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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056870 ID=TCONS_00056870|Name=TCONS_00056870|organism=Clytia hemisphaerica|type=transcript|length=1821bp
TCCTGAAGCTACAACCGAAGCTCCCGAAGTTACCACCGAAGTTTCTGAAG
TTACCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCCGAAGTTACCACC
GAAGCTCCTGAAGCTACAACCGATGCTCCTGAAGCTACAACCGAAGCTCC
CGAAGTTACCACCGAAGCTCCCGAAGTTACCACCGAAGCTCCCGAAGTTA
CCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCTGCAGTTACCACCGAA
GCTCCTGAAGTTACCACTGAAGCTCCAGAAGTCACCACAGAAGCTCCTGA
AGTTACCACCAAAGCTCCCGAAGTTACCACCGAAGCTCCTGAAGTGAGTA
CCACAGGATCGGAAGAAACCACTCAAGCACAAACAACTGAAGCTGAGACA
TGCAGTACACCCCATGACTACAGTGACCTACTCGGAAAATCGATGCTTTT
CTATAAAGCGCAACGATCAGGAATACTTCCTGACAACGATATCCCCTGGA
GACGCAACTCTTTCGAAAATGACGGTCAAGGACAAGGTCATGATCTATCT
GGTGGTTACTTTGACGCTGGAGATTATGTCAAATTCAACTTCCCAATGGC
TGCAGCAACAACAGTGTTAGCTTGGGGTATGGTTGATTTTGCTGATGGAT
ATAAGTTTGCTGGTAAATATGATGATGGATTGGCAACATTGAAATGGGCA
ACTGATTATTTCATTAAATGCCACACTGCAACAAATGAATTATATGGCCA
ATGTGGTATCGGTAAAGATGACCATGAAGTCTGGGGGCGAGAAGATGAAT
ATTACACAAACTCTGGTAAAGCTAACCCAAGACCATGCTACAAAGTCGAT
GCAAATAATCCAGGTTCTGATCTAGCCGGTGAAACATCAGCTGCTCTGGC
TGCTTCTTCCATTGCTTTTAAAGATTCGAACCCAGGTTATGCTACTACGC
TTTTACAACATGCTAAAGAGTTGTACACATTTGCTAAAACCTTCAAAGGA
GTTTATTCATCGAGTATCACAGATGCTCAATTCTTCTACAACTCCTTCAG
TGGTTACAACGATGAATTAGCATGGAGTGCTGCTTGGCTATACAAAGCTA
CCGACGAGGAAAAATATAGAACCGACGCTGAAGGGTTCTTCAATGAAATG
CAACAAAACCCAGGTGAATTCTCCTGGGACAACAAAGGTCGTGGTGTAGC
AGCTCTCTTATCACAGCTCACTGGGAAAGCAGTTTACAAACAAAACGTCG
ATAGCTTTTGCAACCAGATGCAGAACAACCAGCCGCGTAATCAATATGGA
TTGGTTTTCATCCAACAATGGGGATCAAATCGTCATGCAGCAAATGTCGC
TTTCATTTGCCTCGCTCATTCAAAAGCAACAGGTCAATTCAGCGCATTCG
GACGCAATCAAATCAATAAACTCCTTGGAGacgaatcaatcaatcaacgc
AGTTTTGTCGTCGGTTATGGCTTAAACCCGCCCAATCAACCTCATCATAG
ATCCTCTTCATGCCCGAACCGCCCAGCACCATGTGGATGGAACGAGTTCA
ATATCAAGGCCCCAAATCCACATGTTCTCACTGGGGCGTTAGTGGGCGGT
GCTCGATCAACAACTGATGTATATCAAGATAGAAGGGATGATTTTATCGA
AAATGAAATCACCCTTGATTATAATGCCGGCTTTCAATCTGCCCTTGCCG
CCCTTCTTGAGCTTCAAAAAGAAGGCGACTGCGgtcaaaaattaacattt
tgaaatattctaatATTCTGAGCTGATTAATTTTGGCGGCGATTAAATTT
Ggtgaattcaaaaaatgaaat Run BLAST on NCBI protein sequence of TCONS_00056870-protein >TCONS_00056870-protein ID=TCONS_00056870-protein|Name=TCONS_00056870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
PEATTEAPEVTTEVSEVTTEAPEVTTEAPEVTTEAPEATTDAPEATTEAP
EVTTEAPEVTTEAPEVTTEAPEVTTEAPAVTTEAPEVTTEAPEVTTEAPE
VTTKAPEVTTEAPEVSTTGSEETTQAQTTEAETCSTPHDYSDLLGKSMLF
YKAQRSGILPDNDIPWRRNSFENDGQGQGHDLSGGYFDAGDYVKFNFPMA
AATTVLAWGMVDFADGYKFAGKYDDGLATLKWATDYFIKCHTATNELYGQ
CGIGKDDHEVWGREDEYYTNSGKANPRPCYKVDANNPGSDLAGETSAALA
ASSIAFKDSNPGYATTLLQHAKELYTFAKTFKGVYSSSITDAQFFYNSFS
GYNDELAWSAAWLYKATDEEKYRTDAEGFFNEMQQNPGEFSWDNKGRGVA
ALLSQLTGKAVYKQNVDSFCNQMQNNQPRNQYGLVFIQQWGSNRHAANVA
FICLAHSKATGQFSAFGRNQINKLLGDESINQRSFVVGYGLNPPNQPHHR
SSSCPNRPAPCGWNEFNIKAPNPHVLTGALVGGARSTTDVYQDRRDDFIE
NEITLDYNAGFQSALAALLELQKEGDCGQKLTF Run BLAST on NCBI transcript from alignment at scaffold_284:714920..717158+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056870 ID=TCONS_00056870|Name=TCONS_00056870|organism=Clytia hemisphaerica|type=transcript|length=2239bp|location=Sequence derived from alignment at scaffold_284:714920..717158+ (Clytia hemisphaerica)
TCCTGAAGCTACAACCGAAGCTCCCGAAGTTACCACCGAAGTTTCTGAAG
TTACCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCCGAAGTTACCACC
GAAGCTCCTGAAGCTACAACCGATGCTCCTGAAGCTACAACCGAAGCTCC
CGAAGTTACCACCGAAGCTCCCGAAGTTACCACCGAAGCTCCCGAAGTTA
CCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCTGCAGTTACCACCGAA
GCTCCTGAAGTTACCACTGAAGCTCCAGAAGTCACCACAGAAGCTCCTGA
AGTTACCACCAAAGCTCCCGAAGTTACCACCGAAGCTCCTGAAGTGAGTA
CCACAGGATCGGAAGAAACCACTCAAGCACAAACAACTGAAGCTGAGACA
TGCAGTACACCCCATGACTACAGTGACCTACTCGGAAAATCGATGCTTTT
CTATAAAGCGCAACGATCAGGAATACTTCCTGACAACGATATCCCCTGGA
GACGCAACTCTTTCGAAAATGACGGTCAAGGACAAGGTCATGATCTATCT
GGTGGTTACTTTGACGCTGGAGATTATGTCAAATTCAACTTCCCAATGGC
TGCAGCAACAACAGTGTTAGCTTGGGGTATGGTTGATTTTGCTGATGGAT
ATAAGTTTGCTGGTAAATATGATGATGGATTGGCAACATTGAAATGGGCA
ACTGATTATTTCATTAAATGCCACACTGGTAAGAATGATTGAGTTTTAGG
TTGTTATTTTTTAAGTCTATCTTTTAGATAAAAAGTTATAGAAAAATCAA
atctaaattaaattaaaacgcATATTTAAAATCGGCGATgctcaaaattt
tagtaaaaatcttttttttggtcaattagaaaaacaaatattttaagtGT
AATCATTCCACactaaattatcttttcaaagaGGTATAATACCTTTAATG
ATATTAATAACAATGTACAAGAGTATGAACTActattttttttggaacag
acCTTAGCTAAATAAAACACGTTATTTTAAGAGAGACATCACCATTGAGA
ATTTTCTAATATTTAATAATAATATTTCTCTGCCAGTTAAGCCAGTCTCA
ATTTGGAAATTAAACCTCTTTACAATTTAAGTTCGTCATTTTTCAGCAAC
AAATGAATTATATGGCCAATGTGGTATCGGTAAAGATGACCATGAAGTCT
GGGGGCGAGAAGATGAATATTACACAAACTCTGGTAAAGCTAACCCAAGA
CCATGCTACAAAGTCGATGCAAATAATCCAGGTTCTGATCTAGCCGGTGA
AACATCAGCTGCTCTGGCTGCTTCTTCCATTGCTTTTAAAGATTCGAACC
CAGGTTATGCTACTACGCTTTTACAACATGCTAAAGAGTTGTACACATTT
GCTAAAACCTTCAAAGGAGTTTATTCATCGAGTATCACAGATGCTCAATT
CTTCTACAACTCCTTCAGTGGTTACAACGATGAATTAGCATGGAGTGCTG
CTTGGCTATACAAAGCTACCGACGAGGAAAAATATAGAACCGACGCTGAA
GGGTTCTTCAATGAAATGCAACAAAACCCAGGTGAATTCTCCTGGGACAA
CAAAGGTCGTGGTGTAGCAGCTCTCTTATCACAGCTCACTGGGAAAGCAG
TTTACAAACAAAACGTCGATAGCTTTTGCAACCAGATGCAGAACAACCAG
CCGCGTAATCAATATGGATTGGTTTTCATCCAACAATGGGGATCAAATCG
TCATGCAGCAAATGTCGCTTTCATTTGCCTCGCTCATTCAAAAGCAACAG
GTCAATTCAGCGCATTCGGACGCAATCAAATCAATAAACTCCTTGGAGac
gaatcaatcaatcaacgcAGTTTTGTCGTCGGTTATGGCTTAAACCCGCC
CAATCAACCTCATCATAGATCCTCTTCATGCCCGAACCGCCCAGCACCAT
GTGGATGGAACGAGTTCAATATCAAGGCCCCAAATCCACATGTTCTCACT
GGGGCGTTAGTGGGCGGTGCTCGATCAACAACTGATGTATATCAAGATAG
AAGGGATGATTTTATCGAAAATGAAATCACCCTTGATTATAATGCCGGCT
TTCAATCTGCCCTTGCCGCCCTTCTTGAGCTTCAAAAAGAAGGCGACTGC
GgtcaaaaattaacattttgaaatattctaatATTCTGAGCTGATTAATT
TTGGCGGCGATTAAATTTGgtgaattcaaaaaatgaaat Coding sequence (CDS) from alignment at scaffold_284:714920..717158+ >TCONS_00056870 ID=TCONS_00056870|Name=TCONS_00056870|organism=Clytia hemisphaerica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_284:714920..717158+ (Clytia hemisphaerica)
CCTGAAGCTACAACCGAAGCTCCCGAAGTTACCACCGAAGTTTCTGAAGT
TACCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCCGAAGTTACCACCG
AAGCTCCTGAAGCTACAACCGATGCTCCTGAAGCTACAACCGAAGCTCCC
GAAGTTACCACCGAAGCTCCCGAAGTTACCACCGAAGCTCCCGAAGTTAC
CACCGAAGCTCCTGAAGTTACCACCGAAGCTCCTGCAGTTACCACCGAAG
CTCCTGAAGTTACCACTGAAGCTCCAGAAGTCACCACAGAAGCTCCTGAA
GTTACCACCAAAGCTCCCGAAGTTACCACCGAAGCTCCTGAAGTGAGTAC
CACAGGATCGGAAGAAACCACTCAAGCACAAACAACTGAAGCTGAGACAT
GCAGTACACCCCATGACTACAGTGACCTACTCGGAAAATCGATGCTTTTC
TATAAAGCGCAACGATCAGGAATACTTCCTGACAACGATATCCCCTGGAG
ACGCAACTCTTTCGAAAATGACGGTCAAGGACAAGGTCATGATCTATCTG
GTGGTTACTTTGACGCTGGAGATTATGTCAAATTCAACTTCCCAATGGCT
GCAGCAACAACAGTGTTAGCTTGGGGTATGGTTGATTTTGCTGATGGATA
TAAGTTTGCTGGTAAATATGATGATGGATTGGCAACATTGAAATGGGCAA
CTGATTATTTCATTAAATGCCACACTGCAACAAATGAATTATATGGCCAA
TGTGGTATCGGTAAAGATGACCATGAAGTCTGGGGGCGAGAAGATGAATA
TTACACAAACTCTGGTAAAGCTAACCCAAGACCATGCTACAAAGTCGATG
CAAATAATCCAGGTTCTGATCTAGCCGGTGAAACATCAGCTGCTCTGGCT
GCTTCTTCCATTGCTTTTAAAGATTCGAACCCAGGTTATGCTACTACGCT
TTTACAACATGCTAAAGAGTTGTACACATTTGCTAAAACCTTCAAAGGAG
TTTATTCATCGAGTATCACAGATGCTCAATTCTTCTACAACTCCTTCAGT
GGTTACAACGATGAATTAGCATGGAGTGCTGCTTGGCTATACAAAGCTAC
CGACGAGGAAAAATATAGAACCGACGCTGAAGGGTTCTTCAATGAAATGC
AACAAAACCCAGGTGAATTCTCCTGGGACAACAAAGGTCGTGGTGTAGCA
GCTCTCTTATCACAGCTCACTGGGAAAGCAGTTTACAAACAAAACGTCGA
TAGCTTTTGCAACCAGATGCAGAACAACCAGCCGCGTAATCAATATGGAT
TGGTTTTCATCCAACAATGGGGATCAAATCGTCATGCAGCAAATGTCGCT
TTCATTTGCCTCGCTCATTCAAAAGCAACAGGTCAATTCAGCGCATTCGG
ACGCAATCAAATCAATAAACTCCTTGGAGacgaatcaatcaatcaacgcA
GTTTTGTCGTCGGTTATGGCTTAAACCCGCCCAATCAACCTCATCATAGA
TCCTCTTCATGCCCGAACCGCCCAGCACCATGTGGATGGAACGAGTTCAA
TATCAAGGCCCCAAATCCACATGTTCTCACTGGGGCGTTAGTGGGCGGTG
CTCGATCAACAACTGATGTATATCAAGATAGAAGGGATGATTTTATCGAA
AATGAAATCACCCTTGATTATAATGCCGGCTTTCAATCTGCCCTTGCCGC
CCTTCTTGAGCTTCAAAAAGAAGGCGACTGCGgtcaaaaattaacatttt
gaCCTGAAGCTACAACCGAAGCTCCCGAAGTTACCACCGAAGTTTCTGAA
GTTACCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCCGAAGTTACCAC
CGAAGCTCCTGAAGCTACAACCGATGCTCCTGAAGCTACAACCGAAGCTC
CCGAAGTTACCACCGAAGCTCCCGAAGTTACCACCGAAGCTCCCGAAGTT
ACCACCGAAGCTCCTGAAGTTACCACCGAAGCTCCTGCAGTTACCACCGA
AGCTCCTGAAGTTACCACTGAAGCTCCAGAAGTCACCACAGAAGCTCCTG
AAGTTACCACCAAAGCTCCCGAAGTTACCACCGAAGCTCCTGAAGTGAGT
ACCACAGGATCGGAAGAAACCACTCAAGCACAAACAACTGAAGCTGAGAC
ATGCAGTACACCCCATGACTACAGTGACCTACTCGGAAAATCGATGCTTT
TCTATAAAGCGCAACGATCAGGAATACTTCCTGACAACGATATCCCCTGG
AGACGCAACTCTTTCGAAAATGACGGTCAAGGACAAGGTCATGATCTATC
TGGTGGTTACTTTGACGCTGGAGATTATGTCAAATTCAACTTCCCAATGG
CTGCAGCAACAACAGTGTTAGCTTGGGGTATGGTTGATTTTGCTGATGGA
TATAAGTTTGCTGGTAAATATGATGATGGATTGGCAACATTGAAATGGGC
AACTGATTATTTCATTAAATGCCACACTGCAACAAATGAATTATATGGCC
AATGTGGTATCGGTAAAGATGACCATGAAGTCTGGGGGCGAGAAGATGAA
TATTACACAAACTCTGGTAAAGCTAACCCAAGACCATGCTACAAAGTCGA
TGCAAATAATCCAGGTTCTGATCTAGCCGGTGAAACATCAGCTGCTCTGG
CTGCTTCTTCCATTGCTTTTAAAGATTCGAACCCAGGTTATGCTACTACG
CTTTTACAACATGCTAAAGAGTTGTACACATTTGCTAAAACCTTCAAAGG
AGTTTATTCATCGAGTATCACAGATGCTCAATTCTTCTACAACTCCTTCA
GTGGTTACAACGATGAATTAGCATGGAGTGCTGCTTGGCTATACAAAGCT
ACCGACGAGGAAAAATATAGAACCGACGCTGAAGGGTTCTTCAATGAAAT
GCAACAAAACCCAGGTGAATTCTCCTGGGACAACAAAGGTCGTGGTGTAG
CAGCTCTCTTATCACAGCTCACTGGGAAAGCAGTTTACAAACAAAACGTC
GATAGCTTTTGCAACCAGATGCAGAACAACCAGCCGCGTAATCAATATGG
ATTGGTTTTCATCCAACAATGGGGATCAAATCGTCATGCAGCAAATGTCG
CTTTCATTTGCCTCGCTCATTCAAAAGCAACAGGTCAATTCAGCGCATTC
GGACGCAATCAAATCAATAAACTCCTTGGAGacgaatcaatcaatcaacg
cAGTTTTGTCGTCGGTTATGGCTTAAACCCGCCCAATCAACCTCATCATA
GATCCTCTTCATGCCCGAACCGCCCAGCACCATGTGGATGGAACGAGTTC
AATATCAAGGCCCCAAATCCACATGTTCTCACTGGGGCGTTAGTGGGCGG
TGCTCGATCAACAACTGATGTATATCAAGATAGAAGGGATGATTTTATCG
AAAATGAAATCACCCTTGATTATAATGCCGGCTTTCAATCTGCCCTTGCC
GCCCTTCTTGAGCTTCAAAAAGAAGGCGACTGCGgtcaaaaattaacatt
ttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056870-exon-scaffold_284-1491911889:714920..715647 | TCONS_00056870-exon-scaffold_284-1491911889:714920..715647 | Clytia hemisphaerica | exon |
| TCONS_00056870-exon-scaffold_284-1510915933:714920..715647 | TCONS_00056870-exon-scaffold_284-1510915933:714920..715647 | Clytia hemisphaerica | exon |
| TCONS_00056870-exon-scaffold_284-1575043694:714920..715647 | TCONS_00056870-exon-scaffold_284-1575043694:714920..715647 | Clytia hemisphaerica | exon |
| TCONS_00056870-exon-scaffold_284-1491911889:716066..717158 | TCONS_00056870-exon-scaffold_284-1491911889:716066..717158 | Clytia hemisphaerica | exon |
| TCONS_00056870-exon-scaffold_284-1510915933:716066..717158 | TCONS_00056870-exon-scaffold_284-1510915933:716066..717158 | Clytia hemisphaerica | exon |
| TCONS_00056870-exon-scaffold_284-1575043694:716066..717158 | TCONS_00056870-exon-scaffold_284-1575043694:716066..717158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:714920..717158 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
The following BLAST results are available for this feature:
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