Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp AATGGATGATTACCCTCAGGACTACGCAGAATTTATTGAAAATGGCGAGC ATATCAATAATTATATGGATAGAATGGGAAATTCCGGTGAGTGGGCCGAT GCTGCCATCATTCGAGCCACGGCAGATGCATTACAAATTGAGATCCATGT AATAAGCTCAAATATGGACCACATCGAAACTTTCACACCACCAGGCCACA CAGAAACAATTTTTCTTGGTCAAGTCATGAACATCCACTACGTTTCCACC AGCAACATCAGGCAGCCCCAAACAATACCATTCGGTGGGGTCACGTCTGA TGGAATAAGTCTAACAGATACTTCGGGAATGAACATCTCTCTAACAtggt tttttaattttatgaaaaaaaatccagtgcTAACCCAAAAAATCAGTGAC TTAAAAGCTACTGCTTCAAAAAAGCTAATGAGGAGTTTTGGGCAATTTCG GGTCGGAAAGTCGGCGGAAGCTAAAAGGTTGTGGTATGAGTTGATAAAGA GTAGGAAACTTCCTCTATCTACGTCATCAGTTAACGCTGCTAATATCAGT GATCTAATTTGTTTGGAACCTGTGCATAATCATGGGCTAACAAAATTTAT GTACAAAAAAGCATACGGATCTTGCAGTTCTAAAGACTGCAAGTGGAAAA TACCTGATAGTCGCGAGTTCGAGCTCAATAGAACATCGATTGACCTAATT AAAACTTTCCACATCGGTGAAAGAGAGAGATGTCCAGAGTGCGCGGGCCA TTTTATTGGTGAGAATAGATTGACGGTAGCTTCTCCCTTCCTTATTATCT TTGGAGATGGAAACTCCATGCATAGTTTCCCTGAGTCagtcattttgaaa gaaaatgatcaCCCCCTGTGCTATGACCTTCAGTTTATCTCACTTAAAAC TGAAAACACTAAAAGATGTCATTATAGCTCGTTTATGAAATATGGTGACA CACACTGGacattttttgaacaatttgtATCTGGAAATCCAATCCGAAAC TTTTTGACATTGCCAAGAGATACGGAACAgcagatttcttttgttattta caTTTGCTTGGCATTACTTCAGTCGTTTTCACCTACATTCCGACAACTAG GCAAAAAACGCAGCatcaaaaatgataatcaaAAGCCAAACAAGTGTAAG AAAGTGATCCAGAA Run BLAST on NCBI protein sequence of TCONS_00057148-protein >TCONS_00057148-protein ID=TCONS_00057148-protein|Name=TCONS_00057148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MDDYPQDYAEFIENGEHINNYMDRMGNSGEWADAAIIRATADALQIEIHV ISSNMDHIETFTPPGHTETIFLGQVMNIHYVSTSNIRQPQTIPFGGVTSD GISLTDTSGMNISLTWFFNFMKKNPVLTQKISDLKATASKKLMRSFGQFR VGKSAEAKRLWYELIKSRKLPLSTSSVNAANISDLICLEPVHNHGLTKFM YKKAYGSCSSKDCKWKIPDSREFELNRTSIDLIKTFHIGERERCPECAGH FIGENRLTVASPFLIIFGDGNSMHSFPESVILKENDHPLCYDLQFISLKT ENTKRCHYSSFMKYGDTHWTFFEQFVSGNPIRNFLTLPRDTEQQISFVIY ICLALLQSFSPTFRQLGKKRSIKNDNQKPNKCKKVIQ Run BLAST on NCBI transcript from alignment at scaffold_285:390908..392071 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica) TTCTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgat
GCTGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTA
ATGCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTT
GGCAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaa
aaatgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATC
TTTTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGG
GGGtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGA
GTTTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTAT
TCTCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCG
ATGTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTC
GCGACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGT
ATGCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCC
AAACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAG
AGGAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCG
CCGACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAA
GCAGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggatttttttt
cataaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTG
TTAGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGC
TGCCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAG
AAAAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCA
TATTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCT
CGAATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCAT
ATAATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAG
GGTAATCATCCATT Coding sequence (CDS) from alignment at scaffold_285:390908..392071 >TCONS_00057148 ID=TCONS_00057148|Name=TCONS_00057148|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_285:390908..392071 (Clytia hemisphaerica) CTGGATCACTTTCTTACACTTGTTTGGCTTttgattatcatttttgatGC TGCGTTTTTTGCCTAGTTGTCGGAATGTAGGTGAAAACGACTGAAGTAAT GCCAAGCAAAtgtaaataacaaaagaaatctgcTGTTCCGTATCTCTTGG CAATGTCAAAAAGTTTCGGATTGGATTTCCAGATacaaattgttcaaaaa atgtCCAGTGTGTGTCACCATATTTCATAAACGAGCTATAATGACATCTT TTAGTGTTTTCAGTTTTAAGTGAGATAAACTGAAGGTCATAGCACAGGGG GtgatcattttctttcaaaatgactGACTCAGGGAAACTATGCATGGAGT TTCCATCTCCAAAGATAATAAGGAAGGGAGAAGCTACCGTCAATCTATTC TCACCAATAAAATGGCCCGCGCACTCTGGACATCTCTCTCTTTCACCGAT GTGGAAAGTTTTAATTAGGTCAATCGATGTTCTATTGAGCTCGAACTCGC GACTATCAGGTATTTTCCACTTGCAGTCTTTAGAACTGCAAGATCCGTAT GCTTTTTTGTACATAAATTTTGTTAGCCCATGATTATGCACAGGTTCCAA ACAAATTAGATCACTGATATTAGCAGCGTTAACTGATGACGTAGATAGAG GAAGTTTCCTACTCTTTATCAACTCATACCACAACCTTTTAGCTTCCGCC GACTTTCCGACCCGAAATTGCCCAAAACTCCTCATTAGCTTTTTTGAAGC AGTAGCTTTTAAGTCACTGATTTTTTGGGTTAgcactggattttttttca taaaattaaaaaaccaTGTTAGAGAGATGTTCATTCCCGAAGTATCTGTT AGACTTATTCCATCAGACGTGACCCCACCGAATGGTATTGTTTGGGGCTG CCTGATGTTGCTGGTGGAAACGTAGTGGATGTTCATGACTTGACCAAGAA AAATTGTTTCTGTGTGGCCTGGTGGTGTGAAAGTTTCGATGTGGTCCATA TTTGAGCTTATTACATGGATCTCAATTTGTAATGCATCTGCCGTGGCTCG AATGATGGCAGCATCGGCCCACTCACCGGAATTTCCCATTCTATCCATAT AATTATTGATATGCTCGCCATTTTCAATAAATTCTGCGTAGTCCTGAGGG TAATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057148-exon-scaffold_285-1491911889:390908..392071 | TCONS_00057148-exon-scaffold_285-1491911889:390908..392071 | Clytia hemisphaerica | exon |
TCONS_00057148-exon-scaffold_285-1510915933:390908..392071 | TCONS_00057148-exon-scaffold_285-1510915933:390908..392071 | Clytia hemisphaerica | exon |
TCONS_00057148-exon-scaffold_285-1575043694:390908..392071 | TCONS_00057148-exon-scaffold_285-1575043694:390908..392071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_285 | supercontig | scaffold_285:390908..392071 . |
Blast
The following BLAST results are available for this feature:
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