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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057032 ID=TCONS_00057032|Name=TCONS_00057032|organism=Clytia hemisphaerica|type=transcript|length=1801bp
ggggaatcaaattttgggtgccaattttttttcggacactttggtgtgat
tttcggacaaacatgatgaaaatttagcttgagaaaatagagtcctgttg
tatatttttgaaaagctctcaaaaaattaagattagagatatattgtgag
tataggtgatttctgtacctaactcgagatattgagcttatTTAAAAAGC
GCAAAAACGGGACAAATTGTCCATCGTAAAAACCCATGTAAAGAATTCGG
TTGGCTCGCTGCAACTGTGTGCAGGCCAAGAGGCTGGTTGTGAAGTAGCT
ATCCACGCGATTAAGGATGTATTTGACCATGAAGCCGTCCTTCTCATTGA
CGCAAGGAACGTCTTTAATTCCATAAATCGTAAGGTGTTCGTGCACAACT
GCGGCATCATCTGCCCAGCCATCACACAGTACGTAGAAAATAGCTACATC
AAACCATCACAGCTGGCGTCGAAATTTCCTCTAACGAGGTCACGACGGTG
ATCCAATCGCAATGGCTGTGTATGCAATTGCAGCTATGCTACTTCTTCTG
ATGGTGCTGGGGATCACCGACAACCTGCGCCAGGAATACAAACGAAATCT
GGAGCCTATTCAGATGACTTTCGGCCGCAGGGTCTATTCAAAACCTAGTG
AAATGGTGGGATGCCTTGTATCGTCTTGGACCCAAATTTGGATACCATCC
TCAACCAAGCAAGTGTTGGCTAATTGTGAAACCAAAACAGCTCACAATTG
CCCAACAAGCCTTCTCGTCGACACAAATCAACATCATGACAGAAGGGAAA
CGCCACCTCGGTGCAGTCATCGGCTCAACAACCTTCCAAGATAAATATGT
CGCAGAAAAAATTGACAGCATGTGTAACGAACTACTTCTTCTCGCAGAGA
TCGGCAGAATAGAACCGCATATGCTGCGTATGCTGGCTTCACCTGTCGGT
TTCGTCATAAGCTAACTTTCATTATGAGGACGATACCAGACATTTCCAAA
CACATGAGAAGAATGGATCAGATTATCCTTCACTATCAATCACAGGTGGA
ATTCATCTCAACGACGTAAAGAGAAGCTAATATCTTTACCTACCAAATAT
GGTGGACTTGCTATCACGATCTTCGAAGAGCAATGTGTGATCGAGTACGC
CAACTCTCGACGAATTACGTCACACCTTAGTGACGCAATAAAGTCGTAAA
CCCGTGAATACACTGATGATCCCAATCAAACCAAGAAGAAGTCGACAATT
CGAAAACTAAAGATCGACAAAGTCAACGATGACCCTTGAGCCTCTTCTCA
ACGAACAACAAAGGAAATTGCTGTTGTTGAACCAAGAAATACCGCTTCAT
CGTGGTTGTCAACGCTACCATTTGAGAGTTCGCCATTCTCGCTAGACCAC
GGTCTGCGCTCCGACAAAACAAGCTGAGAAACTTTCTCGCGAGAACATTG
AAAGAAGTTTGCCATGACGTACAGATCGAGCCACCCCTCCAATCGTTGAT
GCGAGTCGAAAACCTCCCAAAGTCATCAGTGAAATCAGACGGAGCTCGTT
TAGACGTTTCAGCAAGAGATTTCTGGATGACAGGCCAAAAAGCTTTTCTT
GATATAAGGGTTTTTAGTCCACTCGCTAAAAGGAATGTCTCCTTAGAACC
TCAAAACCTGAGGAATGTCTCCTTAGAACCTGCTACAACACGGTTCACTA
ACGCCAATGGTGTTCTCCGCAACTGGTGGTGACGGTCGAGAATGTGGTGA
ATCCATTCGATGGCTTGTCTCGATGATCTCAGAGAAGAGACACTCTTCGC
A Run BLAST on NCBI protein sequence of TCONS_00057032-protein >TCONS_00057032-protein ID=TCONS_00057032-protein|Name=TCONS_00057032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MAVYAIAAMLLLLMVLGITDNLRQEYKRNLEPIQMTFGRRVYSKPSEMVG
CLVSSWTQIWIPSSTKQVLANCETKTAHNCPTSLLVDTNQHHDRRETPPR
CSHRLNNLPR Run BLAST on NCBI transcript from alignment at scaffold_284:1163236..1165036 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057032 ID=TCONS_00057032|Name=TCONS_00057032|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_284:1163236..1165036 (Clytia hemisphaerica)
TGCGAAGAGTGTCTCTTCTCTGAGATCATCGAGACAAGCCATCGAATGGA
TTCACCACATTCTCGACCGTCACCACCAGTTGCGGAGAACACCATTGGCG
TTAGTGAACCGTGTTGTAGCAGGTTCTAAGGAGACATTCCTCAGGTTTTG
AGGTTCTAAGGAGACATTCCTTTTAGCGAGTGGACTAAAAACCCTTATAT
CAAGAAAAGCTTTTTGGCCTGTCATCCAGAAATCTCTTGCTGAAACGTCT
AAACGAGCTCCGTCTGATTTCACTGATGACTTTGGGAGGTTTTCGACTCG
CATCAACGATTGGAGGGGTGGCTCGATCTGTACGTCATGGCAAACTTCTT
TCAATGTTCTCGCGAGAAAGTTTCTCAGCTTGTTTTGTCGGAGCGCAGAC
CGTGGTCTAGCGAGAATGGCGAACTCTCAAATGGTAGCGTTGACAACCAC
GATGAAGCGGTATTTCTTGGTTCAACAACAGCAATTTCCTTTGTTGTTCG
TTGAGAAGAGGCTCAAGGGTCATCGTTGACTTTGTCGATCTTTAGTTTTC
GAATTGTCGACTTCTTCTTGGTTTGATTGGGATCATCAGTGTATTCACGG
GTTTACGACTTTATTGCGTCACTAAGGTGTGACGTAATTCGTCGAGAGTT
GGCGTACTCGATCACACATTGCTCTTCGAAGATCGTGATAGCAAGTCCAC
CATATTTGGTAGGTAAAGATATTAGCTTCTCTTTACGTCGTTGAGATGAA
TTCCACCTGTGATTGATAGTGAAGGATAATCTGATCCATTCTTCTCATGT
GTTTGGAAATGTCTGGTATCGTCCTCATAATGAAAGTTAGCTTATGACGA
AACCGACAGGTGAAGCCAGCATACGCAGCATATGCGGTTCTATTCTGCCG
ATCTCTGCGAGAAGAAGTAGTTCGTTACACATGCTGTCAATTTTTTCTGC
GACATATTTATCTTGGAAGGTTGTTGAGCCGATGACTGCACCGAGGTGGC
GTTTCCCTTCTGTCATGATGTTGATTTGTGTCGACGAGAAGGCTTGTTGG
GCAATTGTGAGCTGTTTTGGTTTCACAATTAGCCAACACTTGCTTGGTTG
AGGATGGTATCCAAATTTGGGTCCAAGACGATACAAGGCATCCCACCATT
TCACTAGGTTTTGAATAGACCCTGCGGCCGAAAGTCATCTGAATAGGCTC
CAGATTTCGTTTGTATTCCTGGCGCAGGTTGTCGGTGATCCCCAGCACCA
TCAGAAGAAGTAGCATAGCTGCAATTGCATACACAGCCATTGCGATTGGA
TCACCGTCGTGACCTCGTTAGAGGAAATTTCGACGCCAGCTGTGATGGTT
TGATGTAGCTATTTTCTACGTACTGTGTGATGGCTGGGCAGATGATGCCG
CAGTTGTGCACGAACACCTTACGATTTATGGAATTAAAGACGTTCCTTGC
GTCAATGAGAAGGACGGCTTCATGGTCAAATACATCCTTAATCGCGTGGA
TAGCTACTTCACAACCAGCCTCTTGGCCTGCACACAGTTGCAGCGAGCCA
ACCGAATTCTTTACATGGGTTTTTACGATGGACAATTTGTCCCGTTTTTG
CGCTTTTTAAataagctcaatatctcgagttaggtacagaaatcacctat
actcacaatatatctctaatcttaattttttgagagcttttcaaaaatat
acaacaggactctattttctcaagctaaattttcatcatgtttgtccgaa
aatcacaccaaagtgtccgaaaaaaaattggcacccaaaatttgattccc
c Coding sequence (CDS) from alignment at scaffold_284:1163236..1165036 >TCONS_00057032 ID=TCONS_00057032|Name=TCONS_00057032|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_284:1163236..1165036 (Clytia hemisphaerica)
TTATCTTGGAAGGTTGTTGAGCCGATGACTGCACCGAGGTGGCGTTTCCC
TTCTGTCATGATGTTGATTTGTGTCGACGAGAAGGCTTGTTGGGCAATTG
TGAGCTGTTTTGGTTTCACAATTAGCCAACACTTGCTTGGTTGAGGATGG
TATCCAAATTTGGGTCCAAGACGATACAAGGCATCCCACCATTTCACTAG
GTTTTGAATAGACCCTGCGGCCGAAAGTCATCTGAATAGGCTCCAGATTT
CGTTTGTATTCCTGGCGCAGGTTGTCGGTGATCCCCAGCACCATCAGAAG
AAGTAGCATAGCTGCAATTGCATACACAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057032-exon-scaffold_284-1491911889:1163236..1165036 | TCONS_00057032-exon-scaffold_284-1491911889:1163236..1165036 | Clytia hemisphaerica | exon |
| TCONS_00057032-exon-scaffold_284-1510915933:1163236..1165036 | TCONS_00057032-exon-scaffold_284-1510915933:1163236..1165036 | Clytia hemisphaerica | exon |
| TCONS_00057032-exon-scaffold_284-1575043694:1163236..1165036 | TCONS_00057032-exon-scaffold_284-1575043694:1163236..1165036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1163236..1165036 . |
Blast
The following BLAST results are available for this feature:
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