Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=transcript|length=657bp AACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAA ATCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAG TTTAAACGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTAC CTTCTTCGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAG CTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTT GATGGACAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCAC TTCGATGGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATG TCAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGA TCAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGAC TGACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCA TATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCG AAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGA CTTCCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgcTAC GGTTGCA Run BLAST on NCBI protein sequence of TCONS_00057078-protein >TCONS_00057078-protein ID=TCONS_00057078-protein|Name=TCONS_00057078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
TTWASQPKAMSLKGIGNLMVTSAVELAGISYPKFKRFAHALNLKVMGKST FFDLREIRETYKEHHEAVIKEVNARNKLVSLSVDGQCDSPGFNATYCTVT SMDVDSNKILDFKVVNVKESKNSQGMEKEGFIRSILQLIDELTDLKVIST DRNTQIKKLMATDPRFIWLLQQFDPWHMAKGFSKKIIKASKKKGILFVFD FHVY Run BLAST on NCBI transcript from alignment at scaffold_285:484928..486931+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at scaffold_285:484928..486931+ (Clytia hemisphaerica) AACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTAAAAACA
CTGGAAACGATGTAACGACACATACGTTACGAAATTGTCAACAGTCTGAA
ATTCTTTGATTCAAACTCTGAATAGTCTCGTTTTAAGGATATTCTCAATA
TTGTATTCTCAATTTCAGGTATCGGAAATCTGATGGTTACTTCGGCAGTT
GAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACACGCATT
AAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAGGTTAGA
AAGTTACTTATTAATTAAATACACAGAATATTTTAGACCTAGAAATAATG
ATTTTATGTTACTTTCAGttcagaattattttaaaattgtacGATAACCA
TTCTCATTTCAGGTAAACATCTCTTCCCAGAAATACGTGAAACATATAAA
GAACATCACGAAGCTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGT
TTCACTCAGTGTTGATGGACAGTGCGATAGCCCTGGTTTCAACGCGACAT
ACTGCACTGTCACTTCGATGGATGTTGATTCGAACAAAATCTTGGATTTT
AAAGTGGTAAATGTCAAGGAAAGCAAAAATTCACAAGGTTCGATTTATAA
ATCTACTAAATTACTCAACATGATAATGAAAAGGACACGTGtctccttca
aaacaatttgaatCAATACTTCCACCAGGATAACAAGATATGCAATTGAT
CTACCAAACTAGGTCAGCGTGTTTCAAACACACTGTTGGCGATCGCTTAT
TTCCGACAAAATCATCGGAGAAAGAACCTTCTGTAGTGTTCACTAAGAAA
TTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAGGGGATGGGATATAgcctgaaaaaaatttaaaatctctcCTATT
CAGACAAAATGTAAGGAAACTAATGAGTTTATAAAGGTAAGCGAGTCAAA
cattcactttcgatttcaaaaacgagATTTGACTTGTATATCTACACTGT
TAAAATCGCCCTCAGGCGATCGataaatatataatttttataaaatactt
catatatttcatattttcaaggAATGGAGAAAGAGGGATTTATTAGATCA
ATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACTGA
CCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCATAT
GGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGAAG
AAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGACTT
CCATGTATATTGAACGACGAACCAgtaatttttcagcaaaatgcTACGGT
TGCA Coding sequence (CDS) from alignment at scaffold_285:484928..486931+ >TCONS_00057078 ID=TCONS_00057078|Name=TCONS_00057078|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_285:484928..486931+ (Clytia hemisphaerica) ACCACATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAAA TCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAGT TTAAACGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTACC TTCTTCGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAGC TGTCATTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTTG ATGGACAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCACT TCGATGGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATGT CAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGAT CAATCTTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACT GACCGCAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCAT ATGGTTACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGA AGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGAC TTCCATGTATATTGAACCACATGGGCTTCACAACCCAAGGCAATGTCTTT GAAAGGTATCGGAAATCTGATGGTTACTTCGGCAGTTGAGCTGGCTGGTA TATCATACCCCAAGTTTAAACGATTTGCACACGCATTAAACTTAAAAGTG ATGGGAAAAAGTACCTTCTTCGATTTAAGAGAAATACGTGAAACATATAA AGAACATCACGAAGCTGTCATTAAGGAGGTCAATGCACGAAATAAGCTCG TTTCACTCAGTGTTGATGGACAGTGCGATAGCCCTGGTTTCAACGCGACA TACTGCACTGTCACTTCGATGGATGTTGATTCGAACAAAATCTTGGATTT TAAAGTGGTAAATGTCAAGGAAAGCAAAAATTCACAAGgAATGGAGAAAG AGGGATTTATTAGATCAATCTTGCAGCTTATTGACGAGTTGACCGATCTC AAAGTAATCTCGACTGACCGCAACACCCAGATCAAAAAATTGATGGCAAC TGACCCCCGGTTCATATGGTTACTTCAACAATTCGATCCATGGCATATGG CAAAAGGTTTTTCGAAGAAAATAATCAAGGCTTCTAAAAAGAAAGGTATC TTATTCGTTTTTGACTTCCATGTATATTGAACCACATGGGCTTCACAACC CAAGGCAATGTCTTTGAAAGGTATCGGAAATCTGATGGTTACTTCGGCAG TTGAGCTGGCTGGTATATCATACCCCAAGTTTAAACGATTTGCACACGCA TTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTTCGATTTAAGAGAAAT ACGTGAAACATATAAAGAACATCACGAAGCTGTCATTAAGGAGGTCAATG CACGAAATAAGCTCGTTTCACTCAGTGTTGATGGACAGTGCGATAGCCCT GGTTTCAACGCGACATACTGCACTGTCACTTCGATGGATGTTGATTCGAA CAAAATCTTGGATTTTAAAGTGGTAAATGTCAAGGAAAGCAAAAATTCAC AAGgAATGGAGAAAGAGGGATTTATTAGATCAATCTTGCAGCTTATTGAC GAGTTGACCGATCTCAAAGTAATCTCGACTGACCGCAACACCCAGATCAA AAAATTGATGGCAACTGACCCCCGGTTCATATGGTTACTTCAACAATTCG ATCCATGGCATATGGCAAAAGGTTTTTCGAAGAAAATAATCAAGGCTTCT AAAAAGAAAGGTATCTTATTCGTTTTTGACTTCCATGTATATTGAACCAC ATGGGCTTCACAACCCAAGGCAATGTCTTTGAAAGGTATCGGAAATCTGA TGGTTACTTCGGCAGTTGAGCTGGCTGGTATATCATACCCCAAGTTTAAA CGATTTGCACACGCATTAAACTTAAAAGTGATGGGAAAAAGTACCTTCTT CGATTTAAGAGAAATACGTGAAACATATAAAGAACATCACGAAGCTGTCA TTAAGGAGGTCAATGCACGAAATAAGCTCGTTTCACTCAGTGTTGATGGA CAGTGCGATAGCCCTGGTTTCAACGCGACATACTGCACTGTCACTTCGAT GGATGTTGATTCGAACAAAATCTTGGATTTTAAAGTGGTAAATGTCAAGG AAAGCAAAAATTCACAAGgAATGGAGAAAGAGGGATTTATTAGATCAATC TTGCAGCTTATTGACGAGTTGACCGATCTCAAAGTAATCTCGACTGACCG CAACACCCAGATCAAAAAATTGATGGCAACTGACCCCCGGTTCATATGGT TACTTCAACAATTCGATCCATGGCATATGGCAAAAGGTTTTTCGAAGAAA ATAATCAAGGCTTCTAAAAAGAAAGGTATCTTATTCGTTTTTGACTTCCA TGTATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057078-exon-scaffold_285-1491911889:484928..484968 | TCONS_00057078-exon-scaffold_285-1491911889:484928..484968 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1510915933:484928..484968 | TCONS_00057078-exon-scaffold_285-1510915933:484928..484968 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1575043694:484928..484968 | TCONS_00057078-exon-scaffold_285-1575043694:484928..484968 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1491911889:485096..485221 | TCONS_00057078-exon-scaffold_285-1491911889:485096..485221 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1510915933:485096..485221 | TCONS_00057078-exon-scaffold_285-1510915933:485096..485221 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1575043694:485096..485221 | TCONS_00057078-exon-scaffold_285-1575043694:485096..485221 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1491911889:485358..485564 | TCONS_00057078-exon-scaffold_285-1491911889:485358..485564 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1510915933:485358..485564 | TCONS_00057078-exon-scaffold_285-1510915933:485358..485564 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1575043694:485358..485564 | TCONS_00057078-exon-scaffold_285-1575043694:485358..485564 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1491911889:486649..486931 | TCONS_00057078-exon-scaffold_285-1491911889:486649..486931 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1510915933:486649..486931 | TCONS_00057078-exon-scaffold_285-1510915933:486649..486931 | Clytia hemisphaerica | exon |
TCONS_00057078-exon-scaffold_285-1575043694:486649..486931 | TCONS_00057078-exon-scaffold_285-1575043694:486649..486931 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_285 | supercontig | scaffold_285:484928..486931 + |
Blast
The following BLAST results are available for this feature:
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