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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056962 ID=TCONS_00056962|Name=TCONS_00056962|organism=Clytia hemisphaerica|type=transcript|length=2098bpRun BLAST on NCBI protein sequence of TCONS_00056962-protein >TCONS_00056962-protein ID=TCONS_00056962-protein|Name=TCONS_00056962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp MLGQVLRQTRAVSRQGLSASVRNASTLIVVEHNDNQLTPATLHSVTAAKQRun BLAST on NCBI transcript from alignment at scaffold_284:927496..964460- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056962 ID=TCONS_00056962|Name=TCONS_00056962|organism=Clytia hemisphaerica|type=transcript|length=36965bp|location=Sequence derived from alignment at scaffold_284:927496..964460- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:927496..964460- >TCONS_00056962 ID=TCONS_00056962|Name=TCONS_00056962|organism=Clytia hemisphaerica|type=CDS|length=9099bp|location=Sequence derived from alignment at scaffold_284:927496..964460- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056962 vs. Swiss-Prot (Human)
Match: ETFA (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens GN=ETFA PE=1 SV=1) HSP 1 Score: 370.933 bits (951), Expect = 7.288e-122 Identity = 188/294 (63.95%), Postives = 236/294 (80.27%), Query Frame = 3
Query: 1146 VRNASTLIVVEHNDNQLTPATLHSVTAAKQLGGDVTCLVAGTNCGPAVESISKIEGVNKVLVAQHDLYKGFLPEMLTPLVLEAQNQFKFSHILATATSFGKNLLPRIAAKLDVAPISDVTEIEDENTFVRTIYAGNAVTKIKSNDGIKVMTVRATSFDPAAEGASGIASENVDPITGSEDLAKWEGAELSKSDRPEITSASVVVSGGRGLKSGENFELLYKLADKMNXXXXXXXXXXXXXYVPNDMQIGQTGKMVAPELYIAVAISGAIQHLAGMKDSKTIVAINKDADAPIFQ 2027
+R STL++ EH ++ L P TL+++TAA +LGG+V+CLVAGT C + + K+ G+ KVLVAQHD+YKG LPE LTPL+L Q QF ++HI A A++FGKNLLPR+AAKL+VAPISD+ I+ +TFVRTIYAGNA+ +K ++ +KV +VR TSFD AA +SE T ++++W +L+KSDRPE+T A VVVSGGRGLKSGENF+LLY LAD+++AAVGASRAAVDAG+VPNDMQ+GQTGK+VAPELYIAV ISGAIQHLAGMKDSKTIVAINKD +APIFQ
Sbjct: 17 LRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASS-TSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQ 309 The following BLAST results are available for this feature:
BLAST of TCONS_00056962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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