TCONS_00057043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057043
Unique NameTCONS_00057043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057043 ID=TCONS_00057043|Name=TCONS_00057043|organism=Clytia hemisphaerica|type=transcript|length=812bp
tttcaggttgTTACCATCATACTGCCCAATAACCTAGATCCATGAATTAT
TTTGTACCTTCACGTGGTTGGCAACAATGagaattggcttaaaatttgtc
TGAATTTGTCGCGTACAAGCCTCAATATCTTTGTAAACACCAACAAATTC
TGCTAATAAGGTGGATGAGTGGAAACCATATTTAACTCAATGGAAACAAC
AATGGAATAATTCTATCAAATTGATTATGTGCATTTTGTGTACCTAACAA
TTTGTTTCTATCTTGGATgtttttggattcaaatttttccCTGTAAACTG
AATATCAATTTGTATCATATAAATCCTCTCTGGAAAGTACNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGCTGCATTATGTAcaaatcagttttttt
tctgatgacATTGCTGATGTCATGGTTTGTTTGCAGTTGGATTGAGGGCT
TTTTATCCCTGTTTTACCAGGTTTTCCTGCTTGATTACGCAAATAGTCCC
AAACAAGACACCAGAATGCGGGTAGACTACAATTACAAAATATGAACCAA
CCATAGGGATATCAAAATGCTTTAATAGAAATTCCAGTTTGGACACTGAA
CTATTTTCATGCATCACATATTATATAATTATTCATCTTCAGTCTGGTAA
TATTTatgctctttttctctaaaatttcatttgaaaggGTAAATAGCTTT
TTATCTTTGAGTCACACCTCTATTGGAATTAGTGAGCCCCCCTAAATCCA
AGAGTGTTTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_284:1437231..1438042

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057043 ID=TCONS_00057043|Name=TCONS_00057043|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at scaffold_284:1437231..1438042 (Clytia hemisphaerica)
GTGAAACACTCTTGGATTTAGGGGGGCTCACTAATTCCAATAGAGGTGTG
ACTCAAAGATAAAAAGCTATTTACcctttcaaatgaaattttagagaaaa
agagcatAAATATTACCAGACTGAAGATGAATAATTATATAATATGTGAT
GCATGAAAATAGTTCAGTGTCCAAACTGGAATTTCTATTAAAGCATTTTG
ATATCCCTATGGTTGGTTCATATTTTGTAATTGTAGTCTACCCGCATTCT
GGTGTCTTGTTTGGGACTATTTGCGTAATCAAGCAGGAAAACCTGGTAAA
ACAGGGATAAAAAGCCCTCAATCCAACTGCAAACAAACCATGACATCAGC
AATgtcatcagaaaaaaaactgatttgTACATAATGCAGCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTACTTTCCAGAGAGGATTTATATGATA
CAAATTGATATTCAGTTTACAGggaaaaatttgaatccaaaaacATCCAA
GATAGAAACAAATTGTTAGGTACACAAAATGCACATAATCAATTTGATAG
AATTATTCCATTGTTGTTTCCATTGAGTTAAATATGGTTTCCACTCATCC
ACCTTATTAGCAGAATTTGTTGGTGTTTACAAAGATATTGAGGCTTGTAC
GCGACAAATTCAgacaaattttaagccaattctCATTGTTGCCAACCACG
TGAAGGTACAAAATAATTCATGGATCTAGGTTATTGGGCAGTATGATGGT
AAcaacctgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035938XLOC_035938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057043-exon-scaffold_284-1491911889:1437231..1438042TCONS_00057043-exon-scaffold_284-1491911889:1437231..1438042Clytia hemisphaericaexon
TCONS_00057043-exon-scaffold_284-1510915933:1437231..1438042TCONS_00057043-exon-scaffold_284-1510915933:1437231..1438042Clytia hemisphaericaexon
TCONS_00057043-exon-scaffold_284-1575043694:1437231..1438042TCONS_00057043-exon-scaffold_284-1575043694:1437231..1438042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1437231..1438042 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.701715	1.06448	0.166471	0.142794	4.06951	2.3544	3.55953	2.28061	1.07437	2.25042	1.72605	0.603176	1.51013	1.53421	0.768806	1.34974	1.01097	1.2933	2.17316	1.93353	1.91841	2.50984	2.14241	2.60101	0.454003	0.629524	4.07202	3.94856	7.04724	5.79617
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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