TCONS_00057148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057148
Unique NameTCONS_00057148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp
AATGGATGATTACCCTCAGGACTACGCAGAATTTATTGAAAATGGCGAGC
ATATCAATAATTATATGGATAGAATGGGAAATTCCGGTGAGTGGGCCGAT
GCTGCCATCATTCGAGCCACGGCAGATGCATTACAAATTGAGATCCATGT
AATAAGCTCAAATATGGACCACATCGAAACTTTCACACCACCAGGCCACA
CAGAAACAATTTTTCTTGGTCAAGTCATGAACATCCACTACGTTTCCACC
AGCAACATCAGGCAGCCCCAAACAATACCATTCGGTGGGGTCACGTCTGA
TGGAATAAGTCTAACAGATACTTCGGGAATGAACATCTCTCTAACAtggt
tttttaattttatgaaaaaaaatccagtgcTAACCCAAAAAATCAGTGAC
TTAAAAGCTACTGCTTCAAAAAAGCTAATGAGGAGTTTTGGGCAATTTCG
GGTCGGAAAGTCGGCGGAAGCTAAAAGGTTGTGGTATGAGTTGATAAAGA
GTAGGAAACTTCCTCTATCTACGTCATCAGTTAACGCTGCTAATATCAGT
GATCTAATTTGTTTGGAACCTGTGCATAATCATGGGCTAACAAAATTTAT
GTACAAAAAAGCATACGGATCTTGCAGTTCTAAAGACTGCAAGTGGAAAA
TACCTGATAGTCGCGAGTTCGAGCTCAATAGAACATCGATTGACCTAATT
AAAACTTTCCACATCGGTGAAAGAGAGAGATGTCCAGAGTGCGCGGGCCA
TTTTATTGGTGAGAATAGATTGACGGTAGCTTCTCCCTTCCTTATTATCT
TTGGAGATGGAAACTCCATGCATAGTTTCCCTGAGTCagtcattttgaaa
gaaaatgatcaCCCCCTGTGCTATGACCTTCAGTTTATCTCACTTAAAAC
TGAAAACACTAAAAGATGTCATTATAGCTCGTTTATGAAATATGGTGACA
CACACTGGacattttttgaacaatttgtATCTGGAAATCCAATCCGAAAC
TTTTTGACATTGCCAAGAGATACGGAACAgcagatttcttttgttattta
caTTTGCTTGGCATTACTTCAGTCGTTTTCACCTACATTCCGACAACTAG
GCAAAAAACGCAGCatcaaaaatgataatcaaAAGCCAAACAAGTGTAAG
AAAGTGATCCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00057148-protein

>TCONS_00057148-protein ID=TCONS_00057148-protein|Name=TCONS_00057148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MDDYPQDYAEFIENGEHINNYMDRMGNSGEWADAAIIRATADALQIEIHV
ISSNMDHIETFTPPGHTETIFLGQVMNIHYVSTSNIRQPQTIPFGGVTSD
GISLTDTSGMNISLTWFFNFMKKNPVLTQKISDLKATASKKLMRSFGQFR
VGKSAEAKRLWYELIKSRKLPLSTSSVNAANISDLICLEPVHNHGLTKFM
YKKAYGSCSSKDCKWKIPDSREFELNRTSIDLIKTFHIGERERCPECAGH
FIGENRLTVASPFLIIFGDGNSMHSFPESVILKENDHPLCYDLQFISLKT
ENTKRCHYSSFMKYGDTHWTFFEQFVSGNPIRNFLTLPRDTEQQISFVIY
ICLALLQSFSPTFRQLGKKRSIKNDNQKPNKCKKVIQ
Run BLAST on NCBI

transcript from alignment at scaffold_285:390908..392071

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica)
TTCTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgat GCTGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTA ATGCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTT GGCAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaa aaatgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATC TTTTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGG GGGtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGA GTTTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTAT TCTCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCG ATGTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTC GCGACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGT ATGCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCC AAACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAG AGGAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCG CCGACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAA GCAGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggatttttttt cataaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTG TTAGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGC TGCCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAG AAAAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCA TATTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCT CGAATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCAT ATAATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAG GGTAATCATCCATT

Coding sequence (CDS) from alignment at scaffold_285:390908..392071

>TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica)
CTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgatGC
TGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTAAT
GCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTTGG
CAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaaaa
atgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATCTT
TTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGGGG
GtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGAGT
TTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTATTC
TCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCGAT
GTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTCGC
GACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGTAT
GCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCCAA
ACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAGAG
GAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCGCC
GACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAAGC
AGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggattttttttca
taaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTGTT
AGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGCTG
CCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAGAA
AAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCATA
TTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCTCG
AATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCATAT
AATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAGGG
TAATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036007XLOC_036007Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057148-proteinTCONS_00057148-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057148-exon-scaffold_285-1491911889:390908..392071TCONS_00057148-exon-scaffold_285-1491911889:390908..392071Clytia hemisphaericaexon
TCONS_00057148-exon-scaffold_285-1510915933:390908..392071TCONS_00057148-exon-scaffold_285-1510915933:390908..392071Clytia hemisphaericaexon
TCONS_00057148-exon-scaffold_285-1575043694:390908..392071TCONS_00057148-exon-scaffold_285-1575043694:390908..392071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:390908..392071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.38508 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297196 0.10868 0.0420625 0.0411516 0.300589 0.118765 1.38508 0.491851 0.0626103 0.736753 0.414011 0.0247413 0.222363 0.179609 0.0421894 0.0905514 0.474095 0.514517 0.118472 0.0826484 0 0.0525589 0 0.193625 0.0398857 0.249179 0.0509393 0 0.082466 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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