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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057117 ID=TCONS_00057117|Name=TCONS_00057117|organism=Clytia hemisphaerica|type=transcript|length=1722bp
CAGCACCGCCTTAACAGAAGAATTGATGAGTTTAGAAGTGTATGCTAAGC
AGGCAAAAGCTGAATCACTCAGTTTTCTACGAACAGGGGAACAAAAATCT
ATGAGGTACATATTCGTTACCGAAGATGACCTGAAGAAAGGTCAAGAAAT
TGACTCGCTTAAAAAGagTCAAATTGAAGCCAAAATTGTGGAAATCTTGG
AAGAACGTAACGACCAGGATTTATATGAGAAATTCCATGAAAATGTATGt
ggcaagaaaaagaaaatgtacaaaaaCTTTCTGAAGAACCTGAACGGATT
TCCTGTTGTCGACGATGTTGTCGATATGGATGTTGAGCAATAATTTTGTA
GCAGATATTTCACTGTTTTTCTTAATCAATATATTAAAATAGAAACCTAC
CTTTCCGACAGCAACCTTGAGACGCTGCTCAAACAGTTTGGAGTCTGGTT
CTTTCTTTGATCGCCACCTCTTTTGCACCAAACGTCTTTTTCCTGAAATT
AGATGCAAATTATAAAATTACATCTCATGTCAAAAAGATCATGCTTAAGG
CATCAACAATAACCTCCGAGACCCCAAGTCCACAAAAACTGTTAAATTCG
TTGTTCCAagacaggataagaacaatttcgaGGCTCAAACTGGCAACTAA
AGTACTGTAAACAGCAAAACCCTATCTACAATCGGGAATTTTGATAAACT
TGTTGTTCATTTCAACAGTGAAAATTCTTACCCAAGTGAAACCTTAGGAC
CTCGAAAATCAGACCCCGTGAAATGCAACTATTTTCAGAGTGACCCTGGT
GGTTTTCAaaactgagacaggggtgtaaagtAAACTTCTAGCCGATATCA
ATAAATTTATAATGACACTGATTCTTAACGCCCTCCTTTTAGCTTGCGGT
ACACAAGAAATTTAAATGCCTTTTGTGACGCCCCTATCTCATAGCCACGT
TGGAGCCCCCTTTTAGGGCACATCTGGAAAAAAAACGCCAGTGAGAATAA
AGCTCAGAAATCCTAAACTGCACTCCTCTTCTGTTTCCAGTAAGTACAAA
CAAAACCCGTTGGGTCACGGATATATCGGATATACAAGATGAATTATTTT
AGTACCCCCTGGTTATGGTCAAATGGTCTATCAAATTATTTCCTTCAAAC
TGACGAGGCAAGCTAGATAAAGATTAAATATTTCGCTTTGTTATTAGAAG
TAAAACAATGTAACCATTACAAATCAGTTAGAAtgcaaaaattcaacaaa
agaaTACCTTTGTAGACTTTTGCTCTTGTCAACTtaactttcaacaaatt
tcccgTCATCATGGAAGCAGCCACTCATACAACTCTCACAcagtaaaatg
taaaaatttcttCATGATGTACTTACATAATTTTTATGCATATCCACGAA
AGAAATGGACTTCGTGTTTTCCTTTGTTAAACGTAATAAAATACTTACCA
TTGTTTAAAGAATGAGTTCTCGTAATCACTTGGGAATATAATTACTACTT
ACATTGTGTTTACGTCATATTTCTCATCTCTTCACTTTTTCTACCGTGTA
GGAGTGCCAAACATGAGATTTTTATAaggaagtttgaaaaaactattttc
aatattttgctcaatttttcgattGCAAGTTGTGGGGTAGCAGAAATATA
TATCAATGTGTTCCTTATAAGAGCCGCTAAACGAATAtcgtatttttgtt
ttcaccaTGACGTGTTATTGAA Run BLAST on NCBI protein sequence of TCONS_00057117-protein >TCONS_00057117-protein ID=TCONS_00057117-protein|Name=TCONS_00057117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
STALTEELMSLEVYAKQAKAESLSFLRTGEQKSMRYIFVTEDDLKKGQEI
DSLKKSQIEAKIVEILEERNDQDLYEKFHENVCGKKKKMYKNFLKNLNGF
PVVDDVVDMDVEQ Run BLAST on NCBI transcript from alignment at scaffold_285:424188..426373- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057117 ID=TCONS_00057117|Name=TCONS_00057117|organism=Clytia hemisphaerica|type=transcript|length=2186bp|location=Sequence derived from alignment at scaffold_285:424188..426373- (Clytia hemisphaerica)
CAGCACCGCCTTAACAGAAGAATTGATGAGTTTAGAAGTGTATGCTAAGC
AGGCAAAAGCTGAATCACTCAGTTTTCTACGAACAGGGGAACAAAAATCT
ATGAGGTAGGTATGCCTAACTACTGAAAAATTGAAAAAATATCATAATTG
ACTTATATGTTTTCTATAATCAAGACCGCACCTAGCAATTTTCCCTCCCT
TCCAGATCTGATGAGTTTTTTTTCGCCTATAGGTACATATTCGTTACCGA
AGATGACCTGAAGAAAGGTCAAGAAATTGACTCGCTTAAAAAGAGGTAAA
TTTCAATTTTGCTTTGCATCATAAGTGGTCTAAGTGTCGACTCAATATTA
AATAAAGTCTTAATTAAAAAGAATACCTAGCAACGTTTACTCTGTATCTC
ACGATTTTCGTTTCGTTTTGAATTTTGAAATTAGCCGTAGATACCGGGTG
TACAGGCAAAGCAACAGTACGCTAAGTTGTAAACTTATTCCAGCCTTTAC
AACAATACAAAACTAAACCTAGGACATGTGTGTTGTAAAATCAGTATCTA
ATGAGTGACTATCTACACTAGATATCTACAACAACTGCAAAAACCTGTGC
ACTATAAACAAGAACCAATATTGATATTTTAGTCAAATTGAAGCCAAAAT
TGTGGAAATCTTGGAAGAACGTAACGACCAGGATTTATATGAGAAATTCC
ATGAAAATGTATGTGGCAAGAAAAAGAAAATGTACAAAAACTTTCTGAAG
AACCTGAACGGATTTCCTGTTGTCGACGATGTTGTCGATATGGATGTTGA
GCAATAATTTTGTAGCAGATATTTCACTGTTTTTCTTAATCAATATATTA
AAATAGAAACCTACCTTTCCGACAGCAACCTTGAGACGCTGCTCAAACAG
TTTGGAGTCTGGTTCTTTCTTTGATCGCCACCTCTTTTGCACCAAACGTC
TTTTTCCTGAAATTAGATGCAAATTATAAAATTACATCTCATGTCAAAAA
GATCATGCTTAAGGCATCAACAATAACCTCCGAGACCCCAAGTCCACAAA
AACTGTTAAATTCGTTGTTCCAAGACAGGATAAGAACAATTTCGAGGCTC
AAACTGGCAACTAAAGTACTGTAAACAGCAAAACCCTATCTACAATCGGG
AATTTTGATAAACTTGTTGTTCATTTCAACAGTGAAAATTCTTACCCAAG
TGAAACCTTAGGACCTCGAAAATCAGACCCCGTGAAATGCAACTATTTTC
AGAGTGACCCTGGTGGTTTTCAAAACTGAGACAGGGGTGTAAAGTAAACT
TCTAGCCGATATCAATAAATTTATAATGACACTGATTCTTAACGCCCTCC
TTTTAGCTTGCGGTACACAAGAAATTTAAATGCCTTTTGTGACGCCCCTA
TCTCATAGCCACGTTGGAGCCCCCTTTTAGGGCACATCTGGAAAAAAAAC
GCCAGTGAGAATAAAGCTCAGAAATCCTAAACTGCACTCCTCTTCTGTTT
CCAGTAAGTACAAACAAAACCCGTTGGGTCACGGATATATCGGATATACA
AGATGAATTATTTTAGTACCCCCTGGTTATGGTCAAATGGTCTATCAAAT
TATTTCCTTCAAACTGACGAGGCAAGCTAGATAAAGATTAAATATTTCGC
TTTGTTATTAGAAGTAAAACAATGTAACCATTACAAATCAGTTAGAATGC
AAAAATTCAACAAAAGAATACCTTTGTAGACTTTTGCTCTTGTCAACTTA
ACTTTCAACAAATTTCCCGTCATCATGGAAGCAGCCACTCATACAACTCT
CACACAGTAAAATGTAAAAATTTCTTCATGATGTACTTACATAATTTTTA
TGCATATCCACGAAAGAAATGGACTTCGTGTTTTCCTTTGTTAAACGTAA
TAAAATACTTACCATTGTTTAAAGAATGAGTTCTCGTAATCACTTGGGAA
TATAATTACTACTTACATTGTGTTTACGTCATATTTCTCATCTCTTCACT
TTTTCTACCGTGTAGGAGTGCCAAACATGAGATTTTTATAAGGAAGTTTG
AAAAAACTATTTTCAATATTTTGCTCAATTTTTCGATTGCAAGTTGTGGG
GTAGCAGAAATATATATCAATGTGTTCCTTATAAGAGCCGCTAAACGAAT
ATCGTATTTTTGTTTTCACCATGACGTGTTATTGAA Coding sequence (CDS) from alignment at scaffold_285:424188..426373- >TCONS_00057117 ID=TCONS_00057117|Name=TCONS_00057117|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_285:424188..426373- (Clytia hemisphaerica)
TCAAATTGAAGCCAAAATTGTGGAAATCTTGGAAGAACGTAACGACCAGG
ATTTATATGAGAAATTCCATGAAAATGTATGTGGCAAGAAAAAGAAAATG
TACAAAAACTTTCTGAAGAACCTGAACGGATTTCCTGTTGTCGACGATGT
TGTCGATATGGATGTTGAGCAATAAGTACATATTCGTTACCGAAGATGAC
CTGAAGAAAGGTCAAGAAATTGACTCGCTTAAAAAGAGAGCACCGCCTTA
ACAGAAGAATTGATGAGTTTAGAAGTGTATGCTAAGCAGGCAAAAGCTGA
ATCACTCAGTTTTCTACGAACAGGGGAACAAAAATCTATGAGTCAAATTG
AAGCCAAAATTGTGGAAATCTTGGAAGAACGTAACGACCAGGATTTATAT
GAGAAATTCCATGAAAATGTATGTGGCAAGAAAAAGAAAATGTACAAAAA
CTTTCTGAAGAACCTGAACGGATTTCCTGTTGTCGACGATGTTGTCGATA
TGGATGTTGAGCAATAAGTACATATTCGTTACCGAAGATGACCTGAAGAA
AGGTCAAGAAATTGACTCGCTTAAAAAGAGAGCACCGCCTTAACAGAAGA
ATTGATGAGTTTAGAAGTGTATGCTAAGCAGGCAAAAGCTGAATCACTCA
GTTTTCTACGAACAGGGGAACAAAAATCTATGAGTCAAATTGAAGCCAAA
ATTGTGGAAATCTTGGAAGAACGTAACGACCAGGATTTATATGAGAAATT
CCATGAAAATGTATGTGGCAAGAAAAAGAAAATGTACAAAAACTTTCTGA
AGAACCTGAACGGATTTCCTGTTGTCGACGATGTTGTCGATATGGATGTT
GAGCAATAAGTACATATTCGTTACCGAAGATGACCTGAAGAAAGGTCAAG
AAATTGACTCGCTTAAAAAGAGAGCACCGCCTTAACAGAAGAATTGATGA
GTTTAGAAGTGTATGCTAAGCAGGCAAAAGCTGAATCACTCAGTTTTCTA
CGAACAGGGGAACAAAAATCTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057117-exon-scaffold_285-1575043694:426269..426373 | TCONS_00057117-exon-scaffold_285-1575043694:426269..426373 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1575043694:426079..426141 | TCONS_00057117-exon-scaffold_285-1575043694:426079..426141 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1575043694:424188..425741 | TCONS_00057117-exon-scaffold_285-1575043694:424188..425741 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1510915933:426269..426373 | TCONS_00057117-exon-scaffold_285-1510915933:426269..426373 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1510915933:426079..426141 | TCONS_00057117-exon-scaffold_285-1510915933:426079..426141 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1510915933:424188..425741 | TCONS_00057117-exon-scaffold_285-1510915933:424188..425741 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1491911889:426269..426373 | TCONS_00057117-exon-scaffold_285-1491911889:426269..426373 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1491911889:426079..426141 | TCONS_00057117-exon-scaffold_285-1491911889:426079..426141 | Clytia hemisphaerica | exon |
| TCONS_00057117-exon-scaffold_285-1491911889:424188..425741 | TCONS_00057117-exon-scaffold_285-1491911889:424188..425741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:424188..426373 - |
Blast
The following BLAST results are available for this feature:
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