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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057033 ID=TCONS_00057033|Name=TCONS_00057033|organism=Clytia hemisphaerica|type=transcript|length=1093bp
GATTactaaaaatttaaataaataaacgaaaatgGAAGTTGGAAGATTGC
TGATAAATGAAGCGTTACCTATCCAACAATCTCATCACCAACAAAAGCCA
NAACGAAAATGGAAGTTGGAAAATTGCTGATAAATGAAGCGTTACCTATC
CAACAATCTCATCACCAACAAAAGCCACCAGTGAGCAATCCTGTCATCAC
TTTTTCATTGGAAATAAGAATCCAAGAATTCTTGGCTGGACTTTGTAATT
TATCTCTTCAAAACCTTTTCAACCCTTTGTTTATGGGAGACCAGCTTgga
aatttgttttcatttgttcCCGTAAATACTGTTTACTCATCCAGCGCTGT
TAATCGATTCCCACAAACATCACATCATCAAATCACATTTTCAGTTGAGA
TCAAAACACGTGGCGTTTTGGTGGGTACCTGTAATATATCTTTCGCAAAT
ATATACAAACCAATGGAAATACACGATGGAAGAGgtaatatgtttttatt
tttccctaaTAAGGAAATTTACAAAAAGACATTCCTCTCGATAGACGATA
TTGCTAAGTATCTAAGATATCAAGTTCCTTATGGTTCTTTCGGTACTGGT
TACGATTTCAAAGGAAACAATCAGCCTCTTGCAACCATTGATGAGCATTA
TTTGAGAGAAAGCTACCTCGAATGTAAAGAATGTGGAAAATGGTTTTCAT
TGCAAAATCGTTTTGATAAACACATGGCAACCGATCACGTGGGTGTAATG
ACGTACCATTGTCAAAATTGTGGAAAAGGTTTCACTACAAGTATTGGTCT
CAAAAACCACAATAAGCCAAGACAAAGGAAATCCATGTTTAGATGTGAGG
TATGCAgtaaaaaattcaagagaaaatgtACCTTGACCAGACATTAACTT
CTTGATCACTAATAACATACCTTAAAGCAACTTTGATAAACTtgacaaaa
atgataaaaaattttcaagttttgtatttcataattatattacattttaa
atcttttcttgatattttgttcTTGTATTTATTTTCTACTCACGAAAAGT
ATTTTATTTAGTTATATACAGTTGTAGATTCCAAAATGTTGCC Run BLAST on NCBI protein sequence of TCONS_00057033-protein >TCONS_00057033-protein ID=TCONS_00057033-protein|Name=TCONS_00057033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MEVGKLLINEALPIQQSHHQQKPPVSNPVITFSLEIRIQEFLAGLCNLSL
QNLFNPLFMGDQLGNLFSFVPVNTVYSSSAVNRFPQTSHHQITFSVEIKT
RGVLVGTCNISFANIYKPMEIHDGRGNMFLFFPNKEIYKKTFLSIDDIAK
YLRYQVPYGSFGTGYDFKGNNQPLATIDEHYLRESYLECKECGKWFSLQN
RFDKHMATDHVGVMTYHCQNCGKGFTTSIGLKNHNKPRQRKSMFRCEVCS
KKFKRKCTLTRH Run BLAST on NCBI transcript from alignment at scaffold_284:1286607..1287699 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057033 ID=TCONS_00057033|Name=TCONS_00057033|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at scaffold_284:1286607..1287699 (Clytia hemisphaerica)
GGCAACATTTTGGAATCTACAACTGTATATAACTAAATAAAATACTTTTC
GTGAGTAGAAAATAAATACAAgaacaaaatatcaagaaaagatttaaaat
gtaatataattatgaaatacaaaacttgaaaattttttatcatttttgtc
aAGTTTATCAAAGTTGCTTTAAGGTATGTTATTAGTGATCAAGAAGTTAA
TGTCTGGTCAAGGTacattttctcttgaattttttacTGCATACCTCACA
TCTAAACATGGATTTCCTTTGTCTTGGCTTATTGTGGTTTTTGAGACCAA
TACTTGTAGTGAAACCTTTTCCACAATTTTGACAATGGTACGTCATTACA
CCCACGTGATCGGTTGCCATGTGTTTATCAAAACGATTTTGCAATGAAAA
CCATTTTCCACATTCTTTACATTCGAGGTAGCTTTCTCTCAAATAATGCT
CATCAATGGTTGCAAGAGGCTGATTGTTTCCTTTGAAATCGTAACCAGTA
CCGAAAGAACCATAAGGAACTTGATATCTTAGATACTTAGCAATATCGTC
TATCGAGAGGAATGTCTTTTTGTAAATTTCCTTAttagggaaaaataaaa
acatattacCTCTTCCATCGTGTATTTCCATTGGTTTGTATATATTTGCG
AAAGATATATTACAGGTACCCACCAAAACGCCACGTGTTTTGATCTCAAC
TGAAAATGTGATTTGATGATGTGATGTTTGTGGGAATCGATTAACAGCGC
TGGATGAGTAAACAGTATTTACGGgaacaaatgaaaacaaatttccAAGC
TGGTCTCCCATAAACAAAGGGTTGAAAAGGTTTTGAAGAGATAAATTACA
AAGTCCAGCCAAGAATTCTTGGATTCTTATTTCCAATGAAAAAGTGATGA
CAGGATTGCTCACTGGTGGCTTTTGTTGGTGATGAGATTGTTGGATAGGT
AACGCTTCATTTATCAGCAATTTTCCAACTTCCATTTTCGTTNTGGCTTT
TGTTGGTGATGAGATTGTTGGATAGGTAACGCTTCATTTATCAGCAATCT
TCCAACTTCcattttcgtttatttatttaaatttttagtAATC Coding sequence (CDS) from alignment at scaffold_284:1286607..1287699 >TCONS_00057033 ID=TCONS_00057033|Name=TCONS_00057033|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_284:1286607..1287699 (Clytia hemisphaerica)
TTAATGTCTGGTCAAGGTacattttctcttgaattttttacTGCATACCT
CACATCTAAACATGGATTTCCTTTGTCTTGGCTTATTGTGGTTTTTGAGA
CCAATACTTGTAGTGAAACCTTTTCCACAATTTTGACAATGGTACGTCAT
TACACCCACGTGATCGGTTGCCATGTGTTTATCAAAACGATTTTGCAATG
AAAACCATTTTCCACATTCTTTACATTCGAGGTAGCTTTCTCTCAAATAA
TGCTCATCAATGGTTGCAAGAGGCTGATTGTTTCCTTTGAAATCGTAACC
AGTACCGAAAGAACCATAAGGAACTTGATATCTTAGATACTTAGCAATAT
CGTCTATCGAGAGGAATGTCTTTTTGTAAATTTCCTTAttagggaaaaat
aaaaacatattacCTCTTCCATCGTGTATTTCCATTGGTTTGTATATATT
TGCGAAAGATATATTACAGGTACCCACCAAAACGCCACGTGTTTTGATCT
CAACTGAAAATGTGATTTGATGATGTGATGTTTGTGGGAATCGATTAACA
GCGCTGGATGAGTAAACAGTATTTACGGgaacaaatgaaaacaaatttcc
AAGCTGGTCTCCCATAAACAAAGGGTTGAAAAGGTTTTGAAGAGATAAAT
TACAAAGTCCAGCCAAGAATTCTTGGATTCTTATTTCCAATGAAAAAGTG
ATGACAGGATTGCTCACTGGTGGCTTTTGTTGGTGATGAGATTGTTGGAT
AGGTAACGCTTCATTTATCAGCAATTTTCCAACTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057033-exon-scaffold_284-1491911889:1286607..1287699 | TCONS_00057033-exon-scaffold_284-1491911889:1286607..1287699 | Clytia hemisphaerica | exon |
| TCONS_00057033-exon-scaffold_284-1510915933:1286607..1287699 | TCONS_00057033-exon-scaffold_284-1510915933:1286607..1287699 | Clytia hemisphaerica | exon |
| TCONS_00057033-exon-scaffold_284-1575043694:1286607..1287699 | TCONS_00057033-exon-scaffold_284-1575043694:1286607..1287699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1286607..1287699 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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