TCONS_00057036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057036
Unique NameTCONS_00057036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057036 ID=TCONS_00057036|Name=TCONS_00057036|organism=Clytia hemisphaerica|type=transcript|length=805bp
TGATGATGTTAATTATTACTGATCGATTTTTGGAAGTCTACTTCAATATC
AGGTTAGTGAAGAATACAGAATGTTTATTCTAACTATTCtatcgaaattc
aaatttcaggTTGATTGAAGAAATGACATgtgaaaagtatttttcaagTA
ATGACATTTCCCTAAACACGACTCAGGAAGCCCTTAAGTCAGGAGGTTCC
AAAGTACCTCTGATgtaccaaaaataaaataaagtttgtaatgtttttaa
aagacattaaatttttcatctttcttaGGTATTTATTGATCTGGTCCAAG
AAAAAGACTTATATTTCAATATTGGTCGTCTTCATTCTTTCATTCATTTT
GGTGATTATTTACTTCTCAACATGCAACACCTACAAACAAGTACGATACT
ACAACAGTGTTTTCTTATGGCCCATCGCTGAAATCATTGTTATACTTTAT
TCAGTCCCAGTCTATTTCCACATACTGaagaaaatgaatcaaaatcgaaa
aattgataaatgtaTCAAGCTACAATTGAGTAATGTTTCCTCTGGAGGAT
CTGCACCGCAGAAGCGCCAATCAGCAAGAATTTTTAAAGGATTAGTACAT
TTACCGTTTCTGTTAGTAACaacgttcttaacattttggttgATTCCTGA
TCAAATTATATTCTTTACTAAGCTTTCCAGTAAAAAGATTTCGACCGAAG
TTTGGTTTGTTATGGGAATTTCATTTGCTGCTGGATTTATCACAGATCCT
GTGTTATATATTTTGCTCTCAaaggaatttcaaaaagtcctcaaaacatt
tttca
Run BLAST on NCBI

protein sequence of TCONS_00057036-protein

>TCONS_00057036-protein ID=TCONS_00057036-protein|Name=TCONS_00057036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MFLKDIKFFIFLRYLLIWSKKKTYISILVVFILSFILVIIYFSTCNTYKQ
VRYYNSVFLWPIAEIIVILYSVPVYFHILKKMNQNRKIDKCIKLQLSNVS
SGGSAPQKRQSARIFKGLVHLPFLLVTTFLTFWLIPDQIIFFTKLSSKKI
STEVWFVMGISFAAGFITDPVLYILLSKEFQKVLKTFF
Run BLAST on NCBI

transcript from alignment at scaffold_284:1337226..1338030

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057036 ID=TCONS_00057036|Name=TCONS_00057036|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at scaffold_284:1337226..1338030 (Clytia hemisphaerica)
tgaaaaatgttttgaggactttttgaaattccttTGAGAGCAAAATATAT
AACACAGGATCTGTGATAAATCCAGCAGCAAATGAAATTCCCATAACAAA
CCAAACTTCGGTCGAAATCTTTTTACTGGAAAGCTTAGTAAAGAATATAA
TTTGATCAGGAATcaaccaaaatgttaagaacgttGTTACTAACAGAAAC
GGTAAATGTACTAATCCTTTAAAAATTCTTGCTGATTGGCGCTTCTGCGG
TGCAGATCCTCCAGAGGAAACATTACTCAATTGTAGCTTGAtacatttat
caatttttcgattttgattcattttcttCAGTATGTGGAAATAGACTGGG
ACTGAATAAAGTATAACAATGATTTCAGCGATGGGCCATAAGAAAACACT
GTTGTAGTATCGTACTTGTTTGTAGGTGTTGCATGTTGAGAAGTAAATAA
TCACCAAAATGAATGAAAGAATGAAGACGACCAATATTGAAATATAAGTC
TTTTTCTTGGACCAGATCAATAAATACCtaagaaagatgaaaaatttaat
gtcttttaaaaacattacaaactttattttatttttggtacATCAGAGGT
ACTTTGGAACCTCCTGACTTAAGGGCTTCCTGAGTCGTGTTTAGGGAAAT
GTCATTActtgaaaaatacttttcacATGTCATTTCTTCAATCAAcctga
aatttgaatttcgataGAATAGTTAGAATAAACATTCTGTATTCTTCACT
AACCTGATATTGAAGTAGACTTCCAAAAATCGATCAGTAATAATTAACAT
CATCA

Coding sequence (CDS) from alignment at scaffold_284:1337226..1338030

>TCONS_00057036 ID=TCONS_00057036|Name=TCONS_00057036|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_284:1337226..1338030 (Clytia hemisphaerica)
gaaaaatgttttgaggactttttgaaattccttTGAGAGCAAAATATATA
ACACAGGATCTGTGATAAATCCAGCAGCAAATGAAATTCCCATAACAAAC
CAAACTTCGGTCGAAATCTTTTTACTGGAAAGCTTAGTAAAGAATATAAT
TTGATCAGGAATcaaccaaaatgttaagaacgttGTTACTAACAGAAACG
GTAAATGTACTAATCCTTTAAAAATTCTTGCTGATTGGCGCTTCTGCGGT
GCAGATCCTCCAGAGGAAACATTACTCAATTGTAGCTTGAtacatttatc
aatttttcgattttgattcattttcttCAGTATGTGGAAATAGACTGGGA
CTGAATAAAGTATAACAATGATTTCAGCGATGGGCCATAAGAAAACACTG
TTGTAGTATCGTACTTGTTTGTAGGTGTTGCATGTTGAGAAGTAAATAAT
CACCAAAATGAATGAAAGAATGAAGACGACCAATATTGAAATATAAGTCT
TTTTCTTGGACCAGATCAATAAATACCtaagaaagatgaaaaatttaatg
tcttttaaaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035931XLOC_035931Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057036-proteinTCONS_00057036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057036-exon-scaffold_284-1491911889:1337226..1338030TCONS_00057036-exon-scaffold_284-1491911889:1337226..1338030Clytia hemisphaericaexon
TCONS_00057036-exon-scaffold_284-1510915933:1337226..1338030TCONS_00057036-exon-scaffold_284-1510915933:1337226..1338030Clytia hemisphaericaexon
TCONS_00057036-exon-scaffold_284-1575043694:1337226..1338030TCONS_00057036-exon-scaffold_284-1575043694:1337226..1338030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1337226..1338030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.131	1.50924	0.808786	1.71442	1.44494	0.76121	1.22449	1.28965	0.802588	0.932002	0.301541	0.713597	0.435481	0.534478	0.30421	0.761748	0.71498	0.641228	1.39211	0.927021	1.03596	1.01061	1.22853	1.05486	0.894752	0.912623	1.14272	0.958207	0.792836	1.21166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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