TCONS_00056958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056958
Unique NameTCONS_00056958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056958 ID=TCONS_00056958|Name=TCONS_00056958|organism=Clytia hemisphaerica|type=transcript|length=4073bp
AGGtttaaattttgccaaaaagctATAGGTGAAAATTGCAGATACTATCC
GAAAAATAATAGTACGGGTTTTGGAAAGCTGAAATGGATGGCATAATGAA
GAAGACAattggaaaatttcattttcattcgcATTCTTTCTTTGAGTGAA
AAGTAACACCATAAcagagaaaaaaagggaaagtcGTCCAAATGATACAC
CATAACCGATTGAGCATTTAATTTTATCAGTTGAATGTATCTCAATCGAT
TAGGATTATTTGAACGACTTTTTTAATCATACAATTTCACTTGTTTTTTT
TCCATAAATCATagaccaaaaattttttttacaaggaTGGAAAAATACAA
TCATTGAActgagaaaacaaaaaataatcatataatttataatttttttt
tagttaaTGTAAGACAATTAAGGTGTGTGAATTTCATTGAAGTTTCAAAC
GAAAAAGGTGCAAGAATCTACCTAGCCAAAAAACTTTTCATAGAGAAATG
TTTCAACAACCCACAAAATTATGCTGAGGCTCAGAAAATATTTAGAACTG
AATGTTGAGTCATTTTTTGACACCAATTTCAGATTCAACGTTTGCAGTTA
GAATCTCCTTTTCGCAATGATGTTACCATAAGTAGAAGGTGTAGAAAAAT
ATATctcttatgttttttttgtgatataaacaaaaaaaaaatcgaacgtG
CATAAAATAATCGTATATAAAACactgaaacaaaaacaaacaaataaaca
aacaaacagataACAAGAttctttataaaataaaataattgacCCTGAAT
TTTAACGACAAAAATCGATATGGTATCTCTAATTTTTTATGTAAATCAAT
AATTTTGTNGTTTTTTAACGACAAAAATCGATATTGTATCTCTAAATTTT
TATGTAAATCaataattttgtataaataaaaaaagtacaaaaaaaacaac
aaacaaacattaAACAAAAGGAATCATTGTCcccattttttttgttttat
agaaaaataaatattatagcCAAAACTTgataacgaaaaaaaaacccacT
TTTTATTCTGATagaaattttgttgaaaagtCTTGAACAAATAAATCAAT
CGAGTTATACGAAAAGGCAAGCCTGAACTTAATAGTTAGAGAGTTGTGAA
AGATTTCGATCAATATCGTGCGACTCTGTTCatagctttaaaatagttct
caATCTAtcagcataaaaatattttgctttaaaACGACAGTGAAAAAAAT
TTACGTTGGTATAATAAATTTGTACATGCTAGTATTCTTTTAAGTATAAT
ATCTGCTTTATAACATACATAATATAGGTCTTGATACTTTGAAAACCAGG
TCCTAATAACAAGGAATAATAAAAGTACCCAGTctacaaatttttctttt
tttgtagtTACTTTACTGTTCTTATAGTTTTTACtagtagatgcttataa
aaaaatcttacagATAAGTAAGGCAAAAGACCCTTTACACTGCTTTTTCA
TCACAGTGTGAAAAGAACCTAAAACCTTTTATTTCTTTATAAAGCCAGTT
TTCTCCAAAGGAAACTTTATCTCGGAAAAGCTATTTtagaagaatgaaga
aaagATTTACTGAAAAGCGCAAGGGTGATGTGTGTGatgcaaaacaaaac
aaaaacaaaaaactataaCAAGAGGCTCCTGGGCCTTTCTGACCCTTTTC
GAACAAAAGTACTGGTAAAAGGACATCAAACCATCAGCAGGCAGTGAGAG
AGTCAGATTTTTCAAAGGTTTAGCCTCAAAAATGTACTCCATTCCCAGGC
TAAACCAttgaaagaaaaagtcaaaaaaaaaagtttgaacatcTATTTTA
ATAGAATATTAGAAGTATAGAGCTATTTCATTCATACTAGATAggaaaaa
gattataaatttcaaaacgtTTCATCAGTGAATTCTCAAAAGAATATAAA
ATTTCTTTAGGTCTGTTGTTAGCTTTCCGGTTACTAAGGCGGATATAAAA
CAAAGACTGATGCTAAACAGACTGACTTTTATGAAGTAATTAACATACCA
ATATTGAATTGTATAATATAGAAAGGCCTTTCCTTCTTACAAACCGGTTT
AGTTTAGGAAAAGAGGATATTTCTTAGTAATACAGTGGTAGGTAGTTTGC
AAAAAAGAATATTcctgaaaaaaagacaaaaacactACTAACGcctaaaa
taaaaactaaaacgaaaaaaaaaaaatcaaattcttcattgaaaaacata
aattttgattttacatatagaaaaataaacTATGAAAAAAAAAGGGACGA
GTGATGTAACTTGTGACCAGCACGAAATATTTCTTTGTAAACAATAAATA
AAACTGTAATTATCATAAAAGCGAAAAAAAACCTTCAAAACAACTTGAAG
TCCTCTGTGAAAAAAAGTACAACCCCTTTGTcaatatacactttttttat
aagaaccagtaaaattttgctgaggctcagctgttcttattttttttggc
actttaagCCTCGAATTTGTTCTTaccctgttcttatttataattgaggt
attttaggcactTTACCCAATTTCTACTACTTTGACCTCTAAATTGATTG
AagttgagtaatttcaggctcatcATTGATCttatttttggtgattttga
gcctcattgttcttataaaaaaagtgtatagtTAATAAACTCTATACAAC
AAAGGCAATCTTTTATTCACAGATGAACTTACCTTTTGTTATTATTGata
taaaacaataaaagatagaattttataaaaatcaaaacagcgacaaaaaa
aatgaaagttttataATGAAATGTGCGAATGTGCATAAGAGCGGACGAGC
AGTGAAGCGGAAAGAAGCATCATGCACAGAGTAGTTTAAAAGATGGATAG
TAAAAGCATGTCTGTATTCATTTCGAATTCGATCGTTTGATGTTGTTATG
CATTTTGTGTAATTTTCAAAGGATAAAAATAGGttttcaaataattaaaa
aagaaaaacgaaaaaactcAGAGAAGACCCACTAAAACcacgaaaaattt
attttcaagtaatcaaaatgaaaattaaccccaattttttgaaagattcg
tTCGCAGTAACAATGAAAGtaacaacaaaaaagtaaaacaaacaaacaca
taTCATATAAACACAATAAAATAGTGAGCCCGTTACTTCCAAATCACCTA
TCAGAATATAATAGCCAGCTTTCACACGAAGGTACTGGGGAAAAGGTTGA
ATAATGATAATCATAATAACAATAACGATAATTTTCAAGTCACTAacttt
ttggtaacaaaaattAGTCTATTGTTGATGATAAAGGGTAATAAACACAT
TTTTAATAATAGCAATAATAATAAcactttgtttttttataagtaagAAA
GCCTATCTATGAATACTCTTTTTTGaatagattaatttttttagataatA
GTAACTTTTCTCGTTGTCATAGTGTAGTTCAGTAACCGATTCTTCTTATT
AATAACAAGGATTGGGTTTTGGAGGGTCAAATTCAATCCATCATCCAACT
TCCATCTTTTTTGTCCTTCATCAATCAAACATTTAAAACACACAAACAAA
AACATGATAAGCCAAAACCATCCGTAGACTAGGTGACAGCAAGCAGATCA
AGCCAAGTTTCAAAAACCAAAACAGAAAAACGAGACCAGCCACTCTTTTT
TCGACACATTTTTTTATCGAGAAAATGATTGGCTACCAGGTCCAGGTTGT
GGTGTGCTAGCTGGAGCGAACGGAGTAACACCAGAGGGGACACTGTTATG
AGTAGCAATAGCTGCTCCATAATTTGGTGCATAAGCAGCAGCTGGTGTGG
CCCCTCCAGCCCCACTACCACCACCTGAGGAGTAATCACTGTATNGTAAG
CGGCAGCCGGTGTTGCACCTCCAGCCCCACTACCACCACCTGAGGAGTAA
TCACTGTACGAAGAAGGACTTACTGCGCTGGGAGATTGTGCATATCCACC
AACCTGACTTCCGCTAGCAGCTGCCATATGGTAGGGAGGTCTGAGAGGAT
ATCGACCACTAATTGAGAGCTCT
Run BLAST on NCBI

transcript from alignment at scaffold_284:901754..905944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056958 ID=TCONS_00056958|Name=TCONS_00056958|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at scaffold_284:901754..905944- (Clytia hemisphaerica)
AGGTTTAAATTTTGCCAAAAAGCTATAGGTGAAAATTGCAGATACTATCC GAAAAATAATAGTACGGGTTTTGGAAAGCTGAAATGGATGGCATAATGAA GAAGACAATTGGAAAATTTCATTTTCATTCGCATTCTTTCTTTGAGTGAA AAGTAACACCATAACAGAGAAAAAAAGGGAAAGTCGTCCAAATGATACAC CATAACCGATTGAGCATTTAATTTTATCAGTTGAATGTATCTCAATCGAT TAGGATTATTTGAACGACTTTTTTAATCATACAATTTCACTTGTTTTTTT TCCATAAATCATAGACCAAAAATTTTTTTTACAAGGATGGAAAAATACAA TCATTGAACTGAGAAAACAAAAAATAATCATATAATTTATAATTTTTTTT TAGTTAATGTAAGACAATTAAGGTGTGTGAATTTCATTGAAGTTTCAAAC GAAAAAGGTGCAAGAATCTACCTAGCCAAAAAACTTTTCATAGAGAAATG TTTCAACAACCCACAAAATTATGCTGAGGCTCAGAAAATATTTAGAACTG AATGTTGAGTCATTTTTTGACACCAATTTCAGATTCAACGTTTGCAGTTA GAATCTCCTTTTCGCAATGATGTTACCATAAGTAGAAGGTGTAGAAAAAT ATATCTCTTATGTTTTTTTTGTGATATAAACAAAAAAAAAATCGAACGTG CATAAAATAATCGTATATAAAACACTGAAACAAAAACAAACAAATAAACA AACAAACAGATAACAAGATTCTTTATAAAATAAAATAATTGACCCTGAAT TTTAACGACAAAAATCGATATGGTATCTCTAATTTTTTATGTAAATCAAT AATTTTGTNGTTTTTTAACGACAAAAATCGATATTGTATCTCTAAATTTT TATGTAAATCAATAATTTTGTATAAATAAAAAAAGTACAAAAAAAACAAC AAACAAACATTAAACAAAAGGAATCATTGTCCCCATTTTTTTTGTTTTAT AGAAAAATAAATATTATAGCCAAAACTTGATAACGAAAAAAAAACCCACT TTTTATTCTGATAGAAATTTTGTTGAAAAGTCTTGAACAAATAAATCAAT CGAGTTATACGAAAAGGCAAGCCTGAACTTAATAGTTAGAGAGTTGTGAA AGATTTCGATCAATATCGTGCGACTCTGTTCATAGCTTTAAAATAGTTCT CAATCTATCAGCATAAAAATATTTTGCTTTAAAACGACAGTGAAAAAAAT TTACGTTGGTATAATAAATTTGTACATGCTAGTATTCTTTTAAGTATAAT ATCTGCTTTATAACATACATAATATAGGTCTTGATACTTTGAAAACCAGG TCCTAATAACAAGGAATAATAAAAGTACCCAGTCTACAAATTTTTCTTTT TTTGTAGTTACTTTACTGTTCTTATAGTTTTTACTAGATGCTTATAAAAA AATCTTACAGATANGACTTGGTCCTAATAACAAGGAATAATAAAAGTACC CAGTCTACAAATTTTTCTTTTTTTGTAGTTACTTTACTGTTCTTATAGTT TTTACTAGATGCTTATAAAAAAATCTTACAGATAAGTAAGGCAAAAGACC CTTTACACTGCTTTTTCATCACAGTGTGAAAAGAACCTAAAACCTTTTAT TTCTTTATAAAGCCAGTTTTCTCCAAAGGAAACTTTATCTCGGAAAAGCT ATTTTAGAAGAATGAAGAAAAGATTTACTGAAAAGCGCAAGGGTGATGTG TGTGATGCAAAACAAAACAAAAACAAAAAACTATAACAAGAGGCTCCTGG GCCTTTCTGACCCTTTTCGAACAAAAGTACTGGTAAAAGGACATCAAACC ATCAGCAGGCAGTGAGAGAGTCAGATTTTTCAAAGGTTTAGCCTCAAAAA TGTACTCCATTCCCAGGCTAAACCATTGAAAGAAAAAGTCAAAAAAAAAA GTTTGAACATCTATTTTAATAGAATATTAGAAGTATAGAGCTATTTCATT CATACTAGATAGGAAAAAGATTATAAATTTCAAAACGTTTCATCAGTGAA TTCTCAAAAGAATATAAAATTTCTTTAGGTCTGTTGTTAGCTTTCCGGTT ACTAAGGCGGATATAAAACAAAGACTGATGCTAAACAGACTGACTTTTAT GAAGTAATTAACATACCAATATTGAATTGTATAATATAGAAAGGCCTTTC CTTCTTACAAACCGGTTTAGTTTAGGAAAAGAGGATATTTCTTAGTAATA CAGTGGTAGGTAGTTTGCAAAAAAGAATATTCCTGAAAAAAAGACAAAAA CACTACTAACGCCTAAAATAAAAACTAAAACGAAAAAAAAAAAATCAAAT TCTTCATTGAAAAACATAAATTTTGATTTTACATATAGAAAAATAAACTA TGAAAAAAAAAGGGACGAGTGATGTAACTTGTGACCAGCACGAAATATTT CTTTGTAAACAATAAATAAAACTGTAATTATCATAAAAGCGAAAAAAAAC CTTCAAAACAACTTGAAGTCCTCTGTGAAAAAAAGTACAACCCCTTTGTC AATATACACTTTTTTTATAAGAACCAGTAAAATTTTGCTGAGGCTCAGCT GTTCTTATTTTTTTTGGCACTTTAAGCCTCGAATTTGTTCTTACCCTGTT CTTATTTATAATTGAGGTATTTTAGGCACTTTACCCAATTTCTACTACTT TGACCTCTAAATTGATTGAAGTTGAGTAATTTCAGGCTCATCATTGATCT TATTTTTGGTGATTTTGAGCCTCATTGTTCTTATAAAAAAAGTGTATAGT TAATAAACTCTATACAACAAAGGCAATCTTTTATTCACAGATGAACTTAC CTTTTGTTATTATTGATATAAAACAATAAAAGATAGAATTTTATAAAAAT CAAAACAGCGACAAAAAAAATGAAAGTTTTATAATGAAATGTGCGAATGT GCATAAGAGCGGACGAGCAGTGAAGCGGAAAGAAGCATCATGCACAGAGT AGTTTAAAAGATGGATAGTAAAAGCATGTCTGTATTCATTTCGAATTCGA TCGTTTGATGTTGTTATGCATTTTGTGTAATTTTCAAAGGATAAAAATAG GTTTTCAAATAATTAAAAAAGAAAAACGAAAAAACTCAGAGAAGACCCAC TAAAACCACGAAAAATTTATTTTCAAGTAATCAAAATGAAAATTAACCCC AATTTTTTGAAAGATTCGTTCGCAGTAACAATGAAAGTAACAACAAAAAA GTAAAACAAACAAACACATATCATATAAACACAATAAAATAGTGAGCCCG TTACTTCCAAATCACCTATCAGAATATAATAGCCAGCTTTCACACGAAGG TACTGGGGAAAAGGTTGAATAATGATAATCATAATAACAATAACGATAAT TTTCAAGTCACTAACTTTTTGGTAACAAAAATTAGTCTATTGTTGATGAT AAAGGGTAATAAACACATTTTTAATAATAGCAATAATAATAACACTTTGT TTTTTTATAAGTAAGAAAGCCTATCTATGAATACTCTTTTTTGAATAGAT TAATTTTTTTAGATAATAGTAACTTTTCTCGTTGTCATAGTGTAGTTCAG TAACCGATTCTTCTTATTAATAACAAGGATTGGGTTTTGGAGGGTCAAAT TCAATCCATCATCCAACTTCCATCTTTTTTGTCCTTCATCAATCAAACAT TTAAAACACACAAACAAAAACATGATAAGCCAAAACCATCCGTAGACTAG GTGACAGCAAGCAGATCAAGCCAAGTTTCAAAAACCAAAACAGAAAAACG AGACCAGCCACTCTTTTTTCGACACATTTTTTTATCGAGAAAATGATTGG CTACCAGGTCCAGGTTGTGGTGTGCTAGCTGGAGCGAACGGAGTAACACC AGAGGGGACACTGTTATGAGTAGCAATAGCTGCTCCATAATTTGGTGCAT AAGCAGCAGCTGGTGTGGCCCCTCCAGCCCCACTACCACCACCTGAGGAG TAATCACTGTATNGTAAGCGGCAGCCGGTGTTGCACCTCCAGCCCCACTA CCACCACCTGAGGAGTAATCACTGTACGAAGAAGGACTTACTGCGCTGGG AGATTGTGCATATCCACCAACCTGACTTCCGCTAGCAGCTGCCATATGGT AGGGAGGTCTGAGAGGATATCGACCACTAATTGAGAGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035869XLOC_035869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056958-exon-scaffold_284-1575043694:904508..905944TCONS_00056958-exon-scaffold_284-1575043694:904508..905944Clytia hemisphaericaexon
TCONS_00056958-exon-scaffold_284-1575043694:901754..904389TCONS_00056958-exon-scaffold_284-1575043694:901754..904389Clytia hemisphaericaexon
TCONS_00056958-exon-scaffold_284-1510915933:904508..905944TCONS_00056958-exon-scaffold_284-1510915933:904508..905944Clytia hemisphaericaexon
TCONS_00056958-exon-scaffold_284-1510915933:901754..904389TCONS_00056958-exon-scaffold_284-1510915933:901754..904389Clytia hemisphaericaexon
TCONS_00056958-exon-scaffold_284-1491911889:904508..905944TCONS_00056958-exon-scaffold_284-1491911889:904508..905944Clytia hemisphaericaexon
TCONS_00056958-exon-scaffold_284-1491911889:901754..904389TCONS_00056958-exon-scaffold_284-1491911889:901754..904389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:901754..905944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.0413349 tpm) - - (1.81272 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.244108 0.254175 0.0413349 0.0811393 0.727074 0.283804 0.53412 0.668197 1.17389 1.10056 1.35509 0.922908 1.61592 1.81272 1.28468 1.05432 0.942396 1.01576 1.53282 1.48785 0.859435 0.768185 0.829704 0.598997 0.736638 0.862249 0.871919 0.787077 0.732987 0.573953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
5001000150020002500300035004000Sequence
Match NameE-valueIdentityDescription
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