|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057034 ID=TCONS_00057034|Name=TCONS_00057034|organism=Clytia hemisphaerica|type=transcript|length=1466bp
AACGAGGTTTTACGTTCTATTGCTTCTTTTATCTTCTAATTTTAGAACgc
ttaaaggaaaaaaaaggggaaaaaatattgaaaaacatgAGCCATGAACA
TCTACCACCTGGACACAAACATGCTGACCATCCTCCAATTAAACTATCCA
TTGAGATCAAAATAGATGAACATATGGTCGGCACCTGTAATATATTCCTC
CAAAATATATACAAACCTTTAGAAATTATTGATGGTAATGGCAACGTATT
TTCATTTATACCGAGTAAAAAGATTTATGGAACAACCTTCATATCTATCG
ATGAGGACTTGAttgttcaaaaaatttcaaatgaagTACAAAAGTTAAAT
ACAATTCAACATGATATTAGAGAAACAATGGATGATTTATTAGATTCGGT
TGAGGGTCGCTTGGGCCAAGATGTGGATCATGAGACTAGTTTAAAACACT
TGGTTTTAGAAAATAATACCCAGCATGAATTGGCGGACTCATTTGGTGAA
AGCAGAGGCTCAACCTCAACTAAAAAGGTAACGACACAggggatgaaaaa
ctttaatgtaAACAAGCGGGAGCCAATTTTAGCGGGAGCCAATTCGAGTA
ACCAAAAGGGTATGATGATTGGTACCATTAATGAAATTAATAAAGACAGT
ACAGTTCATCCTTTACCATCACAGAAATACAATTGGTCAGACTGGTTCGA
GTGCAAGGTATGTGGTGAGACCTTTACACGAACAAGTCATTATGAAAAAC
ATGTGAGAGTCAATCATATTGGTGTGAAACCTTTTCACTGCGATGCATGT
GGTAAAGGTTTTTCACGCAAAGATGATATGAAAAAGCATTATAACAGCAG
ACATTTGGGAATTAAACAATTTGTGTGCAAGGTTTGTGGTGAGGGATTTG
TCAAAAGGAATCGTATGGAGAATCACCATTACGAAGCACACGTTTATAAT
AAAACTAACAATTAACTATGGCTAGGGGTGCGCTACAGTGCCTGTGTTGC
CCGGAGGAGAAAACATTGATGAGATAAAGCTTAGTAAGTGAGAGCAGGGT
TTTAAATCGAAAAACAAGAAGAACATGAAATTCCGGTCGCTCGGTCCAGG
TCAGATTTAGGTTCAGGTCCACTACGTGAAGCAACATGAACCTGGTCTTC
ATAACAtgaatttagagaaaaaatattttttcaaattatcaaatATGTAA
ATTGTTGTTATTCTATTAGTTATAAATTGTTccattagatttatttttgt
tgatttcataAAGTTAttctttccaaattttgaaatctagttAATGCGAT
AcatgttttagcttttttttcaaatctcttAGGCTAGAATTCTCTGTCTT
TCAAAGCTTTTCTGGGCAGCGCATTAAATGGTTTCAGTGGATCCAATGTG
TCCAAAGAAAAGTTTCGATAGGAGACAAGGATGTTGAATAGATTAAAAAA
GGCGATTACCCAAATA Run BLAST on NCBI protein sequence of TCONS_00057034-protein >TCONS_00057034-protein ID=TCONS_00057034-protein|Name=TCONS_00057034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
RGFTFYCFFYLLILERLKEKKGEKILKNMSHEHLPPGHKHADHPPIKLSI
EIKIDEHMVGTCNIFLQNIYKPLEIIDGNGNVFSFIPSKKIYGTTFISID
EDLIVQKISNEVQKLNTIQHDIRETMDDLLDSVEGRLGQDVDHETSLKHL
VLENNTQHELADSFGESRGSTSTKKVTTQGMKNFNVNKREPILAGANSSN
QKGMMIGTINEINKDSTVHPLPSQKYNWSDWFECKVCGETFTRTSHYEKH
VRVNHIGVKPFHCDACGKGFSRKDDMKKHYNSRHLGIKQFVCKVCGEGFV
KRNRMENHHYEAHVYNKTNN Run BLAST on NCBI transcript from alignment at scaffold_284:1288573..1290038 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057034 ID=TCONS_00057034|Name=TCONS_00057034|organism=Clytia hemisphaerica|type=transcript|length=1466bp|location=Sequence derived from alignment at scaffold_284:1288573..1290038 (Clytia hemisphaerica)
TATTTGGGTAATCGCCTTTTTTAATCTATTCAACATCCTTGTCTCCTATC
GAAACTTTTCTTTGGACACATTGGATCCACTGAAACCATTTAATGCGCTG
CCCAGAAAAGCTTTGAAAGACAGAGAATTCTAGCCTaagagatttgaaaa
aaaagctaaaacatgTATCGCATTaactagatttcaaaatttggaaagaa
TAACTTtatgaaatcaacaaaaataaatctaatggAACAATTTATAACTA
ATAGAATAACAACAATTTACATatttgataatttgaaaaaatattttttc
tctaaattcaTGTTATGAAGACCAGGTTCATGTTGCTTCACGTAGTGGAC
CTGAACCTAAATCTGACCTGGACCGAGCGACCGGAATTTCATGTTCTTCT
TGTTTTTCGATTTAAAACCCTGCTCTCACTTACTAAGCTTTATCTCATCA
ATGTTTTCTCCTCCGGGCAACACAGGCACTGTAGCGCACCCCTAGCCATA
GTTAATTGTTAGTTTTATTATAAACGTGTGCTTCGTAATGGTGATTCTCC
ATACGATTCCTTTTGACAAATCCCTCACCACAAACCTTGCACACAAATTG
TTTAATTCCCAAATGTCTGCTGTTATAATGCTTTTTCATATCATCTTTGC
GTGAAAAACCTTTACCACATGCATCGCAGTGAAAAGGTTTCACACCAATA
TGATTGACTCTCACATGTTTTTCATAATGACTTGTTCGTGTAAAGGTCTC
ACCACATACCTTGCACTCGAACCAGTCTGACCAATTGTATTTCTGTGATG
GTAAAGGATGAACTGTACTGTCTTTATTAATTTCATTAATGGTACCAATC
ATCATACCCTTTTGGTTACTCGAATTGGCTCCCGCTAAAATTGGCTCCCG
CTTGTTtacattaaagtttttcatccccTGTGTCGTTACCTTTTTAGTTG
AGGTTGAGCCTCTGCTTTCACCAAATGAGTCCGCCAATTCATGCTGGGTA
TTATTTTCTAAAACCAAGTGTTTTAAACTAGTCTCATGATCCACATCTTG
GCCCAAGCGACCCTCAACCGAATCTAATAAATCATCCATTGTTTCTCTAA
TATCATGTTGAATTGTATTTAACTTTTGTActtcatttgaaattttttga
acaaTCAAGTCCTCATCGATAGATATGAAGGTTGTTCCATAAATCTTTTT
ACTCGGTATAAATGAAAATACGTTGCCATTACCATCAATAATTTCTAAAG
GTTTGTATATATTTTGGAGGAATATATTACAGGTGCCGACCATATGTTCA
TCTATTTTGATCTCAATGGATAGTTTAATTGGAGGATGGTCAGCATGTTT
GTGTCCAGGTGGTAGATGTTCATGGCTcatgtttttcaatattttttccc
cttttttttcctttaagcGTTCTAAAATTAGAAGATAAAAGAAGCAATAG
AACGTAAAACCTCGTT Coding sequence (CDS) from alignment at scaffold_284:1288573..1290038 >TCONS_00057034 ID=TCONS_00057034|Name=TCONS_00057034|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_284:1288573..1290038 (Clytia hemisphaerica)
TTAATTGTTAGTTTTATTATAAACGTGTGCTTCGTAATGGTGATTCTCCA
TACGATTCCTTTTGACAAATCCCTCACCACAAACCTTGCACACAAATTGT
TTAATTCCCAAATGTCTGCTGTTATAATGCTTTTTCATATCATCTTTGCG
TGAAAAACCTTTACCACATGCATCGCAGTGAAAAGGTTTCACACCAATAT
GATTGACTCTCACATGTTTTTCATAATGACTTGTTCGTGTAAAGGTCTCA
CCACATACCTTGCACTCGAACCAGTCTGACCAATTGTATTTCTGTGATGG
TAAAGGATGAACTGTACTGTCTTTATTAATTTCATTAATGGTACCAATCA
TCATACCCTTTTGGTTACTCGAATTGGCTCCCGCTAAAATTGGCTCCCGC
TTGTTtacattaaagtttttcatccccTGTGTCGTTACCTTTTTAGTTGA
GGTTGAGCCTCTGCTTTCACCAAATGAGTCCGCCAATTCATGCTGGGTAT
TATTTTCTAAAACCAAGTGTTTTAAACTAGTCTCATGATCCACATCTTGG
CCCAAGCGACCCTCAACCGAATCTAATAAATCATCCATTGTTTCTCTAAT
ATCATGTTGAATTGTATTTAACTTTTGTActtcatttgaaattttttgaa
caaTCAAGTCCTCATCGATAGATATGAAGGTTGTTCCATAAATCTTTTTA
CTCGGTATAAATGAAAATACGTTGCCATTACCATCAATAATTTCTAAAGG
TTTGTATATATTTTGGAGGAATATATTACAGGTGCCGACCATATGTTCAT
CTATTTTGATCTCAATGGATAGTTTAATTGGAGGATGGTCAGCATGTTTG
TGTCCAGGTGGTAGATGTTCATGGCTcatgtttttcaatattttttcccc
ttttttttcctttaagcGTTCTAAAATTAGAAGATAAAAGAAGCAATAGA
ACGTAAAACCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057034-exon-scaffold_284-1491911889:1288573..1290038 | TCONS_00057034-exon-scaffold_284-1491911889:1288573..1290038 | Clytia hemisphaerica | exon |
| TCONS_00057034-exon-scaffold_284-1510915933:1288573..1290038 | TCONS_00057034-exon-scaffold_284-1510915933:1288573..1290038 | Clytia hemisphaerica | exon |
| TCONS_00057034-exon-scaffold_284-1575043694:1288573..1290038 | TCONS_00057034-exon-scaffold_284-1575043694:1288573..1290038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1288573..1290038 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
