|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057113 ID=TCONS_00057113|Name=TCONS_00057113|organism=Clytia hemisphaerica|type=transcript|length=4354bpRun BLAST on NCBI protein sequence of TCONS_00057113-protein >TCONS_00057113-protein ID=TCONS_00057113-protein|Name=TCONS_00057113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1104bp MDKQTFVLEHDAELACKSSQNAIIMEVTGSDEETNKDLTIQQMEFDNEKSRun BLAST on NCBI transcript from alignment at scaffold_285:304739..313109- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057113 ID=TCONS_00057113|Name=TCONS_00057113|organism=Clytia hemisphaerica|type=transcript|length=8371bp|location=Sequence derived from alignment at scaffold_285:304739..313109- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_285:304739..313109- >TCONS_00057113 ID=TCONS_00057113|Name=TCONS_00057113|organism=Clytia hemisphaerica|type=CDS|length=23205bp|location=Sequence derived from alignment at scaffold_285:304739..313109- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057113 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 471.085 bits (1211), Expect = 1.850e-146 Identity = 255/592 (43.07%), Postives = 340/592 (57.43%), Query Frame = 2
Query: 914 EHSESNEEKEITTRSGTYSAAKTLNQCLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNLRRHLLSHHGEAPFNCEQCGKSFNNSKTYEKHLKLHQGEELFNCGKCEMGFSTEDEYKQHECAVDLEEKPHQCDTCSKRFKKLSDLKRHVRIHTGEKPYKCKDCGKMFSQSGTLQVHGRTLHNWKDSEKCDVCGKTFTTTEALKIHILKHTDKKPYKCKVCEKDFAHSSDLKRHSLIHTGERPYKCDICVKGFVSSSDLQRHRRTHTGEKPYKCDLCPKEFSQLYNLKLHSRSHVTDEVITSIPKGVKQHQCHLCDKKFLQPSSLKIHLRSHSGEKPYNCQLCGKLFSISCNLKRHLFTHSGEKPFECSICAKRFNVFTNLRTHFRLHTGEKPYKCKDCTKAFSDMSSLRKH 2689
++ E N +T R S K +C C K F L H R H K +C ECGK FT S L H+ + EKPY C ECGK ++ L H HTGEKPYKC C + F +S+L H +IHTGEKPF+C+ C K FT+ + L H IH+ +P+ C+ C K F+ S L H+ IHTGE PYKC+ECG+VF + L H+R HTGE+P+KC +CGK+FS++ NL H + H G PF C +C K F + H ++H GE+ + C +C FS H+ A+ EKP++C C K F + S L+ H IH+GEKPYKC +CGK+F+Q+ L H R +H + KC+ CG+ F+ +L H HT +KPYKC C K F H+S L H IHTGE+PYKC+ C K F S+L H+ HTGEKPYKC+ C K F+Q +L H R+H G K ++C+ C K F SSL H H+G+KPY C CGK+F+ + +L H H+GEKP+ C+ C K F V ++L TH +HTGEK YKC +C K F S+L H
Sbjct: 234 KYHELNHFSLLTQRRKANSCGKPY-KCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVI-----HTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHT----------GEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASH 807 HSP 2 Score: 437.187 bits (1123), Expect = 6.553e-134 Identity = 227/510 (44.51%), Postives = 303/510 (59.41%), Query Frame = 2
Query: 1163 KPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNLRRHLLSHHGEAPFNCEQCGKSFNNSKTYEKHLKLHQGEELFNCGKCEMGFSTEDEYKQHECAVDLEEKPHQCDTCSKRFKKLSDLKRHVRIHTGEKPYKCKDCGKMFSQSGTLQVHGRTLHNWKDSEKCDVCGKTFTTTEALKIHILKHTDKKPYKCKVCEKDFAHSSDLKRHSLIHTGERPYKCDICVKGFVSSSDLQRHRRTHTGEKPYKCDLCPKEFSQLYNLKLHSRSHVTDEVITSIPKGVKQHQCHLCDKKFLQPSSLKIHLRSHSGEKPYNCQLCGKLFSISCNLKRHLFTHSGEKPFECSICAKRFNVFTNLRTHFRLHTGEKPYKCKDCTKAFSDMSSLRKHR 2692
KPY C ECGK + Q L H H+GEKPYKC C + F S+L H +IHTGEKP++C C K F + L H+ IH+ +P+ C+ C K F S+L H+ IHTGE P+KC+ECG++F+Q + L H R HTGE+P+KC +CGK+FSV +L H H GE P+ C +CGK F + +H ++H GE+ + C +C FS H+ + KP +C+ CSK F + S L H RIHTGEKPYKC +CGK FS +L H + +H+ + KC CGK+FT L+ H H+ +KPYKC C K FA +S L RH +HTGE+PYKC+ C + F S L H+ HTGEKPYKC C K F L H R H G K ++C+ C K F S+L H H+GEKPY C CGK+F+ + +L H TH+GEKP+ C+ C K F+V ++L TH +HTG+KPYKC +C K F+ + L HR
Sbjct: 255 KPYKCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQ-VIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH-QAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHT----------GEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHR 752 HSP 3 Score: 422.935 bits (1086), Expect = 1.001e-128 Identity = 231/540 (42.78%), Postives = 303/540 (56.11%), Query Frame = 2
Query: 989 QCLVCNKTFNTIGGLHKHLRTHKNNKENECKECGKLFTDPSYLERHECMKLSTEEPSEKPYSCTECGKNYKQQYLLKRHMCSHTGEKPYKCGLCEREFGCNSDLQKHLMIHTGEKPFRCDICDKAFTRKNDLHRHKFIHSDVRPFVCDICTKGFNRTSDLRRHKRIHTGETPYKCDECGEVFSQKTSLNVHQRQHTGERPFKCKKCGKSFSVNCNLRRHLLSHHGEAPFNCEQCGKSFNNSKTYEKHLKLHQGEELFNCGKCEMGFSTEDEYKQHECAVDLEEKPHQCDTCSKRFKKLSDLKRHVRIHTGEKPYKCKDCGKMFSQSGTLQVHGRTLHNWKDSEKCDVCGKTFTTTEALKIHILKHTDKKPYKCKVCEKDFAHSSDLKRHSLIHTGERPYKCDICVKGFVSSSDLQRHRRTHTGEKPYKCDLCPKEFSQLYNLKLHSRSHV---------TDEVITS---------IPKGVKQHQCHLCDKKFLQPSSLKIHLRSHSGEKPYNCQLCGKLFSISCNLKRHLFTHSGEKPFE 2554
+C C KTF L H H K +C ECGK+F SYL H ++ T EKPY C ECGK ++ L H HTGEKP+KC C + F NS L H IHTGEKP++C+ C KAF+ ++ L H+ IH+ +P+ C+ C K F S L RH+R+HTGE PYKC+ECG+ FS ++L HQ HTG +PFKC +C K F+ N L H H GE P+ C +CGK+F+ + H +H GE+ + C +C F+ + + H + EKP++C+ C K F + S L RH R+HTGEKPYKC DCG+ FS +L H + +H + KC CGK F L H HT +KPYKC C K F+ S+L H +IHTGE+PYKC+ C K F +S L H+RTHTGEKPY+C+ C K FS +L H H +V T I G K ++C C K F SSL H+ H+GEK Y C CGK+F S NL H H+GEKP++
Sbjct: 286 KCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHR--RIHT---GEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHR-GIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFH-QAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKPYK 818 HSP 4 Score: 160.614 bits (405), Expect = 5.876e-40 Identity = 86/190 (45.26%), Postives = 110/190 (57.89%), Query Frame = 2
Query: 2123 DFAHSSDLKRHSLIHTGERPYKCDICVKGFVSSSDLQRHRRTHTGEKPYKCDLCPKEFSQLYNLKLHSRSHVTDEVITSIPKGVKQHQCHLCDKKFLQPSSLKIHLRSHSGEKPYNCQLCGKLFSISCNLKRHLFTHSGEKPFECSICAKRFNVFTNLRTHFRLHTGEKPYKCKDCTKAFSDMSSLRKHR 2692
+ H S L + ++ +PYKC+ C K F +S+L HRR H+GEKPYKC C K F+ NL +H H G K ++CH C K F S L H R H+GEKPY C CGK F NL H H+GEKPF+C+ C K F ++L +H+R+HTGEKPYKC +C KAFS SSL H+
Sbjct: 237 ELNHFSLLTQRRKANSCGKPYKCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHT----------GEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQ 416 The following BLAST results are available for this feature:
BLAST of TCONS_00057113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.