|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056980 ID=TCONS_00056980|Name=TCONS_00056980|organism=Clytia hemisphaerica|type=transcript|length=1983bp
CAAAAAGTATGATATGTATCTCTTCacctttcattttcctagattagtga
ttcaaacaaaaaaataagatgaaaAAGAAAGCGCCGCCAACAACCGATAC
CACAAGGAAAATGAACCCTGTGGTCAGTGGTATGATGATGACTGGCACCA
TCTTCGGCTCCGCTACAATATTACTCCCTGGGGTTGTGTCCCAAATCAGT
ACCACATCATATTTCTTTATTTTGTTCTTCTATGTGGCACTGGCTTATGC
ATGTACGATGTTTGCTAATTATGTATTTGGTGATTTGTTAAGCAAAACCC
TGGAAAATGACGAATCGTTGCGGAGACCATTACAATATTGTACTGAACGT
GCATTTGGAAAGAATTCATGGCTCAATGTACTTTTTACTTGCATTCAAAT
CACCAGCAACCTTTCCCTGGTTGTCTCTGCTACAATGATTGTTgctacca
ttttagaatctgCATTGCCAATCTTGCCATTGAATTTAAATTCATCAAAC
TTAACTCGCATTTGGCTACTTATCACATTTTTGGGACTGCTACCAACCCA
AATGATCGGTTCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTT
TTTTCAGTGTGACTGCATTATTCTTGGTTATTGTATCAGGATACATAGTG
CAAGCAAATAATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGA
GAAAGCACTACCGTGGATAGACTACACACCACCATACACATTTTTCTCAG
TTTCTGGCACTATATTTTTCTCACTTGCTGGATATATGTTGGTATTACCG
AGCCTGGCAGCTATAGATCCAGATACTGGATCTCTTAATAGGACAGTCAC
AACATCAGCTGTATGTGTTTATATATTGTACTGTGTAGCAGGCTATGTGA
CCTACTTATTATTCAACGATTACGTCATCGAAGTTTCGATTGTTGATACG
ATACAAAGGatagcgaagggagcagaaaaTTCTACTTTGTTGGTATTTGC
CAAGATCATTGAAGCTCTTTTGGTGCTCCACTTTGTTTGTGCTATATGTC
TTGCTGGTAATCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCG
AATGAATTTTGTTGGAAGCGGTTTTTACTACGAACTCTCATTTTTGGTGC
TTGCACTTTGATTGTCATCATATTTCCAAAACTTTCGCAATTCGTATCTT
GGCTTGGTGGAGGATTTTTGTTCAACCTGGCGACATTCGTTCCAATCATT
TTGTATTTGTGTTTATGTGAAACTTCAATAACGACCAAAGTGTTCTGTTg
gtttttatttactttatcGCTGGTGATTGCAATTGGAGTGAATTATGTGG
GACTGGATGTTCTTTTATAAAAGATCAAACATATTGAAGTTATTTCGAAG
CTTGCgtgtctttttaaagtttttaaacttAGATGTACACTGTATTTACG
AAGTTTGGTGTTGTGAAACCTATCACCAAGTTTCTATATCCAATTTTAAG
GGAATCCAAGAATCCAAAATTGTTGTTCAGAAATgctgctcaccttggag
acctgctgcggttatgagtacAAACGGATGTgaaaatcaatctgtccccc
gaATTTTCAAGGgtcgacgcaccggactctgcaagaaTTCCAAGGCTTTA
CCTATTGTCATGCTTTTTTGTCGTAGTTAGATGTTTTTCTTTAGATCGAG
AAGTTAATTTTACAATTGAAATAATTTCTAAGTCTTTTGGGTGCGTCTCT
TTGTTGGATTGATCTGCAAATAGTCGACTTGGAAGACAAAATTTAAGCAA
ATGCCTTtttaaatttagcaaaatctCCTCTCAGTTAATATAATAGCAAC
GAGGGGTAAATCTCTCGAAAATTTTGTTCGAGAtttgtgaattatttttg
atttatgatttatttttgatttattttttatattttttattttagtgatt
tacctCGAATAGCAAgacaattttttgtcaaaa Run BLAST on NCBI transcript from alignment at scaffold_284:1351891..1354326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056980 ID=TCONS_00056980|Name=TCONS_00056980|organism=Clytia hemisphaerica|type=transcript|length=2436bp|location=Sequence derived from alignment at scaffold_284:1351891..1354326- (Clytia hemisphaerica)
CAAAAAGTATGATATGTATCTCTTCACCTTTCATTTTCCTAGATTAGTGA
TTCAAACAAAAAAATAAGATGAAAAAGAAAGCGCCGCCAACAACCGATAC
CACAAGGAAAATGAACCCTGTGGTCAGTGGTATGATGATGACTGGCACCA
TCTTCGGCTCCGCTACAATATTACTCCCTGGGGTTGTGTCCCAAATCAGT
ACCACATCATATTTCTTTATTTTGTTCTTCTATGTGGCACTGGCTTATGC
ATGTACGATGTTTGCTAATTATGTATTTGGTGATTTGTTAAGCAAAACCC
TGGAAAATGACGAATCGTTGCGGAGACCATTACAATATTGTACTGAACGT
GCATTTGGAAAGAATTCATGGCTCAATGTACTTTTTACTTGCATTCAAAT
CACCAGCAACCTTTCCCTGGTTGTCTCTGCTACAATGATTGTTGCTACCA
TTTTAGAATCTGCATTGCCAATCTTGCCATTGAATTTAAATTCATCAAAC
TTAACTCGCATTTGGCTACTTATCACATTTTTGGGACTGCTACCAACCCA
AATGATCGGTTCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTT
TTTTCAGTGTGACTGCATTATTCTTGGTTATTGTATCAGGATACATAGTG
CAAGCAAATAATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGA
GAAAGCACTACCGTGGATAGACTACACACCACCATACACATTTTTCTCAG
TTTCTGGCACTATATTTTTCTCACTTGCTGGATATATGTTGGTATTACCG
AGCCTGGCAGCTATAGATCCAGATACTGGATCTCTTAATAGGACAGTCAC
AACATCAGCTGTATGTGTTTATATATTGTACTGTGTAGCAGGCTATGTGA
CCTACTTATTATTCAACGATTACGTCATCGAAGTTTCGATTGTTGATACG
ATACAAAGGATAGCGAAGGGAGCAGAAAATTCTACTTTGTTGGTATTTGC
CAAGATCATTGAAGCTCTTTTGGTGCTCCACTTTGTTTGTGCTATATGTC
TTGCTGGTAATCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCG
AATGGTAAGGCTTTATATATTTCTCCTTAAAAATCACTTACTCCTTTGGA
GTGGGGAGTTGGTAGAAAGTCGATCATTGATTGATTTTGGGGTCATTTTT
ACCAAAACACCCTAGGAAATATAGACTTTGACTTTTTTTAGGAATATGTA
GTATGATACGATAGGAAGGGGCTAGTTATGAAATGCTACTTGGGTGATTT
TTCAGAAAAGTTGAAAGGTGACCTTCATACAATTGAGTGAGATAGAGTGA
TTATCTGAAAATCTCTGTTAAGGGTAAATTTATTGTTCATTCCTCAGCCT
CGTTCAACACTTTGTAAAATTCTTGACCCTACCATATGACTTCGAATAAA
CGCCCGGGCGTTAAATAAATTTTTAAGATTTTAGGAAGTGCGTTTAATCT
AAGGGGCGTTCGAAGTAATACGATATTTGTTAAAATAGACTATTTATTTT
CTCATAGAATTTTGTTGGAAGCGGTTTTTACTACGAACTCTCATTTTTGG
TGCTTGCACTTTGATTGTCATCATATTTCCAAAACTTTCGCAATTCGTAT
CTTGGCTTGGTGGAGGATTTTTGTTCAACCTGGCGACATTCGTTCCAATC
ATTTTGTATTTGTGTTTATGTGAAACTTCAATAACGACCAAAGTGTTCTG
TTGGTTTTTATTTACTTTATCGCTGGTGATTGCAATTGGAGTGAATTATG
TGGGACTGGATGTTCTTTTATAAAAGATCAAACATATTGAAGTTATTTCG
AAGCTTGCGTGTCTTTTTAAAGTTTTTAAACTTAGATGTACACTGTATTT
ACGAAGTTTGGTGTTGTGAAACCTATCACCAAGTTTCTATATCCAATTTT
AAGGGAATCCAAGAATCCAAAATTGTTGTTCAGAAATGCTGCTCACCTTG
GAGACCTGCTGCGGTTATGAGTACAAACGGATGTGAAAATCAATCTGTCC
CCCGAATTTTCAAGGGTCGACGCACCGGACTCTGCAAGAATTCCAAGGCT
TTACCTATTGTCATGCTTTTTTGTCGTAGTTAGATGTTTTTCTTTAGATC
GAGAAGTTAATTTTACAATTGAAATAATTTCTAAGTCTTTTGGGTGCGTC
TCTTTGTTGGATTGATCTGCAAATAGTCGACTTGGAAGACAAAATTTAAG
CAAATGCCTTTTTAAATTTAGCAAAATCTCCTCTCAGTTAATATAATAGC
AACGAGGGGTAAATCTCTCGAAAATTTTGTTCGAGATTTGTGAATTATTT
TTGATTTATGATTTATTTTTGATTTATTTTTTATATTTTTTATTTTAGTG
ATTTACCTCGAATAGCAAGACAATTTTTTGTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056980-exon-scaffold_284-1575043694:1353223..1354326 | TCONS_00056980-exon-scaffold_284-1575043694:1353223..1354326 | Clytia hemisphaerica | exon |
| TCONS_00056980-exon-scaffold_284-1575043694:1351891..1352769 | TCONS_00056980-exon-scaffold_284-1575043694:1351891..1352769 | Clytia hemisphaerica | exon |
| TCONS_00056980-exon-scaffold_284-1510915933:1353223..1354326 | TCONS_00056980-exon-scaffold_284-1510915933:1353223..1354326 | Clytia hemisphaerica | exon |
| TCONS_00056980-exon-scaffold_284-1510915933:1351891..1352769 | TCONS_00056980-exon-scaffold_284-1510915933:1351891..1352769 | Clytia hemisphaerica | exon |
| TCONS_00056980-exon-scaffold_284-1491911889:1353223..1354326 | TCONS_00056980-exon-scaffold_284-1491911889:1353223..1354326 | Clytia hemisphaerica | exon |
| TCONS_00056980-exon-scaffold_284-1491911889:1351891..1352769 | TCONS_00056980-exon-scaffold_284-1491911889:1351891..1352769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1351891..1354326 - |
Blast
The following BLAST results are available for this feature:
|
