TCONS_00057115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057115
Unique NameTCONS_00057115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057115 ID=TCONS_00057115|Name=TCONS_00057115|organism=Clytia hemisphaerica|type=transcript|length=1687bp
GTCCACGCGACCATGTTGCGATGTAAAAGTGACTTAAAGAGTCTTCTGTT
GCAATTGAGTAGTAAGCGGTTTTATTGTTAACGGAGAGAAAAATGCAAGT
GTATTTCAGTTTTACATTAATTCTTTTTTTGGTGCTCNTTTCGTGTCCAC
GCGACCATGTTGCGATGTAAAAGTGACTTAAAGAGTCTTCTGTTGCAATT
GAGTAGTAAGCGGTTTTATTGTTAACGGAGAGAAAAATGCAAGTGTATTT
CAGTTTTACATTAATTCTTTTTTTGGTGCTCTTTTCCGTTCATACCAATT
GTTCGGGGGATGACGATGCAACTGATAGTATAGGAAATGATTTGGATGGA
GAAGATGTGAACGCTGATGGAAATGCCGAAACTAGAGATGAACCGCAGCA
ACAGCAGATCAGAACATCAGAAACAACGCATAAAGCCATCGATGACCGAA
TTTATGATGAGGCATTACATTTACTTAAACAACCAGATGAAATTAGGCTT
GTTCACTCTTATACCTAttcccaaaggaaaatttatgaGCTCGCCAAGAA
GGGTCTAAAAACTCAGGAGATATTTAATCCAGTGAAAAAAACGACTGCCC
CTGAAATAGCTGATGCTGAAAAGAAGATCGTTCCAAAAAAGTCAGATTTG
GAACTGATTGTTAAACACTTTCACCACGTATTAAAAGGAGAAGGAGCACA
TAAAATACATATCAGAGCTCGGATAAAGTTTCATGGTATAACAAGACGTT
TCGTTCAAACCTGGCTTAATCGAAATAAAGAACATACCCAGCACCAACCA
GTTTTTTCAAACAAGGCTCCAATAACACCCGTCGTATCAAAAACGGTCAA
TGGACACCACCAAATTGATCTTGTTAGCATGGAGAATTTTCCCGTTCAAA
TAGGTGACCAGATTTATGTTCAAATCCTATCCGTAATAGACAATTTCACA
AGATTTCTACAACTCAGACCACTAACATCGAAAGAACCGAAGGAATTGTT
ATTACACATCATACAAATTTACAGAACATTTGGCCCTCCTAAGATAGTCC
AGTCGGATAGAGGAACTGAGTTCCGAGGTGAATTAAAGCTTTTCCTCGAA
AGAGTTGGAATTGAAGCTAGAAACAGTCGTGCCTACCATCCGCAGAGTCA
AGGAAAGAGTGAAAGAAGCCATCGTACATGGAAAAATAAGATTCGATATT
GCTTTACCAAAATTGCAGAAGGTGGAGAAAATTGGGTAGAACGTCTTGGA
GAATGTCAAGACCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAA
CAAAACTCCATTCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTG
CCTTGTTTGACACAGCTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAA
GAATATAGTAGCAACGATGACTCCGAGGAAGAATCAGAACTAAACTTACC
TTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTCCAAC
GAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAGACGG
CAACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTG
ATAGGACAGCCAAGACTCCGCGTGATTTGACACAAGG
Run BLAST on NCBI

protein sequence of TCONS_00057115-protein

>TCONS_00057115-protein ID=TCONS_00057115-protein|Name=TCONS_00057115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
MQVYFSFTLILFLVLFSVHTNCSGDDDATDSIGNDLDGEDVNADGNAETR
DEPQQQQIRTSETTHKAIDDRIYDEALHLLKQPDEIRLVHSYTYSQRKIY
ELAKKGLKTQEIFNPVKKTTAPEIADAEKKIVPKKSDLELIVKHFHHVLK
GEGAHKIHIRARIKFHGITRRFVQTWLNRNKEHTQHQPVFSNKAPITPVV
SKTVNGHHQIDLVSMENFPVQIGDQIYVQILSVIDNFTRFLQLRPLTSKE
PKELLLHIIQIYRTFGPPKIVQSDRGTEFRGELKLFLERVGIEARNSRAY
HPQSQGKSERSHRTWKNKIRYCFTKIAEGGENWVERLGECQDQYNTGAHR
SIGKNKTPFELFFGRKPNFDIALFDTAFEGLLGAAENQEYSSNDDSEEES
ELNLPLIVNSNNTQQQQQQQQQQQQQQQQQQQQQQNSNEHQSTLNESFGT
CDLDGNQIDETRSNLENCKTTDRTAKTPRDLTQ
Run BLAST on NCBI

transcript from alignment at scaffold_285:395088..398335-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057115 ID=TCONS_00057115|Name=TCONS_00057115|organism=Clytia hemisphaerica|type=transcript|length=3248bp|location=Sequence derived from alignment at scaffold_285:395088..398335- (Clytia hemisphaerica)
GTCCACGCGACCATGTTGCGATGTAAAAGTGACTTAAAGAGTCTTCTGTT
GCAATTGAGTAGTAAGCGGTTTTATTGTTAACGGAGAGAAAAATGCAAGT
GTATTTCAGTTTTACATTAATTCTTTTTTTGGTGCTCNTTTCGTGTCCAC
GCGACCATGTTGCGATGTAAAAGTGACTTAAAGAGTCTTCTGTTGCAATT
GAGTAGTAAGCGGTTTTATTGTTAACGGAGAGAAAAATGCAAGTGTATTT
CAGTTTTACATTAATTCTTTTTTTGGTGCTCTTTTCCGTTCATACCAATT
GTTCGGGGGATGACGATGCAACTGATAGTATAGGAAATGATTTGGATGGA
GAAGATGTGAACGCTGATGGAAATGCCGAAACTAGAGATGAACCGCAGCA
ACAGCAGATCAGAACATCAGAAACAACGCATAAAGCCATCGATGACCGAA
TTTATGATGAGGCATTACATTTACTTAAACAACCAGATGAAATTAGGCTT
GTTCACTCTTATACCTATTCCCAAAGGAAAATTTATGAGCTCGCCAAGAA
GGGTCTAAAAACTCAGGAGATATTTAATCCAGTGAAAAAAACGACTGCCC
CTGAAATAGCTGATGCTGAAAAGAAGATCGTTCCAAAAAAGTCAGATTTG
GAACTGATTGTTAAACACTTTCACCACGTATTAAAAGGAGAAGGAGCACA
TAAAATACATATCAGAGCTCGGATAAAGTTTCATGGTATAACAAGACGTT
TCGTTCAAACCTGGCTTAATCGAAATAAAGAACATACCCAGCACCAACCA
GTTTTTTCAAACAAGGCTCCAATAACACCCGTCGTATCAAAAACGGTCAA
TGGACACCACCAAATTGATCTTGTTAGCATGGAGAATTTTCCCGTTCAAA
TAGGTGACCAGATTTATGTTCAAATCCTATCCGTAATAGACAATTTCACA
AGATTTCTACAACTCAGACCACTAACATCGAAAGAACCGAAGGAATTGTT
ATTACACATCATACAAATTTACAGGTATTTTTTATGATCAATTACATTAT
AATCATATGTATCTTTGGAGTGTTATACGAACACGCGACTGTTTTAGTTT
AAAAATAAACAAAATCCGCCTTCAAGTACACATATCTTACTTTGAAACCA
ACTAAAGCATCTGACTTTTGGATGGTAGATGTATGATTTTATAGAAAAAA
GCCGTTTCTATGAACTGCTTCTATTTTGGTTCTAGAGTTATTCCGAGTTG
AACCAAAATGGAAGCACCTCTAAATCAGCTTCTTAATTTGAATAAGTCAT
GATAAATCAATTCAATTATCTGACCTTTGTGGTAGGTGTATGATTTTATA
TGATTTTATAGAAAAAAGCCGTTTCTATGAACTGCTTCTATTTTGGTTCC
AGAGTTATTCCGAGTTGAACCAAATTTGACGCACCTTCAAAATATGATTT
CACTATAGTGTCACTTTCCACAGATCTGTCCACAAAAATTTTGCCATTCC
CTCTGATTTATTTAGCTGTAGAATCTGAAATCCTCACCTGTTCATGGGGA
TATAGAATTTATCACTTTATCACTGGCGGGATAGGATTGTAAAGAATTTA
TTGTGAGGTGCTCGAAGTTAGTTTTTACTTTTTCTTTCCAGAACATTTGG
CCCTCCTAAGATAGTCCAGTCGGATAGAGGAACTGAGTTCCGAGGTGAAT
TAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGCTAGAAACAGTCGTGCC
TACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAAGCCATCGTACATGGAA
AAATAAGATTCGATATTGCTTTACCAAAATTGCAGAAGGTGGAGGTATGC
TTTTTATTGTACTGTATCCAAACATATTCAACTATTCTTTTTTACTAAAT
TTAGAAAATAGTTTGAGAGTAAAAGGGCAAAAACGAGAGGTACAGGCAGT
CCACAAACTTACTACATCTATAGATAACATATGCTTTTTTCATAGCCAAT
AACATTTCTTACTATAACTTATTTAATCTTCTCCTAGAAAATTGGGTAGA
ACGTCTTGGAGAATGTCAAGACCAATACAACACTGGTGCGCATCGTTCCA
TTGGAAAAAACAAAACTCCATTCGAGTTATTCTTTGGACGAAAACCAAAT
TTCGATATTGCCTTGTTTGACACAGGTAGATTTTTTTTTAAATTCTATTT
TCGATTTTTATGAGTCTCCGGATGCGCTGCTGGAGGTTTAAAAGTAAAGC
TCGAAGAATAGATGACTTCGTTCCTACTTTTCAAGCAAACAAAATTGAAA
GAACACAAATCAAACATCAAAGTATTTGCGTTTTTTCGTTTTTCTTGATA
ATGTTTAGCAAATTTCTTGAAAATTTTATAATTTAATTTCAGCTTTTGAA
GGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGCAACGATGACTC
CGAGGAAGGTATTCATTTGATTCTAAGTGATTTTTATAGCAAAACAAGAA
AGCCTAAGTGGCGTTATGGCCCAGCAGTGTTGGTAGTGTCAACATACTTT
CCATTGCAAAGTCGCCATACAACTCAATTTACAGGGGTGAATTTTTTCGA
TATATAGGGAAACTCGAATCCGGTGAGCAATTTGTAATGAATTAATTAGG
TGCTTTAGTTCTTTTGAAAGAAATATTAAACTGGAAGTTTTAACACTAAC
TCTTCACTTTGGAATTTACAGAATCAGAACTAAACTTACCTTTGATTGTC
AATTCAAACAATACACAACAACAACAACAGCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAAAATTCCAACGAACACCAAT
CGACCCTAAACGAATCATTTGGTACATGTGACTTAGACGGTTTGTTTCAT
AAGTTTTTCCGTGGGGACTAAAGATCCGAAAATATGAACACGTTTCGTGG
GAACATTTCCATTGCTCAAGCTACTTTGATAATTTACGAACTAAATATAC
ATACTCTAAAACTGTCGGATTGACTTTCAATGATTTAAAGAAAAGTATCA
AAACATGAAGGTGCTTTCCACGAATTTTAGCACGACTTGTACGTCGTCAG
AAGCACATATCATTATCAATTTCGCAAGATAATTCTTATAAAATCTTCTT
TTCTTAACAGGCAACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTG
CAAAACCACTGATAGGACAGCCAAGACTCCGCGTGATTTGACACAAGG

Coding sequence (CDS) from alignment at scaffold_285:395088..398335-

>TCONS_00057115 ID=TCONS_00057115|Name=TCONS_00057115|organism=Clytia hemisphaerica|type=CDS|length=8694bp|location=Sequence derived from alignment at scaffold_285:395088..398335- (Clytia hemisphaerica)
GCAACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACT
GATAGGACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAAC
TTACCTTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATT
CCAACGAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTA
GACGCTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAG
CAACGATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTC
AAGACCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACT
CCATTCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTT
TGACACAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAAC
TGAGTTCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAG
CTAGAAACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGA
AGCCATCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGC
AGAAGGTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTG
GTGCTCTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGA
TAGTATAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATG
CCGAAACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACA
ACGCATAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACT
TAAACAACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAA
GGAAAATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTT
AATCCAGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAA
GATCGTTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACC
ACGTATTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATA
AAGTTTCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAA
TAAAGAACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAA
CACCCGTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTT
AGCATGGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAAT
CCTATCCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAA
CATCGAAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAGG
CAACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTG
ATAGGACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAACT
TACCTTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTC
CAACGAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAG
ACGCTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGC
AACGATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTCA
AGACCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACTC
CATTCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTTT
GACACAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAACT
GAGTTCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGC
TAGAAACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAA
GCCATCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGCA
GAAGGTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTGG
TGCTCTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGAT
AGTATAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATGC
CGAAACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACAA
CGCATAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACTT
AAACAACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAAG
GAAAATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTTA
ATCCAGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAAG
ATCGTTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACCA
CGTATTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATAA
AGTTTCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAAT
AAAGAACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAAC
ACCCGTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTTA
GCATGGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAATC
CTATCCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAAC
ATCGAAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAGGC
AACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTGA
TAGGACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAACTT
ACCTTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTCC
AACGAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAGA
CGCTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGCA
ACGATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTCAA
GACCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACTCC
ATTCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTTTG
ACACAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAACTG
AGTTCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGCT
AGAAACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAAG
CCATCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGCAG
AAGGTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTGGT
GCTCTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGATA
GTATAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATGCC
GAAACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACAAC
GCATAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACTTA
AACAACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAAGG
AAAATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTTAA
TCCAGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAAGA
TCGTTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACCAC
GTATTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATAAA
GTTTCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAATA
AAGAACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAACA
CCCGTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTTAG
CATGGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAATCC
TATCCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAACA
TCGAAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAGGCA
ACCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTGAT
AGGACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAACTTA
CCTTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTCCA
ACGAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAGAC
GCTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGCAA
CGATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTCAAG
ACCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACTCCA
TTCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTTTGA
CACAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAACTGA
GTTCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGCTA
GAAACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAAGC
CATCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGCAGA
AGGTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTGGTG
CTCTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGATAG
TATAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATGCCG
AAACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACAACG
CATAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACTTAA
ACAACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAAGGA
AAATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTTAAT
CCAGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAAGAT
CGTTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACCACG
TATTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATAAAG
TTTCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAATAA
AGAACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAACAC
CCGTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTTAGC
ATGGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAATCCT
ATCCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAACAT
CGAAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAGGCAA
CCAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTGATA
GGACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAACTTAC
CTTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTCCAA
CGAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAGACG
CTTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGCAAC
GATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTCAAGA
CCAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACTCCAT
TCGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTTTGAC
ACAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAACTGAG
TTCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGCTAG
AAACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAAGCC
ATCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGCAGAA
GGTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTGGTGC
TCTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGATAGT
ATAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATGCCGA
AACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACAACGC
ATAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACTTAAA
CAACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAAGGAA
AATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTTAATC
CAGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAAGATC
GTTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACCACGT
ATTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATAAAGT
TTCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAATAAA
GAACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAACACC
CGTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTTAGCA
TGGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAATCCTA
TCCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAACATC
GAAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAGGCAAC
CAAATCGACGAAACTCGCTCAAACTTAGAAAATTGCAAAACCACTGATAG
GACAGCCAAGACTCCGCGTGATTTGACACAAAATCAGAACTAAACTTACC
TTTGATTGTCAATTCAAACAATACACAACAACAACAACAGCAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAAAATTCCAAC
GAACACCAATCGACCCTAAACGAATCATTTGGTACATGTGACTTAGACGC
TTTTGAAGGACTTCTTGGCGCAGCTGAAAACCAAGAATATAGTAGCAACG
ATGACTCCGAGGAAGAAAATTGGGTAGAACGTCTTGGAGAATGTCAAGAC
CAATACAACACTGGTGCGCATCGTTCCATTGGAAAAAACAAAACTCCATT
CGAGTTATTCTTTGGACGAAAACCAAATTTCGATATTGCCTTGTTTGACA
CAGAACATTTGGCCCTCCTAAGATAGTCCAGTCGGATAGAGGAACTGAGT
TCCGAGGTGAATTAAAGCTTTTCCTCGAAAGAGTTGGAATTGAAGCTAGA
AACAGTCGTGCCTACCATCCGCAGAGTCAAGGAAAGAGTGAAAGAAGCCA
TCGTACATGGAAAAATAAGATTCGATATTGCTTTACCAAAATTGCAGAAG
GTGGAGATGCAAGTGTATTTCAGTTTTACATTAATTCTTTTTTTGGTGCT
CTTTTCCGTTCATACCAATTGTTCGGGGGATGACGATGCAACTGATAGTA
TAGGAAATGATTTGGATGGAGAAGATGTGAACGCTGATGGAAATGCCGAA
ACTAGAGATGAACCGCAGCAACAGCAGATCAGAACATCAGAAACAACGCA
TAAAGCCATCGATGACCGAATTTATGATGAGGCATTACATTTACTTAAAC
AACCAGATGAAATTAGGCTTGTTCACTCTTATACCTATTCCCAAAGGAAA
ATTTATGAGCTCGCCAAGAAGGGTCTAAAAACTCAGGAGATATTTAATCC
AGTGAAAAAAACGACTGCCCCTGAAATAGCTGATGCTGAAAAGAAGATCG
TTCCAAAAAAGTCAGATTTGGAACTGATTGTTAAACACTTTCACCACGTA
TTAAAAGGAGAAGGAGCACATAAAATACATATCAGAGCTCGGATAAAGTT
TCATGGTATAACAAGACGTTTCGTTCAAACCTGGCTTAATCGAAATAAAG
AACATACCCAGCACCAACCAGTTTTTTCAAACAAGGCTCCAATAACACCC
GTCGTATCAAAAACGGTCAATGGACACCACCAAATTGATCTTGTTAGCAT
GGAGAATTTTCCCGTTCAAATAGGTGACCAGATTTATGTTCAAATCCTAT
CCGTAATAGACAATTTCACAAGATTTCTACAACTCAGACCACTAACATCG
AAAGAACCGAAGGAATTGTTATTACACATCATACAAATTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035976XLOC_035976Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057115-proteinTCONS_00057115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057115-exon-scaffold_285-1575043694:397312..398335TCONS_00057115-exon-scaffold_285-1575043694:397312..398335Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1575043694:396492..396694TCONS_00057115-exon-scaffold_285-1575043694:396492..396694Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1575043694:396161..396298TCONS_00057115-exon-scaffold_285-1575043694:396161..396298Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1575043694:395878..395943TCONS_00057115-exon-scaffold_285-1575043694:395878..395943Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1575043694:395447..395614TCONS_00057115-exon-scaffold_285-1575043694:395447..395614Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1575043694:395088..395175TCONS_00057115-exon-scaffold_285-1575043694:395088..395175Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:397312..398335TCONS_00057115-exon-scaffold_285-1510915933:397312..398335Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:396492..396694TCONS_00057115-exon-scaffold_285-1510915933:396492..396694Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:396161..396298TCONS_00057115-exon-scaffold_285-1510915933:396161..396298Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:395878..395943TCONS_00057115-exon-scaffold_285-1510915933:395878..395943Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:395447..395614TCONS_00057115-exon-scaffold_285-1510915933:395447..395614Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1510915933:395088..395175TCONS_00057115-exon-scaffold_285-1510915933:395088..395175Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:397312..398335TCONS_00057115-exon-scaffold_285-1491911889:397312..398335Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:396492..396694TCONS_00057115-exon-scaffold_285-1491911889:396492..396694Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:396161..396298TCONS_00057115-exon-scaffold_285-1491911889:396161..396298Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:395878..395943TCONS_00057115-exon-scaffold_285-1491911889:395878..395943Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:395447..395614TCONS_00057115-exon-scaffold_285-1491911889:395447..395614Clytia hemisphaericaexon
TCONS_00057115-exon-scaffold_285-1491911889:395088..395175TCONS_00057115-exon-scaffold_285-1491911889:395088..395175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:395088..398335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.401782	0.17618	0.2286	0.192676	0.163568	0.076739	1.01227	0.115566	0.106889	0.787338	0.29183	0.0479594	0.190569	0.166487	0.207509	0.210936	0.306482	0.352086	0.10245	0.293753	0.256616	0.307134	0.256424	0.285872	0.103247	0.322421	0.0337337	0.0370019	0.0986742	0.133487
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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