TCONS_00057028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057028
Unique NameTCONS_00057028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057028 ID=TCONS_00057028|Name=TCONS_00057028|organism=Clytia hemisphaerica|type=transcript|length=528bp
gccatttttaaaccatacaggggtatatattgacaaactttttcagGGGT
TTTGAGATTTTCTGAGGGGTTTCAGCATATATCTAAATTTCCAAGCTGAT
TAGGGCTCCTCAAATGTCATCAATAGTTGTTTTTTTCCAGGCCCTTTTTT
ATTTGTCAAAGAATAAGGTCATGGTCacaaataagttgtgttcgcgtccT
CTGACAGACTCactttctatcttaaaaatcTGACCCTTTTCTAGTCGGAA
AGTCggaaaatttgtcagatttttAGCAAtattattcaaagaattttgta
GATTCAGCATAGCCAGGCAGCGTTTTGATTATCGagtgtttttaagattg
ttatccgcaatttttcaaagattttttgcgTTAAAAAGTGCTGCGCAACT
GCTTTATGCGCAGTTGTGATATGCAAAATAATCACATTACAGCTCACTCT
CTCACGCACTCAATGATTTTTTCCGCCTGAACAATATGCTCAGAGCGCAT
TTTTCCAATGATTTTAGCACCGCTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_284:957372..957899

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057028 ID=TCONS_00057028|Name=TCONS_00057028|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_284:957372..957899 (Clytia hemisphaerica)
ATCAAGCGGTGCTAAAATCATTGGAAAAATGCGCTCTGAGCATATTGTTC
AGGCGGAAAAAATCATTGAGTGCGTGAGAGAGTGAGCTGTAATGTGATTA
TTTTGCATATCACAACTGCGCATAAAGCAGTTGCGCAGCACTTTTTAAcg
caaaaaatctttgaaaaattgcggataacaatcttaaaaacactCGATAA
TCAAAACGCTGCCTGGCTATGCTGAATCtacaaaattctttgaataataT
TGCTaaaaatctgacaaattttccGACTTTCCGACTAGAAAAGGGTCAga
tttttaagatagaaagtGAGTCTGTCAGAggacgcgaacacaacttattt
gtGACCATGACCTTATTCTTTGACAAATAAAAAAGGGCCTGGAAAAAAAC
AACTATTGATGACATTTGAGGAGCCCTAATCAGCTTGGAAATTTAGATAT
ATGCTGAAACCCCTCAGAAAATCTCAAAACCCctgaaaaagtttgtcaat
atatacccctgtatggtttaaaaatggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035923XLOC_035923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057028-exon-scaffold_284-1491911889:957372..957899TCONS_00057028-exon-scaffold_284-1491911889:957372..957899Clytia hemisphaericaexon
TCONS_00057028-exon-scaffold_284-1510915933:957372..957899TCONS_00057028-exon-scaffold_284-1510915933:957372..957899Clytia hemisphaericaexon
TCONS_00057028-exon-scaffold_284-1575043694:957372..957899TCONS_00057028-exon-scaffold_284-1575043694:957372..957899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:957372..957899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.667293	0.216905	0.757322	1.11135	0.599921	1.06665	0.714925	0.937026	0.656034	0.812604	0.676057	1.03696	0.36983	0.614515	0.568366	0.474401	0.584423	0.427868	0.472898	0.618567	1.61294	0.786736	0.127517	0.347796	0.597036	0	0.914991	0.651002	0.617203	0.377299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top