TCONS_00057101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057101
Unique NameTCONS_00057101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length927

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057101 ID=TCONS_00057101|Name=TCONS_00057101|organism=Clytia hemisphaerica|type=transcript|length=927bp
TGTTAAATTGAGAAATGCTGACGTCTGCATTACCACTGCAAGACCGTATT
TGTTCAACAACAGTGCAAATGGTATGGAGAAAAGAACTAAACAGATTCCA
AATACAATTGAAAGCATATTGATCGACAAGATGCTGATTTGGTAATATTC
TCTTAAGATGTTGGATACTGCTGGAAAGCAAAGCCAATTTGAGCCACAGA
CCAAGGATAGGAGGCAATATGATGCCAGGACGAACCAACGTTGAGGGTGA
AGCTGGAATATGATATCCTCTTCTGGAGATACTGGTTGTAAtggtggttc
tggtgattcTGTATCATCTTCGGTGATGATTGGCGATGATTGATGAATAT
CGTTGAGATTGTCGAAGGATTCTTTAGTGTTGCTTGATGATGGTGGTTTT
TGGTAAATGAATGGAGGCTCTGGTTGTTGTTGACATTTTGTATTTGAGCA
TGGAGCCATTGTTGTTTTACAAAGTGTTTTGGTATGAGTTTGTGGATTTG
ATTGAAACCTTCTTTTGTTCTGTGCTTTTATTTGAAACACTCTCTTTTTC
TTCCTATCTGAGTTTGACTGGTTATGTGGAAGGATCTCTTGGTTTTCTCT
TGAGAGTCGATTAACTTTCCTTGTGCTAGAAGCTCTTTGTAGACTCCAAT
AGTATTGTTTGGTCATATGGAAGAGCTCTTCTTTGGTTAATGAATTTTCC
TAGTTGTACAAACTTTTTGTACACTCGAATGATGTTATGCGGTTTAAATC
ACAAATAACTAAGTCGtcAAGAGTTGATCAATCTTGATATACGGTTTTTA
CCAAATGTAAAATGATGAGCAAAATaatccaaaatttgaaaataaaaaat
tcaaaatactgTGCAGCAATAAATCCAAAATGCaggattgaaataaatat
acaaTATTGGTCAAACCAATGTTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_285:173225..174187-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057101 ID=TCONS_00057101|Name=TCONS_00057101|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at scaffold_285:173225..174187- (Clytia hemisphaerica)
TGTTAAATTGAGAAATGCTGACGTCTGCATTACCACTGCAAGACCGTATT TGTTCAACAACAGTGCAAATGGTATGGAGAAAAGAACTAAACAGATTCCA AATACAATTGAAAGCATATTGATCGACAAGATGCTGATTTGGTAATATTC TCTTAAGATGTTGGATACTGCTGGAAAGCAAAGCCAATTTGAGCCACAGA CCAAGGATAGGAGGCAATATGATGCCAGGACGAACCAACGTTGAGGGTGA AGCTGGAATATGATATCCTCTTCTGGAGATACTGGTTGTAATGGTGGTTC TGGTGATTCTGTATCATCTTCGGTGATGATTGGCGATGATTGATGAATAT CGTTGAGATTGTCGAAGGATTCTTTAGTGTTGCTTGATGATGGTGGTTTT TGGTAAATGAATGGAGGCTCTGGTTGTTGTTGACATTTTGTATTTGAGCA TGGAGCCATTGTTGTTTTACAAAGTGTTTTGGTATGAGTTTGTGGATTTG ATTGAAACCTTCTTTTGTTCTGTGCTTTTATTTGAAACACTCTCTTTTTC TTCCTATCTGAGTTTGACTGGTTATGTGGAAGGATCTCTTGGTTTTCTCT TGAGAGTCGATTAACTTTCCTTGTGCTAGAAGCTCTTTGTAGACTCCAAT AGTATTGTTTGGTCATATGGAAGAGCTCTTCTTTGGTTAATGAATTTTCC TAGTTGTACAAACTTTTTGTACACTCGAATGATGTTATGCGGTTTAAATC ACAAATAACTAAGTCGGTAAATAAATACGATCCAATGTAAAAAATATACA AGTCAAGAGTTGATCAATCTTGATATACGGTTTTTACCAAATGTAAAATG ATGAGCAAAATAATCCAAAATTTGAAAATAAAAAATTCAAAATACTGTGC AGCAATAAATCCAAAATGCAGGATTGAAATAAATATACAATATTGGTCAA ACCAATGTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035968XLOC_035968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057101-exon-scaffold_285-1575043694:173422..174187TCONS_00057101-exon-scaffold_285-1575043694:173422..174187Clytia hemisphaericaexon
TCONS_00057101-exon-scaffold_285-1575043694:173225..173385TCONS_00057101-exon-scaffold_285-1575043694:173225..173385Clytia hemisphaericaexon
TCONS_00057101-exon-scaffold_285-1510915933:173422..174187TCONS_00057101-exon-scaffold_285-1510915933:173422..174187Clytia hemisphaericaexon
TCONS_00057101-exon-scaffold_285-1510915933:173225..173385TCONS_00057101-exon-scaffold_285-1510915933:173225..173385Clytia hemisphaericaexon
TCONS_00057101-exon-scaffold_285-1491911889:173422..174187TCONS_00057101-exon-scaffold_285-1491911889:173422..174187Clytia hemisphaericaexon
TCONS_00057101-exon-scaffold_285-1491911889:173225..173385TCONS_00057101-exon-scaffold_285-1491911889:173225..173385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:173225..174187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (12.1848 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45751 0.983115 0.340523 0.760017 1.15258 0.178309 2.32035 3.85969 1.41453 2.69843 2.19813 2.74563 1.26583 0.186772 0.675731 1.09316 0.9841 2.30767 0 0.707447 1.06827 1.94568 1.79122 1.26346 12.1848 9.60059 0.146526 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
back to top