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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056974 ID=TCONS_00056974|Name=TCONS_00056974|organism=Clytia hemisphaerica|type=transcript|length=2379bp
GTTTTGTAACTGCCACAAATATGTATTtatttttgtcaagatattTTCGA
CGCTAATATTCTGTCTACAAGTGCAAGGTAATGTTGACGCATTGGAGAAA
GTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGTACCTACC
AAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTACGGATCAT
GGAAATATGTTGAATCTCATCAACAGATCTTCTTCAATCAGAATCCTAAA
CCGTCTATCAATCTCATCGACCTGATTGTGTTTTTTGACCAATCATTTGA
CGAACAGATACCAGTTGATTGCCAAATTTTCCGTTACCATGGAAAAGAGG
CTACTCGTCACCAACTCTTACAAAACGACGCTACCTTGAATTCATTCGTc
gataaaaacaacaacaaagatGCTTCCGAATTTCGTCTTCAACTTGATCA
GCTGAAGAATACAAATCATACGAAAACACGGATTTCCGAAGATGAAATCA
TGTTTCGGTCAGCTTGTTGGAGAATACCTCAATCGAACAATACGTTCAAA
GATGGATTCTCTTCATTGGATAATCTCTTACCGTTTCTTAGAGAAGGTAT
CGACGAAATGTTTGAGGAATATCAATATATTCTCAATGTAGACACTGATT
CGATACTGACACCAGGGCTATGGACCCTCAATCTTAATCAAGTGGTCCTC
GCATCTGGTGTTCAACAAGAATGCCCTGCAGATCGTAAATTATTAACCTT
ACAAGCTGCAACGAAAATTGGTTTAGAGTTTCCCCTAGGTAGACCTTGGA
caacattttcaatatttggtGAAACCAATATCATCCTGCCATTTATGTTT
GAGGTTTACCGACTTTCTGTTTTCCTTATGCATGATGACTTGAATGAATG
GAATGCAAAACACGAAGAACAATCACATAAACAGTTGCAAATAGCTAAAG
ACCTTGTAATATATCAAGCAGCAAAGATGTTACAGATTGAAAATAAAGGA
AGGTTTCGCATTCTAGATTCATTGCCGTGTTCCAGAAGCCATCAAAAAGG
TACACGAAGTGTTCTGAGCATTTCTGTAAAGAAGGACCATAAATGTCGTT
TCGATAAAAGTCAATTCTTTAACCTTCTCGCGAATCTTCAAACGATGACC
CCGGgagagaaaaaagattttttaagccATGCTAAAGAAGAATGGAATCA
CGAGCAAGCCTCAAAACTGAATCTTGAAAACTATGCCAAATTTATCGCGT
ATAAGTATGCAGCGATTCATTTTAGTgagatctttaaattctgaTTGCAG
TCTCTGATCATCGTCGAAATTTTCCTATTCCCAAGTtaagcaatattttt
ttaactcaaaaatATTCTGACGATAACATAATGTGTCATTTTTGCGCCAG
TATGGTAAGTGGCCTAGCTACAACTTGCACTTTTTTTGCCTGCAGATATc
gttaaaaaaaagattcaaagtatgaaaaatattggtGGTGAACCACAGTA
ACACGGGCCCCTAACACCATTGTGTCGCAGACCCCCTGGGCcctagcccc
actggaaaatttcgtccccggtagaaAAATACGTTGGAATTCACTGGGAA
ATTGTATTTGagttcatccccattcgaaatctaatgtttaaaaattacac
tccaaaaccaATCGCACTggtttttttaaccttggaacaatggaatttct
atccccattggggtTTCAATTTTATCcacactgaggaaaaaagttccacc
gggactgtgagacaCGGTTGTGCATTACCAAGGGCATCAAAAGGCTCCAT
AAACCTCCTTCACAGTGCAAAGGTGGGTTTGATGAAAGGTATTCAAATTG
ATGAAGGACCATTCGCAGGTTCGCATAATGGAAAGGCTTATACCGGTTTA
TACTGTATTAGGTTCGAACAATCTTTTACTCAATCAAGGTGCTTTAGTCA
TTTTAAACTATTTCAGATTATTGAAAATAAGCATTATTAATGACTTTCAG
CCTCGTTTAGAGGGTCCCCAATTCCACAGTGCcgtcaaatatttcttgat
ttCTCAAGAAATTGTCGAATTCTTTTATTCAAATAGATTGGTTTTGAGTA
GAAATTAGttattgattttcatttttgaaaccCCTTTTTTTAGACTTTTG
GGGCTCATGACGTAAATTTATGTATTGTCTCTATGTAAATAATAAAGAAA
CGGAGAATACTTTTTcggattatttttttaataaattcacacatattaca
cgttttttataagaacataaggcttcgctggcataaatgttaagaacaag
ttaagaacatttaaaggctttgcggactcaaaAATACGctatttttttag
gaaaatggtcaaaaatatttacaaaatag Run BLAST on NCBI transcript from alignment at scaffold_284:1341205..1344448- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056974 ID=TCONS_00056974|Name=TCONS_00056974|organism=Clytia hemisphaerica|type=transcript|length=3244bp|location=Sequence derived from alignment at scaffold_284:1341205..1344448- (Clytia hemisphaerica)
GTTTTGTAACTGCCACAAATATGTATTTATTTTTGTCAAGATATTTTCGA
CGCTAATATTCTGTCTACAAGTGCAAGGTATACAGTTGTCAACGTTCTAC
CTTCTAGAGGCTGCAACTTTTAATGTGATAGTTTAGCCTTTTACTTAGGC
AAATTGGGTGCTGTGTATGTGCGAGTCATAAGGGTCCCTTTTTCAAATGC
TCGAAAGTCCCTCAATGGGTTACAAAACCAAAAAAAAGACAATTGAGTCT
CTTTAAGGGTCTAAAATCGAAATTTCCTCTCCCAAAGGGTCATGATTTTC
CAAAATTTGGACAAAAAACGAGCGAAAATGGACAAAAATTGTCAAAAACG
TCGAAATTCAGTCTTTCAAAGGGTTGATTTTCGATTTTTGGCTCGAATAT
ACCCGTCACCTCGCAAACTTAGTAGCCCCCGCCCGGGGCGGGCTTAAAGT
GAACGACATGACTTTAATACCTTCTTAAAATCCCTTTGTAAATATTTTTC
CAGATACTTGTCTTTTTTTTTTAATTTAGCAGGTAATGTTGACGCATTGG
AGAAAGTTTCAACAAGATCTCCTCCACCAAGAATGGCGGTTGTGGCGTAC
CTACCAAACAATTTGCAGAAAATGTACGAGTTCAACATGATGTTGTACGG
ATCATGGAAATATGTTGAATCTCATCAACAGGTTGAATTTGCGCGCTTTT
CTGGAATTCTTGATTAGGATATTACTAGTAGAGTGGAGTTTCCTTAATTG
GAACCTCTATAATTCAAATGCCTCCTTAAAACAAGTTTTATATTTTCTTC
AGTTAACAATGTCTTTTAAACCTAACTCCATAACTCGCAATCTCCGTAAC
TCGATCATCGACTGCGTGTTTGAGCATCGATGGCTCGAGTTACGGAGACT
CTGTAAAAGATTGCAAAAGTGTAACACTCTTTTTATCGCATACTTTAGAC
TATAACTAGAAAACTGTATAGGGGAATGAATATACCATCAGAGATAGCAG
GCTCTCAATTCAATTCTAAAACCAAACCAACTAAAAAAAGTGAGACAACT
TTATGTTATACTTAAACCATTTTGATTCTCTCTCTTTGCAGATCTTCTTC
AATCAGAATCCTAAACCGTCTATCAATCTCATCGACCTGATTGTGTTTTT
TGACCAATCATTTGACGAACAGATACCAGTTGATTGCCAAATTTTCCGTT
ACCATGGAAAAGAGGCTACTCGTCACCAACTCTTACAAAACGACGCTACC
TTGAATTCATTCGTCGATAAAAACAACAACAAAGATGCTTCCGAATTTCG
TCTTCAACTTGATCAGCTGAAGAATACAAATCATACGAAAACACGGATTT
CCGAAGATGAAATCATGTTTCGGTCAGCTTGTTGGAGAATACCTCAATCG
AACAATACGTTCAAAGATGGATTCTCTTCATTGGATAATCTCTTACCGTT
TCTTAGAGAAGGTATCGACGAAATGTTTGAGGAATATCAATATATTCTCA
ATGTAGACACTGATTCGATACTGACACCAGGGCTATGGACCCTCAATCTT
AATCAAGTGGTCCTCGCATCTGGTGTTCAACAAGAATGCCCTGCAGATCG
TAAATTATTAACCTTACAAGCTGCAACGAAAATTGGTTTAGAGTTTCCCC
TAGGTAGACCTTGGACAACATTTTCAATATTTGGTGAAACCAATATCATC
CTGCCATTTATGTTTGAGGTTTACCGACTTTCTGTTTTCCTTATGCATGA
TGACTTGAATGAATGGAATGCAAAACACGAAGAACAATCACATAAACAGT
TGCAAATAGCTAAAGACCTTGTAATATATCAAGCAGCAAAGATGTTACAG
ATTGAAAATAAAGGAAGGTTTCGCATTCTAGATTCATTGCCGTGTTCCAG
AAGCCATCAAAAAGGTACACGAAGTGTTCTGAGCATTTCTGTAAAGAAGG
ACCATAAATGTCGTTTCGATAAAAGTCAATTCTTTAACCTTCTCGCGAAT
CTTCAAACGATGACCCCGGGAGAGAAAAAAGATTTTTTAAGCCATGCTAA
AGAAGAATGGAATCACGAGCAAGCCTCAAAACTGAATCTTGAAAACTATG
CCAAATTTATCGCGTATAAGTATGCAGCGATTCATTTTAGTGAGATCTTT
AAATTCTGATTGCAGTCTCTGATCATCGTCGAAATTTTCCTATTCCCAAG
TTAAGCAATATTTTTTTAACTCAAAAATATTCTGACGATAACATAATGTG
TCATTTTTGCGCCAGTATGGTAAGTGGCCTAGCTACAACTTGCACTTTTT
TTGCCTGCAGATATCGTTAAAAAAAAGATTCAAAGTATGAAAAATATTGG
TGGTGAACCACAGTAACACGGGCCCCTAACACCATTGTGTCGCAGACCCC
CTGGGCCCTAGCCCCACTGGAAAATTTCGTCCCCGGTAGAAAAATACGTT
GGAATTCACTGGGAAATTGTATTTGAGTTCATCCCCATTCGAAATCTAAT
GTTTAAAAATTACACTCCAAAACCAATCGCACTGGTTTTTTTAACCTTGG
AACAATGGAATTTCTATCCCCATTGGGGTTTCAATTTTATCCACACTGAG
GAAAAAAGTTCCACCGGGACTGTGAGACACGGTTGTGCATTACCAAGGGC
ATCAAAAGGCTCCATAAACCTCCTTCACAGTGCAAAGGTGGGTTTGATGA
AAGGTATTCAAATTGATGAAGGACCATTCGCAGGTTCGCATAATGGAAAG
GCTTATACCGGTTTATACTGTATTAGGTTCGAACAATCTTTTACTCAATC
AAGGTGCTTTAGTCATTTTAAACTATTTCAGATTATTGAAAATAAGCATT
ATTAATGACTTTCAGCCTCGTTTAGAGGGTCCCCAATTCCACAGTGCCGT
CAAATATTTCTTGATTTCTCAAGAAATTGTCGAATTCTTTTATTCAAATA
GATTGGTTTTGAGTAGAAATTAGTTATTGATTTTCATTTTTGAAACCCCT
TTTTTTAGACTTTTGGGGCTCATGACGTAAATTTATGTATTGTCTCTATG
TAAATAATAAAGAAACGGAGAATACTTTTTCGGATTATTTTTTTAATAAA
TTCACACATATTACACGTTTTTTATAAGAACATAAGGCTTCGCTGGCATA
AATGTTAAGAACAAGTTAAGAACATTTAAAGGCTTTGCGGACTCAAAAAT
ACGCTATTTTTTTAGGAAAATGGTCAAAAATATTTACAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056974-exon-scaffold_284-1575043694:1344372..1344448 | TCONS_00056974-exon-scaffold_284-1575043694:1344372..1344448 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1575043694:1343768..1343916 | TCONS_00056974-exon-scaffold_284-1575043694:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1575043694:1341205..1343357 | TCONS_00056974-exon-scaffold_284-1575043694:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1510915933:1344372..1344448 | TCONS_00056974-exon-scaffold_284-1510915933:1344372..1344448 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1510915933:1343768..1343916 | TCONS_00056974-exon-scaffold_284-1510915933:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1510915933:1341205..1343357 | TCONS_00056974-exon-scaffold_284-1510915933:1341205..1343357 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1491911889:1344372..1344448 | TCONS_00056974-exon-scaffold_284-1491911889:1344372..1344448 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1491911889:1343768..1343916 | TCONS_00056974-exon-scaffold_284-1491911889:1343768..1343916 | Clytia hemisphaerica | exon |
| TCONS_00056974-exon-scaffold_284-1491911889:1341205..1343357 | TCONS_00056974-exon-scaffold_284-1491911889:1341205..1343357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1341205..1344448 - |
Blast
The following BLAST results are available for this feature:
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