TCONS_00057141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057141
Unique NameTCONS_00057141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057141 ID=TCONS_00057141|Name=TCONS_00057141|organism=Clytia hemisphaerica|type=transcript|length=370bp
AGNGGCTGAACTATCTAAATGTCAGAatataatttattttgaaataaaaa
ctgaTGAAAGTTAAATACAATTGAGACAATTGAGGCTCAGGGCtagtaaa
atctttaaaatgtattttgaaattctcgccaaattttctttttaattacg
TACTGTCATCGATTTCTCCGATGAAAACCCTTTGATACTTTTTGCCTAGG
ATTTTACTCAATATTTACCCAAAGACCAGAAGGTGCTTTAAACTTAAAAC
GAATTATTGAAAACAAATCCTTCTTTCAGTAGGCCTGTGTATGATCTAGG
TTCTTGGCATCCGCTAACGGATTCGTAATTTTTATATACTGAAGTCTGTC
acaatataatttgcagtggA
Run BLAST on NCBI

transcript from alignment at scaffold_285:288064..288433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057141 ID=TCONS_00057141|Name=TCONS_00057141|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at scaffold_285:288064..288433 (Clytia hemisphaerica)
TccactgcaaattatattgtGACAGACTTCAGTATATAAAAATTACGAAT
CCGTTAGCGGATGCCAAGAACCTAGATCATACACAGGCCTACTGAAAGAA
GGATTTGTTTTCAATAATTCGTTTTAAGTTTAAAGCACCTTCTGGTCTTT
GGGTAAATATTGAGTAAAATCCTAGGCAAAAAGTATCAAAGGGTTTTCAT
CGGAGAAATCGATGACAGTAcgtaattaaaaagaaaatttggcgagaatt
tcaaaatacattttaaagattttactaGCCCTGAGCCTCAATTGTCTCAA
TTGTATTTAACTTTCAtcagtttttatttcaaaataaattatatTCTGAC
ATTTAGATAGTTCAGCCNCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036000XLOC_036000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057141-exon-scaffold_285-1491911889:288064..288433TCONS_00057141-exon-scaffold_285-1491911889:288064..288433Clytia hemisphaericaexon
TCONS_00057141-exon-scaffold_285-1510915933:288064..288433TCONS_00057141-exon-scaffold_285-1510915933:288064..288433Clytia hemisphaericaexon
TCONS_00057141-exon-scaffold_285-1575043694:288064..288433TCONS_00057141-exon-scaffold_285-1575043694:288064..288433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:288064..288433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.881435	1.07442	0.499003	0	0.297166	0.234825	0.283306	1.06091	0.371384	0.690029	0.223253	0.440273	0	0	0	0	0.165422	0.169553	0.936984	1.71585	1.06528	1.55881	0.252659	1.37822	0.473179	0.21115	0.906466	0.322468	1.2229	0.498378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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