TCONS_00056944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056944
Unique NameTCONS_00056944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056944 ID=TCONS_00056944|Name=TCONS_00056944|organism=Clytia hemisphaerica|type=transcript|length=1994bp
TTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATCATTTT
CTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAA
ACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCAATTAT
GTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTttaccaac
aacaacaaccaatgATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCA
CGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGCAAAATCTTTGT
CGGAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTG
GAAAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACATACA
AATGAGCCAAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGT
TTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGGAA
AAATGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCAAAAT
AAACCCTTGtatgACCCAGATAAGGCCAACACAACTCTTACTACTGCCAA
TGGTGCTGCACAACTTAACTTTCAATACAAAGGTCCAATGAAGTGCTCAC
CAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTGGTACAACAGAGGAT
GatgtaaagaaatattttgaacaatttgGAAAGGTCCTTGCTGTCGATAT
GCCTGTTCATCATGTGTATAAATGTCCCAAAGGCTTTGCATTTGTTGGAT
TTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATATCATCAG
ATAAATGGAAAAACGGTCGAAGTAAAAGGCTCAGATGAGCAGCAAGCACA
TTTGAACAAAAAGAAGGCTGAAGGTATGACTATCCGGTATGCTTCTGCTG
GAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAGGATAC
GGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCTCAACA
TAGTGTACAATATACAGtTCCTGCTGCAGCAACTGGTGGATATGTGTATG
ATCCCGCATCTAATACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGT
GGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGC
CTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTT
CTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGA
CTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCGTATCCAAGCGAAAC
ATCAACCTTTGGGCCAACTCGACATAACGTGATCGGAGCCAGTGCGCAAC
AACCGATGGCAGGAAACACAGTCGCCGATCCTCACGTCGTCTATTCTACA
GCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTA
CCACCCTTATGGAAGATAAGATATTGAacttcaaaactgaaaaaagagaC
TTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCG
ATCTTCACTCATGGACAGcgattttgtaaataaaaacttttttaatctat
tgattgattgatgctTTGTCAGTTGGTTCTTCGATACGTGATAATCATAT
TGCTCTTTGGTGACAATTCGGTTTTataaatgaaaagacattttattGGA
TTTGTCTACGCCATGCACAATGGATGTAGATATTTTACGCGATAATTTCA
TTTGAATGAACAATTTTTAACGTGAGAACTTTATGGACATGCGCGatatt
tctctctttttatttgaaagaaaatttattcaatggaattacaaaatatt
ttgattgtttatccatttcttatttttttatcgGAATTTTCTTTACTTAC
TATTGAGTCCACTTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888723-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056944 ID=TCONS_00056944|Name=TCONS_00056944|organism=Clytia hemisphaerica|type=transcript|length=8879bp|location=Sequence derived from alignment at scaffold_284:879845..888723- (Clytia hemisphaerica)
TTTTTAGTGGGATTCATATATACAATACTTGGAGGCCACGGTATCATTTT
CTTATTGTTTTAGTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAA
ACCATGGCTGCTCCTATACAACAAATTTCAAATGGCGCTATACCAATTAT
GTCTGGTGTTGCAGGAACTCCAGTTCAACAGCCAGCTGTTGTTTACCAAC
AACAACAACCAATGATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCA
CGAAAGCCCTACATCAGGAATCCGAATGAGGAGCATTGGTAANTTACGCA
CCACGAAAGCCCTACATCAGGAATCCGAATGAGGAACATTGGTAAGGGAG
CTTTTGAAAAATTGACTTTTTAATTTATCCATTATACAGTTATACTTGAA
AAAAAGAGCTCTGGGAAAATAACCATTGTGTCTTCAAAAGACCAACTGTA
TTAGTTCCATAGGGAAAAATTCATGGTTGTTGGACTTGCAAATACGTGTG
TCAGTGTACCAATCAAAGGAAATTCGTTTTTACCAATGTTACTTTTTTCT
ATATCTAAAGAATTAGTAAACGTTTTAAAATCTGTAAAAAGCTCTCTACT
CCCAAATAGTTCTAGATTACCAGACAATCTCAATCAAACAGAATCGACGA
TCGAACCAGTCGAATGCAATCGAATCTCAATCGAGCGTCAAAATTCTGGG
TAATATTCGATAGGTTCGATTGTTGTTCAACTGGTTCGATTGTCGTTCAA
CTACATTCGATTGTTTGAGTGAAACAAGGCATGTCCTAAATATATTTTGC
GTGATGCGCACCGCTTCCCGTTATTCCTCCTTAACTCTCATATATAGCTC
AAAAGAATCGAATCAACAAGAGGATTTCGAAAAGGGTCAGCTTTTTAACA
AAGATTAGTCTCTCTAAGGGTCAGGTCCTAATCAAACGCAATCGAACATC
AATCGAACGCAATCGAATATCAATTGAATCTGAAAATTGTGAGATTCAAT
CGCGTTCGACAATCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTTCG
ACTGGTTCGATCGTCGATTCCATTTGATTGAGATCGTCTGGAGATGAAAC
CCTGCAAAAACCATGTTCAATCTTATCGTTTCGTTGGTATTGGAAACCAA
GGAAATTCGCAAAAAATTTATTTCTCCCTTTTTTAGCAAAATCTTTGTCG
GAGGTGTTGGTAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTGGA
AAATTCGGAGAAATTGCAGATAGTGTTATAATGAAAGATAAACATACAAA
TGAGCCAAGGTAAGTGTCAGCATAAACATATAAACAACTGGACATCCATC
TCCTTTCTTGTATTTTTGAAGATAACACTGCTAGCTTCGTTGCCGCCTCA
TTAAAATCATAAAACCTAACAATAAATTTTGGTATACCTCTTGGGAATAC
CTTGGTAAAACCTCAAAACTTCAACAAAAGTCTCTGTTGTTCTACTCTTC
TCAAGTCTTATCTATATCATAACCAAGATAACTGAGGCAAAATCATTGTC
AGCTTGTCAAAATTCTGACTAATATTTTTAAATTTAGACTCAAAAGTATG
GAATAATTTTAGAGAGTATGGGATTCAAATTATGATAATCTCATGGTACA
GGCTCTCAACTTTGGCGTACTATTTTTTTCATGTCATAAAAAAATTATTA
GAGTGACAAAAGGGATGCAAAAGTATACACGCAGTTGATAAAATACTTAT
GCAATGTCAAGCTCTATCAATCCTTTTACCTTAGTAATTCCAATAAAATG
AAATTGTGACGGAATATTGTAGAATTTTATATATCAATCAGGGCTGCAAA
TAAGCATCGGTCATCGGTCAATGTCCGACTGAAAAAGCCATTTGACCGAC
TGAAAATCATTTGTGTCGGTCATGATGTCCGAATGAAAAAAAAACATTAA
TTTGAGTTGAAAACAAATCTTTCACACCCCTGTCTCTTTGTCTATTATTA
CTACTCTTTTACTTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTTTACTT
TGATTTCATGCGTTTTTATTTTTATCGACTTGCTTTCTTTGTAACTTTCA
TCAGTGTTTCTAAGTTCACTTTTTATTGACTTGCTATCTTTGTAAACTTT
CAAGAGTGTTTATAAGTTCACTTTTTATCAACTTGCTTTCTTCGTAACTT
TCAAGAGTGTCTCTAAGCTCACTTTTATCAACTCGTTATCGTTGTAACTT
TCAAGGGTCTTTCTAAGTTCACTTATATCGCATTGCTTTCTTCGTAACTT
TAGAAGTTCCAAGGTCACTTTTACCTACTCTCTTTCTCCATAACTTTCAA
GACTGTATGATTTCAGAAAACTTATAGACTGAATGACCGACAGGATTTAG
AGCTTGACCGACAGAATTTCATCTCAGTCCCGACATGATGTCTGATTGAC
TAGAAATATTTATTTGCAGCCCCGATCAATTTTTTAATACAGTGGGTAAC
AAAGCTCGCTTCAAAGACACAATGGAAGATAGTCGTCCAGTCGTTTATAT
GTTCAGACAAAAAATTTGAGCCTTGCTAACAGTATCTTATGAAAAACTTT
GTTTTAAAAAACGTTTTAAATTAAAAAAGCAATGGTGAAATGCTGAGTCA
GCAGAAAAGTAAATTGCTGTTTTTGGAAGGAACTTATGCATTGAGCAATG
ATCATCTAAAAAAATTACTTTCCAAAACTCCAAAAAAGAGCAATAATTGC
TGTTTTTATCTCATATACCCCACTGTATATTTTCAGACTGAAGAGAAAAA
CCCTTTTCTTTTGTTATTTCATGATATCTTTTACCTGTTCATTAATTTCA
CAGAGGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGCTG
TCATTGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAATGGTA
GGTTGTAATGTCTGAAAGAAACTCTACATTATATAATGACAAGAAAAAAA
TGACGTTTCTATAAGAGAATCATTCTGTGTTTTTTATACATTTTGGCACA
CCTGCAATATTGCCAATATATTGAAGTAGTTTTGGTTTCATTTTTAAAAC
TTAATTTGGTTGCTTCATACAGAGAAGTAGGATGAAATAGAAAACCAGCT
TCCTTGACTACCCCATGCCTTTGTTTTAGCTTTATTAATAAGGTTAGTTT
GATTAGGAAAAGTTGAAGAAAAGATGGCTTGTCCTAAAAATGGCTGGCCA
TAAAAGTGGATTTGCGTTTTACATTTGTGCACCTACCTGCTTTTCAATAA
GATGTGCGCAATCCCGTGTGAAGTAGCAAATTTTACACCATTTTATTGCC
TAAAAATTCTCGTTGTAATGATATTGATTTGTTTCAATAATATTTGGTCC
AGTTTCGGGGAAAGCAATCATTAGAATTGTTAATGTTAGGATATTGTGAG
CAAGAAAATAGGTATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATATAAG
CCCCTAAAGTTTAAGCCTAATTAGACTCAAACAAAAGACTTCCACCACAT
CACCTCCCTTAAGGGCAAAGGACCTGGTACATGACGAGCCGTGTCTTCAA
GAAGCTGTTTTTCTATCTCATTGCACTTCTCTGCTTCATATCTTTGATAT
CTGGGTTGAAAGAAAAATTATAAAAAATTATATTTTGTTTGTATTGAGCC
TTTCACTGACACTGCTGAGATGGATTGAAAATATGTTATTTTGAGTTTGG
AACAGGTTGGAAACATTTGTTTGAGGCTAGGAAGGTCTGGAAGATAAAAG
AGTTCTTTTTTCTTTCCTTTACATAGTTTATTGAAGTACGAAAGTTCCAG
AGAAAATCTGAGGTGAGATCAAGTTTCTGACTTCATTATTGTTGTTATTC
TTTGAAGGTTGATCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCAAA
ATAAACCCTTGGTAAGTTTTTTAAGTCAGTCGATCTCTGGATCTTTGATA
TTAATGCCCTATCTACTTGATTTTTACTGAATGACACAAGATGAGTCTTA
GACTTTTGTTTATTTATTTTTTGTCTCATTACAGTTTTTGAATATTTTTC
ATTTTCAGTATGACCCAGATAAGGCCAACACAACTCTTACTACTGCCAAT
GGTGCTGCACAACTTAACGTAAGAATTAAAAATCTTGGTATCAATATTGT
TACATTTTGCATGCAAGTCAGTTTCAAATTATGTCTAAATCAGCAATGCC
CTCAATTGAAGTTGATAAATGCTTTGCTATGACCACTGGTGTTTGATCAA
TAATTTAAATCAAAACTTTTCTTTCTTGAACAGTTTCAATACAAAGGTCC
AATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTG
GTACAACAGAGGATGATGTAAAGAAATATTTTGAACAATTTGGAAAGGTA
ATTTGAACTTTTTTCTCTTCAAATACTCCTTCAAAATTAAAAAAACAAGG
AATGTTTTGAAAATAAGACATTTAAAAATCTTAATTTCTTATCCTTCAGG
TCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGT
ATGTTTATTATTCAGAATTTCGGACTTTATGCCCCTCAAATATCCAAGTT
TACGAAAATCACCATATTTTTTGATCCACACAAAAACAATTAACAATGCA
AAAAAGTTTAACCCACGCAAATAAATTTTTGAACTTCGCAAAAAAAAATT
TGACCGTCCATAAAAAAATTCTACCCACATGTCCATTCAACCCAAGCACC
CACTCAACCCACACCCGTCAAATCCATACCAGGGTAGAATAACTGATTTT
AGAGAGGGCTAACTAACTGTGATTTAAAACTTAATCATTTTCCTTTCCAA
CAATTTGTTGACTAGGCTATAAAAAAAAAAAAATTCTATCAATTCATTTT
CTGCTACATCTGGTTGTAATCATACTTACAAATTCCTTAAAATTTTGTTT
TGGTATATATGTTTTTGATAAGGGATATGGTTATGAAGTATAAGCTTTTC
TTGGACGGGTAACTGACCTCAACTTGTCCGTGCACAAGATTACTATCATC
CCTATTACTATTTTCAGCTTTCTATCTGCTTGAGCCAATTTTATTTTATA
TTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATTTAACTCT
AGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAAATATTTA
CAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTAAC
CAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAACATTTGA
CATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACATCATTTT
ATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGTCCCATAT
GCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTTCTTTTTA
GCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCATTTGTTGG
ATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGATATCATC
AGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTGTTTTACC
AATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTAAAAAGTT
TCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTAGTTCAGC
TCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAGAC
TTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTATTTTTGT
TTTTCTGAAAAGCTAATTTTTGCTTATTTTTTAGATTTTAAAATTTGCCT
TTTTTCAGTCAGTNTTATATTGATTTATAATTAGTAGAAACCTAGTTGCA
CACCTTTGCATTTAACTCTAGACAAAATATATTGACAGAACTCATATATT
TTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCACAGCACAACTT
AGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGATCAGAATATTAA
CATTTTGAATAACATTTGACATTACTAGAATTTTTGACCTTCAAAATCTA
AAAATATATACATCATTTTATGATTTTATACTTAAAAGTATTTTAACTAA
GAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTGAATGTATGAAT
TTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTATGATTACCTAAT
TAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTA
ACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTGTGATATAAAAT
ATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATTTATAA
TCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGACACTG
TAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTCTG
TTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTGCAATC
ATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTTC
TAGATTTTAAAATTTGCCTTTTTTCAGTCAGTCATTATTCAGTATTACTG
TTCTAAACTGAATTTTGAGATTGGTTTATTTTGTTGTAGGTCGAAGTAAA
AGGCTCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGGTA
TGAGTGAGTACCAGAACTTTCTTATTATTTTAATGATTACCTTTCGAATG
CTCAAATACTGATTCTCGTCTACGGGAAGGGTTTTTTTCAAATGACCTTC
TTGATTTATTTGCGAATTAAATACCTTAAGGAAAGAAATTTTTGTGGAAC
AAGTTTTTGACAAATCCGCGAAATAAGAATATTATCATGATTTAGACAGG
TTTAGAAAATAACCTATAGTATTAGTGTTTTTGGGGCAGAATAAGCCATA
TTTAAACAAAAATTTGTCTCAACCGCAAAATTAAATTCTGTGAAACTTCT
GAATTTTGAGCTGTGAACTGCGAAATTAAATTCCACAAAAATTTTTTTCC
GCAGAGATTTCTTCCCTTAAGGTAACAACAAACAAGGAATTGAAATGAAT
TTATCTTAAATATTTTGCTTTTTTTTCAGCTATCCGGTATGCTTCTGCTG
GAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAACAGTGACAGGATAC
GGTGCATATGCAAACCTTGGTCAACCATTAATCGTAAACCCTGCTCAACA
TAGTGTACAATATACAGGTAAGAAGTTAGTTAGCAAAACATATTTGCTAT
AAGCCTTAAATATCAACACTGATCACACCTTGGTAAAAGGATTAATGAAT
TATAGACAAAAGTATGTTAATTAGGGTTTAAACTGGTGTAAATAATGTTT
TTTTTTTTTTTCAACCTGATAAAAAAAGAAATAAAATAATTGATTCGACA
AATCCTTTTGAACCTTCAGTTGCTTTTTCATTACTATTTTGTTTTTTTCT
CAGTTCCTGCTGCAGCAACTGGTGGATATGTGTATGATCCCGCATCTAAT
ACGTATTATCAACTCCCTGGAACTGTCGTCGCTGGTAAGACTATCACTCA
AATTTACCAGATGAATGCACGTCAAAATATTTCAAAACCTTATTTTATAA
AAAATTACTCAATAGTAGGTTTTAAAATAGATCACTCTTTGGTATCTGGT
CAAAAATATAAGCTCGATAAAATCGCGAAATTTAATCCCCGTTAAAGTTT
ATCCCATTAAAGTAGTAACAAAATATTTCTGTAATTAACAGGTGGTGCAG
TTGCAGGTGCAGTGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCCCA
TACGCTGGTGCAACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCACA
AGTTGGTCAGCGAACGTTACAAGCAACTGATATGATCCAAGGACTAGCAG
CAGGCTCAACAGTTGGTAAGTGAGTAATCTACGTAAGTCATCTCTTGAGA
ATAACTTTTAAAAGTTTGAGTGTCCAAAAGTTCTAAGTAAACATCATAGA
TCAATAACAGTACTTTGTATGTATATGATATTATCAATCATATTATCATA
TTTTTAGCCTTGGGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGGCC
AACTCGACATAACGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGGAA
ACACAGTCGCCGATCCTCACGTCGTCTATTCTACAGCAACATCTATTTCT
GCTGGCGATGCTGCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGAAG
ATAAGATATTGAACTTCAAAACTGAAAAAAGAGACTTCAATCGTACTTTG
ATCTGTACGTAAAGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATGGA
CAGCGATTTTGTAAATAAAAACTTTTTTAATCTATTGATTGATTGATGCT
TTGTCAGTTGGTTCTTCGATACGTGATAATCATATTGCTCTTTGGTGACA
ATTCGGTTTTATAAATGAAAAGACATTTTATTGGATTTGTCTACGCCATG
CACAATGGATGTAGATATTTTACGCGATAATTTCATTTGAATGAACAATT
TTTAACGTGAGAACTTTATGGACATGCGCGATATTTCTCTCTTTTTATTT
GAAAGAAAATTTATTCAATGGAATTACAAAATATTTTGATTGTTTATCCA
TTTCTTATTTTTTTATCGGAATTTTCTTTACTTACTATTGAGTCCACTTC
CACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056944-exon-scaffold_284-1575043694:888436..888723TCONS_00056944-exon-scaffold_284-1575043694:888436..888723Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:887415..887537TCONS_00056944-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:885777..885870TCONS_00056944-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:884763..884816TCONS_00056944-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:884556..884615TCONS_00056944-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:884277..884390TCONS_00056944-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:884126..884174TCONS_00056944-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:883107..883189TCONS_00056944-exon-scaffold_284-1575043694:883107..883189Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:881921..881984TCONS_00056944-exon-scaffold_284-1575043694:881921..881984Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:881357..881494TCONS_00056944-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:881040..881120TCONS_00056944-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:880659..880832TCONS_00056944-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1575043694:879845..880516TCONS_00056944-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:888436..888723TCONS_00056944-exon-scaffold_284-1510915933:888436..888723Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:887415..887537TCONS_00056944-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:885777..885870TCONS_00056944-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:884763..884816TCONS_00056944-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:884556..884615TCONS_00056944-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:884277..884390TCONS_00056944-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:884126..884174TCONS_00056944-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:883107..883189TCONS_00056944-exon-scaffold_284-1510915933:883107..883189Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:881921..881984TCONS_00056944-exon-scaffold_284-1510915933:881921..881984Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:881357..881494TCONS_00056944-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:881040..881120TCONS_00056944-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:880659..880832TCONS_00056944-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1510915933:879845..880516TCONS_00056944-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:888436..888723TCONS_00056944-exon-scaffold_284-1491911889:888436..888723Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:887415..887537TCONS_00056944-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:885777..885870TCONS_00056944-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:884763..884816TCONS_00056944-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:884556..884615TCONS_00056944-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:884277..884390TCONS_00056944-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:884126..884174TCONS_00056944-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:883107..883189TCONS_00056944-exon-scaffold_284-1491911889:883107..883189Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:881921..881984TCONS_00056944-exon-scaffold_284-1491911889:881921..881984Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:881357..881494TCONS_00056944-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:881040..881120TCONS_00056944-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:880659..880832TCONS_00056944-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056944-exon-scaffold_284-1491911889:879845..880516TCONS_00056944-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888723 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211839	0.00448619	0.00115721	7.42935e-05	10.7187	38.9763	0.115622	0.00830423	29.2745	15.3598	10.7538	2.84203	3.18572	13.4011	6.53051	14.067	20.8744	16.7568	1.73167	0.0153485	0.0765106	3.55489	0.139582	0.906753	0.0601608	0.000413302	2.86184	10.8579	0.0126934	1.84786
Blast
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BLAST of TCONS_00056944 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.408e-34
Identity = 78/233 (33.48%), Postives = 113/233 (48.50%), Query Frame = 2 
Query:  254 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQAHLNKKKAEGMT 931
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++       A G +
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200
The following BLAST results are available for this feature:
BLAST of TCONS_00056944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H9.408e-3433.48RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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