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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056901 ID=TCONS_00056901|Name=TCONS_00056901|organism=Clytia hemisphaerica|type=transcript|length=432bp
cAGCAAAGATGAAGCTCGCAATCGTTTTAATGTTGTCATTCTGTTTGTTC
TTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATATTACGAGAAAAT
GGAAAACGACCCGGCTCGCTGTGTTTACAAGGGAGGTTTTTGCAATCCAT
TCGTTAGATGCTGTGCACAAAAACATCAAATGCTTTTTTGCATTGGTTTC
AGATGTCGAACAATTGgcaaaaaatttgtattttaaaccaagtattttaa
ttttctttaacgctagcattttcattttcatggaaGAGAAAATCGTATTA
TTGTATCTTATGAGAAAATATTTCCATCAGgtacatgattttttataaga
gctaATAAATGTTGGTTTGGATTCcttattttcagtgattttGAGGCGTA
CAGTTTAAGTGTTTAAATTGTTAACTTATTCG Run BLAST on NCBI transcript from alignment at scaffold_284:1274395..1282738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056901 ID=TCONS_00056901|Name=TCONS_00056901|organism=Clytia hemisphaerica|type=transcript|length=8344bp|location=Sequence derived from alignment at scaffold_284:1274395..1282738+ (Clytia hemisphaerica)
cAGCAAAGATGAAGCTCGCAATCGTTTTAATGTTGTCATTCTGTTTGTTC
TTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATATTTCGAGAAAAT
GGAAAACGACCCAACCCGCTGTGTTTACGAGGGAGGTTTTTGCCATCCAT
TCAGTAGATGTTGTGCACAAAAACATCAAGTGCTTATGTGCATTGGTTTC
AAGTGTAAAGCACCAATGAGGATAGTAAAGGGTTGGTTTGGCAAAAAATA
ATCTATTTGTGTTTTAAACCAAGTATTTTAATTTTCCTTAACGctagcat
tttcattttcatggaaGAGAAAATCGTAAAGACTAGAATTTATTTCCTAT
TTATTGTATCTTATGAGAAAGTATTTCCTTTTATGGCGTCCATCaggtac
atgatttttttatataagagctAATAAATTTTGGTTTGGACTcctatttt
tagtaattttgAGGCGTGTAAAGTGGGAGGGGTTTGttggggttcgaaat
accgtaaTACAGTCAAATGGCAGTTTAGTACAGTATGCTATAAACAAACA
ATgatataccattattttggtaataaaagagatgacaaaaaaaaaacaga
taaataactTTACCTTATCTCTATGAGAAGATATCTATGAGATGGACACa
aattgctaatatttgtagactaaatttgACTTCANGAACAAAAAAACGAT
AACGTAGGTTTTAAAGAGGTAAGGTTCACTCGACCATTTTACTCGACTTT
ATAATGTCGTCTAGCTGCTCTAATTTTGCCATAATTTATCAGAGACAGAT
CCGCATCGCAGGGTGTAAAGTAATAAACCTTGCCTTCTACGACTAAACAA
ATAAATGGACAAagtgaaaattaatttcttagTGAACACTACAGAAGGTT
CTTTCTCTGATGATTTTGTCGGAAATAAGCGATCGCCAACAGTGTGTTTG
AAACACGCTGACCTAGTTGTATCTTATGAGAAAGTATTTCCTTTTATGGC
GTCCATCAGGTACATGATTCTTTATATGAGAGCTAATAAATCTTGGTTTG
GACTcctatttttagtaattttgAGGCGTGTAAAGTGGGAGGGGTTTGtt
ggggttcgaaataccgttgtcccgtcaaaatttttgctgaatcccggaat
cccgaaaattaaaaaaaaatgataacacCATCACACCGGTTTTTAAAGGt
taaaataccggcataatggcAAAAAaaggctaaataccgtcacTGTCTTA
Ttttgaaataccgttttcccgtctcttttttcatcaaatcccgtaatacc
ctactaaaaagggccaatcccgcgACACTGTAAAAGTACGAACCCCCCTA
AAGTTTAAGtgtttaaattgttcttaacttattcttttATTGTCTTAAAA
TAGGCTGAAAATATGCATCATCCAAGTAGTATTTCCGAATTTTGGAAATC
GGACAAAacaattccttcggtatttcggaatgctgaaattgtttcggtat
cggaaatccatgaactTTTGCTTCGGAATTTTGGTATTAtgaagttttta
tccccctttttcatgagatgttctggagtttttataagtgCAAAATGGAT
GTTGATGATGTAAGAAACTTCTGAATTAAATTATaatggtaaatctattt
tataTGATTTGTGTTTTTAGTACATTGTATATTTCTgagtcactgcagta
atcaactGCAGTTGATCACTATTTTGAGAATTGAGATATAAGTTTTACAT
AAGTGATAAAGCGGGAAATAGCTCTTGAATTCCAAACTCGTGTAACTGAT
GGCATGTTCAAAATAGACATAAGTTTGGCAGAGAAAGCTTAAAGGCCTCA
Attatagtctagcaagctaaacgactaattcataccctgagtatcagagg
ttgagttttcaaagaacatgTCAACCTCTgtagaccaataatagaaattt
tatcgcgcatgtgtcaatctaatcactgtagaaagaatcttctatacagg
gtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagtt
ttatgtgcgtgttcacaaaattgtattttaagctctccctNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTTTCAAG
GGGTCCCGAATTCCGTCACTCCGtccaattttttgtcaaattccgTCATA
CCGTAcaaaaggaaactttttttcCGTCACCGAAGATTCCtttaaaattc
aagatttttgtcaaaaattccgcgaatttagaatattttttgctaattcc
gaaattccgcaagtgtttttgccaaattccgtttttccgcactaaaattg
tctaattttccgtctccgtcagagaacccaatttccgtaattccgtctaa
attttcgccaaattccgccactccgtccgaaaaaaggaccgattccgctc
ctccgcaaaccatgaacccccccctaataagcctgtgtgatggagaacgt
tcttatattttagcgataacacacacaaacttttctactcaatcgcatgt
tcaaactcgatactttaattagggNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNctatattaatgtctagcagattgtatcagtatgcatgt
ttactatttacgaattccccagaaacctccaagtgtaattgaaatgagtt
tctttcaaaagaaatcgtcTACATGATTCCTAAATGTATAatagtaatta
ctaaactattaattatggaaatataactttaatgaaataaaaataataca
cATATCTTTTTGTtacgattctctatcactgactcttttaaaaagcattg
atgacattttttagtTATGTTTTCAACGGCGGGAATAAAAACATTAACTT
TGAATTTAATCCAAGATCTTAGATTGTCGTTatcgttacttttctctgcg
ttgattgcgctgaatagaatctggattggtggGGACAGGTCGATTGGTGG
GGACAGGTCGATTTATGGTTtcggcctgtgcttttcacggtcaGATTTTA
GATGGTGTTTGTATTGCTTGTAAAGCAGTCGTTTCTGATTGACGTGTTCA
TGTGTTAAGCATCCAAACCATAAGCCAGTCGCCTGAAAAAAAGTGCCAAT
AAGATTAATACTTTCTTGATGAGTAAACATAATTACTTATCTACAATTCT
AATCTTTTTCAACGTAAGATTTTCGGCCGTAATCAAGGGCTTCCAGAAAG
AGGAGGGTATTACTCTTTCTCCCTGGCTTGCTCGACCTCACTGGCCTGAT
CTGTCTTTTTCAGTTATGGAGCATCAAGTATCAAGGACCATtttggaatc
tttggtatgaccggTTAaacctagacgatgctatcaGCCGTTTGGGGAAT
AGAAAACGAGGGAAATATAGGCGGTGTGTACAGCCGTCAGGGNgaaaata
ggttgttccagcgatttttaaatagtttcggcttcaaaaaccaattttat
tgaaaattgaattatgcttgatggtgggcattgctattgataatgttttt
gaatgaaaaaacaacgaattaAGAGGAagaagtccaatgaaaatccagaa
aaacggcaatttccagaatgtttccggcattttcggctggaaaaaaatta
ttctcaaaaatcgaactcggccatgttttgggcattgttagtacgcatct
ttgagcaaaaaatcagaaaaaactaatgataaaatctcgagaaaatgcca
aaaaacagtttttccggcatatttccggcattNTGCGAGgagaacaattt
aaaaaatcagcCAGGAAATACAGCGTTTCGCGAAAATgtataacgcaata
aattcatcattgattgttgatgggggagagggaaaagttgtagggaaaaa
ataaatagaaagttctggtcgcaaaaatcagttttattgacaattgaatc
atgcttgatggtgagcattgttgtcaataatgtttttgtgtaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNaaaaaatgttttttgaaaatcgggctccgtcacatttt
aggtattgtcattttgcatcagtgtgcaaaatttcataaaaatatctaaa
gtacagctcgagaaattcaagaaatactgtctttccggcgaaaataggtt
gttccggcaatttttaaatagttccggcttcaaaaatcaatttcattgaa
aattgaattatgcttgatggtggacattgctaataataatgtttttgaat
gaaaaaacaaccagttataaggaaaaagtccaatgaaaatctagaaaaac
tgTGATTTCCGGGCAAActggcattttccgccggaaaaaaattgttctca
aaaatcagacttggccatgttttgggcattgttaatacgcacctttgagc
aaaaaaaacaaaaaaactaattataaaatctcgagaaaagctggtaacag
acgaacggacggacggatggacggacgaacagacaacggttaattcatag
gacctccaccggtaggtccaaaaagcgtTCAAATTGGGAACAAACTGTCG
TCACTGTAAACACAAACCTTACTGTTACCTCCGTTTTCCATTTTGTCTTT
AATTTAGGGGCTCTATATTAAATCATTAAAGTTGGATTATTGCTTGATCT
TGTACTACCCTACACAAAATGTTAAAACGTTACCCATCTAATCTTCTAAG
GTCcataacgttcaaataacgttgtGTAAAAGACGTTTACTCAACGGGTC
ATTACCAAACGTATTGGTCATCACCAATAAAAATAGCTTTTGTCAAGACC
TGAAAAGCTCTCGttaatatatttattttaattgaatagaaaatcaaatc
aacaaaagtgaaaagtaaaattttcctcATTTTAACCCGTTAGGTTCTGC
GGTctttttttctaatattttaagAAGTTcgcgctagttcaaactttaaa
ggcttatatctccggatctagaaggagttagctGCGCCGATCTGACTGAA
TGACAGAAAGAtacccagtggtaaaacttcaaatcaattcgtagaggaca
gaatcaagtgaagcggggccaaatttggaggtttttgGATTACCCATTGa
acaaaaatggtcaaaaaacggtcaatatctcaaaaaagttttttctagcc
atttttatgactttttggcttaaaatctctttggaaagactcacttttaa
TCTTTTTTGCTTTACCATGAAGCACAATACCATTCCTACGAGTTAAatca
aaaatgacgatttctaactcaaaccgATATAcccgacattggcacttaaa
gggaaATCATTATTTAGGATCGCCTACATTTTATcccaacattttaaaaa
tatcaaatttcaaaagaagcCACAATCAATTAAGTTTATAAGCTCTTAAA
ATAAAGTTcaagaaaattataattttttgtgaTAGTTTGTATAATAGGTC
ACTAAAAAATAATCTGTTAATAAACATCTTGTTCTCATTTGATAAAAAAC
CATTAACTTTTTGGGGTATTTGTTCCGGAAGGGTTTGCATCGCCGGCAAT
GCATTGAACATTTTAATGCAACAATTCAAATTGTTTGTTGGACGAAATAT
TGGATGAAAGTCACGtggaaaaatttcgaaaaagttgcatgaaaagtcat
ttgcacAAAACGTTAAACATTTTCATCCGACATGATTACGCAAATGCGTC
CAAAATTGAAACCAACgtaaaattgacgtcaatttcataaaaatgttgga
tgaaatgtttggcGGTGATCAaaacttcatccaacatttcttattaaaaa
atgttggatcCAATGTTGGATGCATTTGCGCCGTACTTATATATGCTCTA
TGGTGGGGCTTTCGAGGATACAAAATATCATAAgggagcggtcattaagt
atagCATATACCGGGGTGGAAGGGATTTTTTTGGCAGACTTCTTATTTTC
ATATCCTACCAAAAGTtctcaaataaatttcataccCTACCAAAAATTAG
ATGAAAATTTTCGTACCCTACCCCTTACCAGATGGCAGCTTTATGACACT
TTAAAATTTCTCAGTATTCAGGGTTTGCAAGAATAAAATGGAgttttaaa
attgacaaaattgaaatttttgttaaaataagattcagctaaaaatattt
tcgtacCCTTCCCAAAGCCCTCAAGTTTTTTTCATACCCTACCCAAAAGA
GGGGAAAAAATTCATACCCTACCCAAATCCCTTCCACCCGGGTATATGtt
atacttaatgaccgctcccTAATACCGGTATAATATTTTCACAACATACC
AGCACACCGGccaaaaatttctaaatacCGTTCAAGAATGTTCAGACGCG
TACAAGAACACCGCAAGTTCAGCTTATCAATACTGGAATACCAGTCATTT
TTTCGTTTAATACTGGACTATGTTTTCTTTAGCCTCCTGATGAAAAGTGG
GTTAAGACTGCAATGGATATTGATTTCATTCTGCTTAATACTCAGCAAAT
AATTAAACGAATAATTTTTGGTTCAGaattcgaaaataaaaaaaatcatt
atacCATTAAAAGAATGACAATACGACTAGGTTTGGTTACGACACGGCCA
CGTCTTTCACCACGTTGTTGATCTTAATACCTTGGAAACTTATACTACCA
CGAGTTTATGGTTTACCAATGCCACGAGTCCTTTATTTGTATAACTAATA
TGTTTGCTGTATTTTCATTGGTCCAGAGTTATGTCAGCTCCATTTGATGA
ACACATAAATTTAAAGGTCTAAACACCATTTTACAATCACGACTTTAATC
AAGTTCAAGATTACTTctcaagaagaaaattaattgtTTTTCAGCTGCCG
ATCTAAGGtaaatttctaatatttttttctaattttgatatgtGATTGAT
GTATGATTTACTAATGCTAATTAAGTCTTTGCACATTAGACGGCTTCAAC
GTTGtgatccggggggggggggactagggcaagatgggttacggggaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccccg
gggttgtCTACAGACGTCCgtagaattaagaaaatttatacatctactta
ttttgtagattttctagTGACACTGGCctgacaaatttcataaagaacta
CAAACTTCGCCAAGAAAGTTTATGTTTTCgataaatatattttctttata
cttgcgaaattaaatgtcgtgaatttcgcaaTTTTTTAACCCTCGTCTCA
TCCCGCAAAGATTTTTACGACTTAATCATATTAAGGTGGACTATATTATA
TGTTTACTAAGGTAAATTATTCACCGATGACGAATTCTACGATGATGGTT
CacccaaaaaaatacaaaagatgAGTGTATTGTTAAagctaatttttttc
tcttttcttcacAGGAAAAGATGAAGCTCGCAATCGTTTTGATGTTGACA
TTCTGTTTGTTCTTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATA
TTACGAGAAAATGGAAAACGACCCGGCTCGCTGTGTTTACAAGGGAGGTT
TTTGCAATCCATTCGTTAGATGCTGTGCACAAAAACATCAAATGCTTTTT
TGCATTGGTTTCAGATGTCGAACAATTGgcaaaaaatttgtattttaaac
caagtattttaattttctttaacgctagcattttcattttcatggaaGAG
AAAATCGTATTATTGTATCTTATGAGAAAATATTTCCATCAGgtacatga
ttttttataagagctaATAAATGTTGGTTTGGATTCcttattttcagtga
ttttGAGGCGTACAGTTTAAGTGTTTAAATTGTTAACTTATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056901-exon-scaffold_284-1491911889:1274395..1274431 | TCONS_00056901-exon-scaffold_284-1491911889:1274395..1274431 | Clytia hemisphaerica | exon |
| TCONS_00056901-exon-scaffold_284-1510915933:1274395..1274431 | TCONS_00056901-exon-scaffold_284-1510915933:1274395..1274431 | Clytia hemisphaerica | exon |
| TCONS_00056901-exon-scaffold_284-1575043694:1274395..1274431 | TCONS_00056901-exon-scaffold_284-1575043694:1274395..1274431 | Clytia hemisphaerica | exon |
| TCONS_00056901-exon-scaffold_284-1491911889:1282344..1282738 | TCONS_00056901-exon-scaffold_284-1491911889:1282344..1282738 | Clytia hemisphaerica | exon |
| TCONS_00056901-exon-scaffold_284-1510915933:1282344..1282738 | TCONS_00056901-exon-scaffold_284-1510915933:1282344..1282738 | Clytia hemisphaerica | exon |
| TCONS_00056901-exon-scaffold_284-1575043694:1282344..1282738 | TCONS_00056901-exon-scaffold_284-1575043694:1282344..1282738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1274395..1282738 + |
Blast
The following BLAST results are available for this feature:
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