TCONS_00056946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056946
Unique NameTCONS_00056946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056946 ID=TCONS_00056946|Name=TCONS_00056946|organism=Clytia hemisphaerica|type=transcript|length=2008bp
TTTTGTTTTAGGAGATTTCATTTTTAGTGGGATTCATATATACAATACTT
GGAGGCCACGGTATCATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAA
ATATTCTCATAAACTAAAAAACCATGGCTGCTCCTATACAACAAATTTCA
AATGGCGCTATACCAATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACA
GCCAGCTGTTGTttaccaacaacaacaaccaatgATTGTCGCAGGTGCTG
CTCCGATGGGTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAG
GAACATTGCAAAATCTTTGTCGGAGGTGTTGGTAAATTGACAAATGATGA
ATCTCTTAGAGCCTACTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTA
TAATGAAAGATAAACATACAAATGAGCCAAGAGGGTTTGCATTCGTCACA
TTCAAAACACCAGAAGCTGTTTCAGCTGTCATTGAACAAAATAATAAAGG
TGGACATACTCTTGATGGAAAAATGGTTGATCCTAAGCCAGCTGTCCCTC
AAGGTCCTGGAGTTCAAAATAAACCCTTGtatgACCCAGATAAGGCCAAC
ACAACTCTTACTACTGCCAATGGTGCTGCACAACTTAACTTTCAATACAA
AGGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTG
GTATTGGTACAACAGAGGATGatgtaaagaaatattttgaacaatttgGA
AAGGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAA
AGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAA
CAAAAGATCGATATCATCAGATAAATGGAAAAACGGTCGAAGTAAAAGGC
TCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGCTATCCG
GTATGCTTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAA
CAGTGACAGGATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTA
AACCCTGCTCAACATAGTGTACAATATACAGtTCCTGCTGCAGCAACTGG
TGGATATGTGTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAA
CTGTCGTCGCTGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACC
TCAGTCGCAGCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCA
ACAAGTCTTAACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTG
ATATGATCCAAGGACTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCG
TATCCAAGCGAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGG
AGCCAGTGCGCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACG
TCGTCTATTCTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCA
GCGGCTCGTGGTTACCACCCTTATGGAAGATAAGATATTGAacttcaaaa
ctgaaaaaagagaCTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAG
CTTTGAAAGACTCGATCTTCACTCATGGACAGcgattttgtaaataaaaa
cttttttaatctattgattgattgatgctTTGTCAGTTGGTTCTTCGATA
CGTGATAATCATATTGCTCTTTGGTGACAATTCGGTTTTataaatgaaaa
gacattttattGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTT
ACGCGATAATTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGG
ACATGCGCGatatttctctctttttatttgaaagaaaatttattcaatgg
aattacaaaatattttgattgtttatccatttcttatttttttatcgGAA
TTTTCTTTACTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGAT
GTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056946 ID=TCONS_00056946|Name=TCONS_00056946|organism=Clytia hemisphaerica|type=transcript|length=8899bp|location=Sequence derived from alignment at scaffold_284:879845..888743- (Clytia hemisphaerica)
TTTTGTTTTAGGAGATTTCATTTTTAGTGGGATTCATATATACAATACTT
GGAGGCCACGGTATCATTTTCTTATTGTTTTAGTGGGTAAAAGACGATAA
ATATTCTCATAAACTAAAAAACCATGGCTGCTCCTATACAACAAATTTCA
AATGGCGCTATACCAATTATGTCTGGTGTTGCAGGAACTCCAGTTCAACA
GCCAGCTGTTGTTTACCAACAACAACAACCAATGATTGTCGCAGGTGCTG
CTCCGATGGGTTACGCACCACGAAAGCCCTACATCAGGAATCCGAATGAG
GAGCATTGGTAANTTACGCACCACGAAAGCCCTACATCAGGAATCCGAAT
GAGGAACATTGGTAAGGGAGCTTTTGAAAAATTGACTTTTTAATTTATCC
ATTATACAGTTATACTTGAAAAAAAGAGCTCTGGGAAAATAACCATTGTG
TCTTCAAAAGACCAACTGTATTAGTTCCATAGGGAAAAATTCATGGTTGT
TGGACTTGCAAATACGTGTGTCAGTGTACCAATCAAAGGAAATTCGTTTT
TACCAATGTTACTTTTTTCTATATCTAAAGAATTAGTAAACGTTTTAAAA
TCTGTAAAAAGCTCTCTACTCCCAAATAGTTCTAGATTACCAGACAATCT
CAATCAAACAGAATCGACGATCGAACCAGTCGAATGCAATCGAATCTCAA
TCGAGCGTCAAAATTCTGGGTAATATTCGATAGGTTCGATTGTTGTTCAA
CTGGTTCGATTGTCGTTCAACTACATTCGATTGTTTGAGTGAAACAAGGC
ATGTCCTAAATATATTTTGCGTGATGCGCACCGCTTCCCGTTATTCCTCC
TTAACTCTCATATATAGCTCAAAAGAATCGAATCAACAAGAGGATTTCGA
AAAGGGTCAGCTTTTTAACAAAGATTAGTCTCTCTAAGGGTCAGGTCCTA
ATCAAACGCAATCGAACATCAATCGAACGCAATCGAATATCAATTGAATC
TGAAAATTGTGAGATTCAATCGCGTTCGACAATCGAATTTCAATCGGTCG
ATTGCGTTCGATTTGGTTCGACTGGTTCGATCGTCGATTCCATTTGATTG
AGATCGTCTGGAGATGAAACCCTGCAAAAACCATGTTCAATCTTATCGTT
TCGTTGGTATTGGAAACCAAGGAAATTCGCAAAAAATTTATTTCTCCCTT
TTTTAGCAAAATCTTTGTCGGAGGTGTTGGTAAATTGACAAATGATGAAT
CTCTTAGAGCCTACTTTGGAAAATTCGGAGAAATTGCAGATAGTGTTATA
ATGAAAGATAAACATACAAATGAGCCAAGGTAAGTGTCAGCATAAACATA
TAAACAACTGGACATCCATCTCCTTTCTTGTATTTTTGAAGATAACACTG
CTAGCTTCGTTGCCGCCTCATTAAAATCATAAAACCTAACAATAAATTTT
GGTATACCTCTTGGGAATACCTTGGTAAAACCTCAAAACTTCAACAAAAG
TCTCTGTTGTTCTACTCTTCTCAAGTCTTATCTATATCATAACCAAGATA
ACTGAGGCAAAATCATTGTCAGCTTGTCAAAATTCTGACTAATATTTTTA
AATTTAGACTCAAAAGTATGGAATAATTTTAGAGAGTATGGGATTCAAAT
TATGATAATCTCATGGTACAGGCTCTCAACTTTGGCGTACTATTTTTTTC
ATGTCATAAAAAAATTATTAGAGTGACAAAAGGGATGCAAAAGTATACAC
GCAGTTGATAAAATACTTATGCAATGTCAAGCTCTATCAATCCTTTTACC
TTAGTAATTCCAATAAAATGAAATTGTGACGGAATATTGTAGAATTTTAT
ATATCAATCAGGGCTGCAAATAAGCATCGGTCATCGGTCAATGTCCGACT
GAAAAAGCCATTTGACCGACTGAAAATCATTTGTGTCGGTCATGATGTCC
GAATGAAAAAAAAACATTAATTTGAGTTGAAAACAAATCTTTCACACCCC
TGTCTCTTTGTCTATTATTACTACTCTTTTACTTTCTTTTAGCTTTCAAG
AGTGTTTCTAAAGTTTACTTTGATTTCATGCGTTTTTATTTTTATCGACT
TGCTTTCTTTGTAACTTTCATCAGTGTTTCTAAGTTCACTTTTTATTGAC
TTGCTATCTTTGTAAACTTTCAAGAGTGTTTATAAGTTCACTTTTTATCA
ACTTGCTTTCTTCGTAACTTTCAAGAGTGTCTCTAAGCTCACTTTTATCA
ACTCGTTATCGTTGTAACTTTCAAGGGTCTTTCTAAGTTCACTTATATCG
CATTGCTTTCTTCGTAACTTTAGAAGTTCCAAGGTCACTTTTACCTACTC
TCTTTCTCCATAACTTTCAAGACTGTATGATTTCAGAAAACTTATAGACT
GAATGACCGACAGGATTTAGAGCTTGACCGACAGAATTTCATCTCAGTCC
CGACATGATGTCTGATTGACTAGAAATATTTATTTGCAGCCCCGATCAAT
TTTTTAATACAGTGGGTAACAAAGCTCGCTTCAAAGACACAATGGAAGAT
AGTCGTCCAGTCGTTTATATGTTCAGACAAAAAATTTGAGCCTTGCTAAC
AGTATCTTATGAAAAACTTTGTTTTAAAAAACGTTTTAAATTAAAAAAGC
AATGGTGAAATGCTGAGTCAGCAGAAAAGTAAATTGCTGTTTTTGGAAGG
AACTTATGCATTGAGCAATGATCATCTAAAAAAATTACTTTCCAAAACTC
CAAAAAAGAGCAATAATTGCTGTTTTTATCTCATATACCCCACTGTATAT
TTTCAGACTGAAGAGAAAAACCCTTTTCTTTTGTTATTTCATGATATCTT
TTACCTGTTCATTAATTTCACAGAGGGTTTGCATTCGTCACATTCAAAAC
ACCAGAAGCTGTTTCAGCTGTCATTGAACAAAATAATAAAGGTGGACATA
CTCTTGATGGAAAAATGGTAGGTTGTAATGTCTGAAAGAAACTCTACATT
ATATAATGACAAGAAAAAAATGACGTTTCTATAAGAGAATCATTCTGTGT
TTTTTATACATTTTGGCACACCTGCAATATTGCCAATATATTGAAGTAGT
TTTGGTTTCATTTTTAAAACTTAATTTGGTTGCTTCATACAGAGAAGTAG
GATGAAATAGAAAACCAGCTTCCTTGACTACCCCATGCCTTTGTTTTAGC
TTTATTAATAAGGTTAGTTTGATTAGGAAAAGTTGAAGAAAAGATGGCTT
GTCCTAAAAATGGCTGGCCATAAAAGTGGATTTGCGTTTTACATTTGTGC
ACCTACCTGCTTTTCAATAAGATGTGCGCAATCCCGTGTGAAGTAGCAAA
TTTTACACCATTTTATTGCCTAAAAATTCTCGTTGTAATGATATTGATTT
GTTTCAATAATATTTGGTCCAGTTTCGGGGAAAGCAATCATTAGAATTGT
TAATGTTAGGATATTGTGAGCAAGAAAATAGGTATCTTGTGGTCTGAGTG
AGGTGTTCCCAAAATATAAGCCCCTAAAGTTTAAGCCTAATTAGACTCAA
ACAAAAGACTTCCACCACATCACCTCCCTTAAGGGCAAAGGACCTGGTAC
ATGACGAGCCGTGTCTTCAAGAAGCTGTTTTTCTATCTCATTGCACTTCT
CTGCTTCATATCTTTGATATCTGGGTTGAAAGAAAAATTATAAAAAATTA
TATTTTGTTTGTATTGAGCCTTTCACTGACACTGCTGAGATGGATTGAAA
ATATGTTATTTTGAGTTTGGAACAGGTTGGAAACATTTGTTTGAGGCTAG
GAAGGTCTGGAAGATAAAAGAGTTCTTTTTTCTTTCCTTTACATAGTTTA
TTGAAGTACGAAAGTTCCAGAGAAAATCTGAGGTGAGATCAAGTTTCTGA
CTTCATTATTGTTGTTATTCTTTGAAGGTTGATCCTAAGCCAGCTGTCCC
TCAAGGTCCTGGAGTTCAAAATAAACCCTTGGTAAGTTTTTTAAGTCAGT
CGATCTCTGGATCTTTGATATTAATGCCCTATCTACTTGATTTTTACTGA
ATGACACAAGATGAGTCTTAGACTTTTGTTTATTTATTTTTTGTCTCATT
ACAGTTTTTGAATATTTTTCATTTTCAGTATGACCCAGATAAGGCCAACA
CAACTCTTACTACTGCCAATGGTGCTGCACAACTTAACGTAAGAATTAAA
AATCTTGGTATCAATATTGTTACATTTTGCATGCAAGTCAGTTTCAAATT
ATGTCTAAATCAGCAATGCCCTCAATTGAAGTTGATAAATGCTTTGCTAT
GACCACTGGTGTTTGATCAATAATTTAAATCAAAACTTTTCTTTCTTGAA
CAGTTTCAATACAAAGGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTT
TGTTGGTGGAATTGGTATTGGTACAACAGAGGATGATGTAAAGAAATATT
TTGAACAATTTGGAAAGGTAATTTGAACTTTTTTCTCTTCAAATACTCCT
TCAAAATTAAAAAAACAAGGAATGTTTTGAAAATAAGACATTTAAAAATC
TTAATTTCTTATCCTTCAGGTCCTTGCTGTCGATATGCCTGTTCATCATG
TGTATAAATGTCCCAAAGGTATGTTTATTATTCAGAATTTCGGACTTTAT
GCCCCTCAAATATCCAAGTTTACGAAAATCACCATATTTTTTGATCCACA
CAAAAACAATTAACAATGCAAAAAAGTTTAACCCACGCAAATAAATTTTT
GAACTTCGCAAAAAAAAATTTGACCGTCCATAAAAAAATTCTACCCACAT
GTCCATTCAACCCAAGCACCCACTCAACCCACACCCGTCAAATCCATACC
AGGGTAGAATAACTGATTTTAGAGAGGGCTAACTAACTGTGATTTAAAAC
TTAATCATTTTCCTTTCCAACAATTTGTTGACTAGGCTATAAAAAAAAAA
AAATTCTATCAATTCATTTTCTGCTACATCTGGTTGTAATCATACTTACA
AATTCCTTAAAATTTTGTTTTGGTATATATGTTTTTGATAAGGGATATGG
TTATGAAGTATAAGCTTTTCTTGGACGGGTAACTGACCTCAACTTGTCCG
TGCACAAGATTACTATCATCCCTATTACTATTTTCAGCTTTCTATCTGCT
TGAGCCAATTTTATTTTATATTGATTTATAATTAGTAGAAACCTAGTTGC
ACACCTTTGCATTTAACTCTAGACAAAATATATTGACAGAACTCATATAT
TTTAGATGTTTAAATATTTACAATTAATGAAAAATAGCCACAGCACAACT
TAGCCTGTTTTTTAAGTAACCAAAATATTATATTTGAGATCAGAATATTA
ACATTTTGAATAACATTTGACATTACTAGAATTTTTGACCTTCAAAATCT
AAAAATATATACATCATTTTATGATTTTATACTTAAAAGTATTTTAACTA
AGAACTTAATAGTCCCATATGCCATTAATCAATGTTTTTGAATGTATGAA
TTTACTATGTCTTCTTTTTAGCAAAATATTTCTAATTTATGATTACCTAA
TTAGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGT
AACAAAAGATCGATATCATCAGATAAATGGAAAAACGGTGTGATATAAAA
TATTTTAATGTTGTTTTACCAATTATTTTTTCAATTCTTCGTAATTTATA
ATCAATATTTTTAAAAAGTTTCAGGTATTTTCACTATTTTGACTGACACT
GTAACTAATTTTAGTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTCT
GTTTGTTTCTAGCCTTAGACTTTAATATTGTTTGAATGTTATTTTGCAAT
CATTTGTTCAGTATTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTT
TTAGATTTTAAAATTTGCCTTTTTTCAGTCAGTNTTATATTGATTTATAA
TTAGTAGAAACCTAGTTGCACACCTTTGCATTTAACTCTAGACAAAATAT
ATTGACAGAACTCATATATTTTAGATGTTTAAATATTTACAATTAATGAA
AAATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTAACCAAAATATTAT
ATTTGAGATCAGAATATTAACATTTTGAATAACATTTGACATTACTAGAA
TTTTTGACCTTCAAAATCTAAAAATATATACATCATTTTATGATTTTATA
CTTAAAAGTATTTTAACTAAGAACTTAATAGTCCCATATGCCATTAATCA
ATGTTTTTGAATGTATGAATTTACTATGTCTTCTTTTTAGCAAAATATTT
CTAATTTATGATTACCTAATTAGGCTTTGCATTTGTTGGATTTGAGACAT
TTGATGTAGTTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGA
AAAACGGTGTGATATAAAATATTTTAATGTTGTTTTACCAATTATTTTTT
CAATTCTTCGTAATTTATAATCAATATTTTTAAAAAGTTTCAGGTATTTT
CACTATTTTGACTGACACTGTAACTAATTTTAGTTCAGCTCTTTTCAGAA
ATTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAGACTTTAATATTGT
TTGAATGTTATTTTGCAATCATTTGTTCAGTATTTTTGTTTTTCTGAAAA
GCTAATTTTTGCTTATTTTCTAGATTTTAAAATTTGCCTTTTTTCAGTCA
GTCATTATTCAGTATTACTGTTCTAAACTGAATTTTGAGATTGGTTTATT
TTGTTGTAGGTCGAAGTAAAAGGCTCAGATGAGCAGCAAGCACATTTGAA
CAAAAAGAAGGCTGAAGGTATGAGTGAGTACCAGAACTTTCTTATTATTT
TAATGATTACCTTTCGAATGCTCAAATACTGATTCTCGTCTACGGGAAGG
GTTTTTTTCAAATGACCTTCTTGATTTATTTGCGAATTAAATACCTTAAG
GAAAGAAATTTTTGTGGAACAAGTTTTTGACAAATCCGCGAAATAAGAAT
ATTATCATGATTTAGACAGGTTTAGAAAATAACCTATAGTATTAGTGTTT
TTGGGGCAGAATAAGCCATATTTAAACAAAAATTTGTCTCAACCGCAAAA
TTAAATTCTGTGAAACTTCTGAATTTTGAGCTGTGAACTGCGAAATTAAA
TTCCACAAAAATTTTTTTCCGCAGAGATTTCTTCCCTTAAGGTAACAACA
AACAAGGAATTGAAATGAATTTATCTTAAATATTTTGCTTTTTTTTCAGC
TATCCGGTATGCTTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATA
TTGGAACAGTGACAGGATACGGTGCATATGCAAACCTTGGTCAACCATTA
ATCGTAAACCCTGCTCAACATAGTGTACAATATACAGGTAAGAAGTTAGT
TAGCAAAACATATTTGCTATAAGCCTTAAATATCAACACTGATCACACCT
TGGTAAAAGGATTAATGAATTATAGACAAAAGTATGTTAATTAGGGTTTA
AACTGGTGTAAATAATGTTTTTTTTTTTTTTCAACCTGATAAAAAAAGAA
ATAAAATAATTGATTCGACAAATCCTTTTGAACCTTCAGTTGCTTTTTCA
TTACTATTTTGTTTTTTTCTCAGTTCCTGCTGCAGCAACTGGTGGATATG
TGTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAACTGTCGTC
GCTGGTAAGACTATCACTCAAATTTACCAGATGAATGCACGTCAAAATAT
TTCAAAACCTTATTTTATAAAAAATTACTCAATAGTAGGTTTTAAAATAG
ATCACTCTTTGGTATCTGGTCAAAAATATAAGCTCGATAAAATCGCGAAA
TTTAATCCCCGTTAAAGTTTATCCCATTAAAGTAGTAACAAAATATTTCT
GTAATTAACAGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACCT
CAGTCGCAGCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCAA
CAAGTCTTAACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTGA
TATGATCCAAGGACTAGCAGCAGGCTCAACAGTTGGTAAGTGAGTAATCT
ACGTAAGTCATCTCTTGAGAATAACTTTTAAAAGTTTGAGTGTCCAAAAG
TTCTAAGTAAACATCATAGATCAATAACAGTACTTTGTATGTATATGATA
TTATCAATCATATTATCATATTTTTAGCCTTGGGCGCAGCGTATCCAAGC
GAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGGAGCCAGTGC
GCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACGTCGTCTATT
CTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCAGCGGCTCGT
GGTTACCACCCTTATGGAAGATAAGATATTGAACTTCAAAACTGAAAAAA
GAGACTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAGCTTTGAAAG
ACTCGATCTTCACTCATGGACAGCGATTTTGTAAATAAAAACTTTTTTAA
TCTATTGATTGATTGATGCTTTGTCAGTTGGTTCTTCGATACGTGATAAT
CATATTGCTCTTTGGTGACAATTCGGTTTTATAAATGAAAAGACATTTTA
TTGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTTACGCGATAA
TTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGGACATGCGCG
ATATTTCTCTCTTTTTATTTGAAAGAAAATTTATTCAATGGAATTACAAA
ATATTTTGATTGTTTATCCATTTCTTATTTTTTTATCGGAATTTTCTTTA
CTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056946-exon-scaffold_284-1575043694:888462..888743TCONS_00056946-exon-scaffold_284-1575043694:888462..888743Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:888383..888408TCONS_00056946-exon-scaffold_284-1575043694:888383..888408Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:887415..887537TCONS_00056946-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:885777..885870TCONS_00056946-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:884763..884816TCONS_00056946-exon-scaffold_284-1575043694:884763..884816Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:884556..884615TCONS_00056946-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:884277..884390TCONS_00056946-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:884126..884174TCONS_00056946-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:883107..883189TCONS_00056946-exon-scaffold_284-1575043694:883107..883189Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:881927..881984TCONS_00056946-exon-scaffold_284-1575043694:881927..881984Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:881357..881494TCONS_00056946-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:881040..881120TCONS_00056946-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:880659..880832TCONS_00056946-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1575043694:879845..880516TCONS_00056946-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:888462..888743TCONS_00056946-exon-scaffold_284-1510915933:888462..888743Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:888383..888408TCONS_00056946-exon-scaffold_284-1510915933:888383..888408Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:887415..887537TCONS_00056946-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:885777..885870TCONS_00056946-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:884763..884816TCONS_00056946-exon-scaffold_284-1510915933:884763..884816Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:884556..884615TCONS_00056946-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:884277..884390TCONS_00056946-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:884126..884174TCONS_00056946-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:883107..883189TCONS_00056946-exon-scaffold_284-1510915933:883107..883189Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:881927..881984TCONS_00056946-exon-scaffold_284-1510915933:881927..881984Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:881357..881494TCONS_00056946-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:881040..881120TCONS_00056946-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:880659..880832TCONS_00056946-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1510915933:879845..880516TCONS_00056946-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:888462..888743TCONS_00056946-exon-scaffold_284-1491911889:888462..888743Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:888383..888408TCONS_00056946-exon-scaffold_284-1491911889:888383..888408Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:887415..887537TCONS_00056946-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:885777..885870TCONS_00056946-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:884763..884816TCONS_00056946-exon-scaffold_284-1491911889:884763..884816Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:884556..884615TCONS_00056946-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:884277..884390TCONS_00056946-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:884126..884174TCONS_00056946-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:883107..883189TCONS_00056946-exon-scaffold_284-1491911889:883107..883189Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:881927..881984TCONS_00056946-exon-scaffold_284-1491911889:881927..881984Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:881357..881494TCONS_00056946-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:881040..881120TCONS_00056946-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:880659..880832TCONS_00056946-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056946-exon-scaffold_284-1491911889:879845..880516TCONS_00056946-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.401	16.2206	9.61615	11.9037	14.7066	37.9696	2.94587	12.1443	18.9674	13.2767	22.548	22.2096	17.8623	20.3419	32.5454	22.2197	49.5868	43.1275	22.8206	13.5519	11.9017	11.8231	31.502	20.6398	21.562	22.7442	14.9776	10.3403	21.8446	25.4698
Blast
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BLAST of TCONS_00056946 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.527e-34
Identity = 76/221 (34.39%), Postives = 110/221 (49.77%), Query Frame = 1 
Query:  274 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMVDPKPAVPQGPGVQNKPLYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEM-----KVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQ 915
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K +DPK A P+                                    +  P+M     K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPR------------------------------------RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00056946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H8.527e-3434.39RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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