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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=transcript|length=1909bpRun BLAST on NCBI protein sequence of TCONS_00005652-protein >TCONS_00005652-protein ID=TCONS_00005652-protein|Name=TCONS_00005652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MSSKRGASGDGSEPPSKKKAFLLSQTAVNLGPISTEEELDLKVVKIQNAKRun BLAST on NCBI transcript from alignment at sc0000054:443912..456301- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=transcript|length=12390bp|location=Sequence derived from alignment at sc0000054:443912..456301- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:443912..456301- >TCONS_00005652 ID=TCONS_00005652|Name=TCONS_00005652|organism=Clytia hemisphaerica|type=CDS|length=22776bp|location=Sequence derived from alignment at sc0000054:443912..456301- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005652 vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4) HSP 1 Score: 211.46 bits (537), Expect = 5.857e-58 Identity = 164/516 (31.78%), Postives = 274/516 (53.10%), Query Frame = 1
Query: 121 VNLGPISTEEELDLKVVKIQNAKLYSKLEEKNAQEEESKVRFAKLERLRNNDQNIISSMNVAWNQLDQDVNNLLK-----------------RFGDVSEDEALA------------------MSETTVAFLEKLSNRTTKGTSEEIQKRVTHSSSIIERLVVRIEKNMKRNKELIETLKNDXXXXXXXXXXXXXXGDQNDFEDERNDISSTELELRQELSLTKSENLKLHDSMTSLQDKYRTMSTEYSEMKDRLATMQKENAELKAKQEDMEYDLQRATKQFEKLIKKLNETHEQXXXXXXXXXXXXXXXXXXXXXXXXXXHVKLVKDTPEDIKAEMDAKDELAXXXXXXXXXXXXXXXXXHVEHDKLKQQLMQLPDEVIINHTKYKMLQTQFNLCYNDAQEIRRHCEEARKIVVNNRSQHIQQQEHYEMEIQTQRKKVRAEISQLERALAESRKDLELLRVEYEHNMKAHEQIGPMAKEMRHLINSLQNHNQQLKGEVSRYKKKLTDVEKKLGDI 1563
+ LG IS+ EE+DLKV++ +N KL +LE++ A E+E + R KLE+ + D + +N W QLD+ V LL+ + G + L +SE +AF+ L +++ E+Q R+ S + + R+V ++ +R +EL + + + GD E + EL EN +L D T LQ+K+ +S EYSE++D++ + + + E++ ED+++D+++ K+ +KL K L E EQ + S + SG + L E + AE++ ELAN+R+ EL+KLQ Q +++LK L LP+EV+ +Y+MLQ QF+L YN++ +++ +EAR +++ ++ H++ EH E + +KK+R E+ QLE LA+ RK+ E+LR+E+E N+ A+EQ GP+ +EMRHLI+SLQNHN QLKG+ RYK+KL +V+ ++G +
Sbjct: 36 IRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYS--------------RGDSEPL-SEAAQAHTREL---------GRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGG---------QITLSMQKFEMLNAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQFSLLYNESLQVKTQLDEARGLLLATKNSHLRHIEHMESDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKL 518 The following BLAST results are available for this feature:
BLAST of TCONS_00005652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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