATAAACGCTATTGATAAAATAGTTGTA
AAGCAAGACTAAAATTTGCTTTCTGACAACGAGCCACTTATGACAAGGGT
aataattttgcaaattttaaaaattccttTAAAACACTAAGGTAGCAGAA
GTTATTTAATAATGTCCTCAAAATAAACGAACTGTAATAAAAAGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056858-exon-scaffold_284-1491911889:339310..339535 | TCONS_00056858-exon-scaffold_284-1491911889:339310..339535 | Clytia hemisphaerica | exon |
| TCONS_00056858-exon-scaffold_284-1510915933:339310..339535 | TCONS_00056858-exon-scaffold_284-1510915933:339310..339535 | Clytia hemisphaerica | exon |
| TCONS_00056858-exon-scaffold_284-1575043694:339310..339535 | TCONS_00056858-exon-scaffold_284-1575043694:339310..339535 | Clytia hemisphaerica | exon |
| TCONS_00056858-exon-scaffold_284-1491911889:339647..340307 | TCONS_00056858-exon-scaffold_284-1491911889:339647..340307 | Clytia hemisphaerica | exon |
| TCONS_00056858-exon-scaffold_284-1510915933:339647..340307 | TCONS_00056858-exon-scaffold_284-1510915933:339647..340307 | Clytia hemisphaerica | exon |
| TCONS_00056858-exon-scaffold_284-1575043694:339647..340307 | TCONS_00056858-exon-scaffold_284-1575043694:339647..340307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:339310..340307 + |
Blast
The following BLAST results are available for this feature:
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