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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057123 ID=TCONS_00057123|Name=TCONS_00057123|organism=Clytia hemisphaerica|type=transcript|length=1150bp
CATACTGATGAGCCCTGACTATTGGGCGAAACAGACCTTTCCCtttattt
ctatttattttcagattaaaaaataaaggagtaCCTAAGAAATATCAACT
AATCAATCAACTAATCAATAAATGTTAATACATCCTTATCCATAAAGTGA
AGTGGTGGAATAATCCTGGCAAATTCCGGAAAGATACCAACGACTATGGC
TAATAACGAAGACAAACAATTATGGAGAGAACACGCTGAACAATTGAAGC
GAAAAAGAGGAAAACAAGGTGGAAAACAAGAAACAAGCAACAAAAAGAAT
GGAGCAGGCGCTAATATAATAAAGGAGCAGGAAATGACTGTTTAAAGACT
CGAATCCGAAACTGAAGGAACAGCCAAGAAGTACAAAAGGTGTGAAGCTG
AAGTATTTGTTGCATACCCTTATGCCGAAGTATCAATCGAAAATATGAGG
AGTGCATGTACAGCACACTTCAAAAAATAATGGGGAAATTTGAAAAGTGT
GACATTTTTAGATCACAGAATGGACCTTCGTGCATTAAATTATCACAGAT
CAAATCCTTTGAAGTAATGTATGTCAGGTTTGTCACGGATCAAAACTTTC
TATCCCCGTCCGTAACCAAGTACTTTCTCAAGATGCCCCGACGGAGTTCT
CTGCTTACTTGCTTGCTTAGAAGCTCAGGCCTGAACAGGCCCCTTGCTCC
TCATGACCAGGTCTTTCCAAGCATGACGGTCCAGGGCAACTTGCTTAGTG
TAGAATCAAACAACCAATCATTGTCCATCATAACTTCAGCAACACcatca
aaaaaacttaaacTCCCCTCTAAAGATACATCAAAGAATACCCGAAAAGC
ATCTCAATCTCAACCATGATGAAACTGGGAACGGACAGAACGGCACTGAA
AATCCACCAATCACAGTTAATATCCAAGAATTGAATGTATCCGAGATGAA
ATGGAGTTATCCCACTCCAAAAGAATTTACCGTATCTGATGAACCGATGA
CCCAAGGAGGCTTTAAAAAGTCTTTAAGGTTGTGGAGACTGACtctaaaa
aaactatttttttaaaaCCTTCTCGCCTGACGTTTTAACGACTATGGAAA
ATGTTAATAAAGTAGTTTCCTGAAGGAAACCAAGGAAAGTTCGTCAAAGA Run BLAST on NCBI transcript from alignment at scaffold_285:524242..527059- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057123 ID=TCONS_00057123|Name=TCONS_00057123|organism=Clytia hemisphaerica|type=transcript|length=2818bp|location=Sequence derived from alignment at scaffold_285:524242..527059- (Clytia hemisphaerica)
CATACTGATGAGCCCTGACTATTGGGCGAAACAGACCTTTCCCTTTATTT
CTATTTATTTTCAGATTAAAAAATAAAGGAGTACCTAAGAAATATCAACT
AATCAATCAACTAATCAATAAATGTTAATACATCCTTATCCATAAAGTGA
AGTGGTGGAATAATCCTGGCAAATTCCGGAAAGATACCAACGACTGTAAG
TTAATTTTCCTTTCTTTTTTACTATTTATTGCTTTCCTGATGCACAGAAC
AAGGCACTTGGAGTCTCTTAGAGGGGAATCACAATACAAAAAAGGAGGCT
GTTTTAGGCGCTCTAGAGGGGTCAAAAATCGAAAATTTTCTGGCCCGTCG
GGCCCAACCATGGTGGGCCCTCCTTAGACACTATATATAGCAGTTTTAGT
ATATATACCAGTTTAGGTTTTGCATGGTACCTTTAAAATCCTAAATCCGC
CCCTGCCAATGGGAAAGTTACAGTGGTCGGGGAGGAACAAACAAAATCAA
AAACAAACAAAAATCAACAAACCAACAAATCTAAAAAAGAAATTGAATAA
AAGAGTCCCCACAGAATTAAAAGAAACCTGTATTTCGCAAATGCGCGCAT
GCGTATTACTCGAAGAAACCGAAAGTGGTGATAAACACTAGTATGATTTT
TCTAGCAACAAGATGACATCGTCTCAAGATGGTTGGCAAACGATATCGTC
CCTCAGGATGCAAGTTACATTTTAAAATTTGCTAACCTACACGGGGGTTC
GGTTATTATAAGTTAGAATTAGGGTTGGAGCTCGAAAGTCACAATACAAG
GCCGAAGGCCTTCTTAGGGGCACTCGTACCCTGCGACTCAACTTAAGATC
TCGTAGTGATCTAAGGTCTGAAAATTACACACTATAAGTATTTGCAAGTG
ATGGCTATGTCTTGTTGACGCAAGTGGATAGGCGTCAGGCTTGTAAATCA
ATTTGCTTGCATTTGGTGGTTCGAGCCAAGGTAAGAACCTTGTTTCACAG
GCGCGGGTAAATCTCAAAAAAATACATTAAAACACTTGAAAAAGTCAGAA
AACCTGGATAGAAGATAAGAAAGTAAGCTACGTGTTGAATGGACCTACCT
GATGATGAAAGTTAGATAGCAATAAGGAGAAAAATAAAAAATATCACTCA
GAAGATATAGCGTTTAGCAAAAAAGCATAACACATTGATTGATTGTTGAT
AGGGGGAGAGGGAAGGGGAGTAGGGAGAATAGAAATAGAAAGTTCCGGTT
GCAAAAATCAGTTTTTTTGACAATTGAATCATGCCTGATGGTGGGCATTG
TTATCAATGTGTGGAAAAAAAAATAAATATAAGGAAAAAGTCCAATAAAA
ATCTGAAAAGACGGCGATTTCTGGCATTTTCAGCCTGAAAAAAATGTTTC
GCAAAAATCGGACTAACCTCCTTTCCTGCCCATTATCAGTTTTTTATGAT
TTACTATATGGCGCTAGAATATAATGCCCTGGCATTGTCTGGTCAAATAT
TACGTCTTCGGGACTTTAACCATTGGTCGAGCGGTTTCGCTGACGGCGCA
ATTATTTGTTTACATTGTTTGCCTGTTACCAAGTAGTCGCCGGCGATTGA
AAGGTAAAAAAGATTAAAAATTACAAACAAAGTCTGAAAGTGAAATTGAT
TGATATACAGTATATGTGAAAATTTTGTAGTCACTCTGGTATGAAATGAG
AATATCAAGTATGTAATTACCCAGATTACATCATCGACCGCCCTGGAGGC
GGTCCTTTCAGTTTTGACACGGGCGTGGTAAGGCCCTATTTAGGTAATTT
TGCTCTCGGCCACAAAGGCTGAAGTTATAAAAGTTTAAAAAAAGACAATT
ATCTATTTTTTAGATGGCTAATAACGAAGACAAACAATTATGGAGAGAAC
ACGCTGAACAATTGAAGCGAAAAAGAGGAAAACAAGGTGGAAAACAAGAA
ACAAGCAACAAAAAGAATGGAGCAGGCGCTAATATAATAAAGGAGCAGGA
AATGACTGTTTAAAGACTCGAATCCGAAACTGAAGGAACAGCCAAGAAGT
ACAAAAGGTGTGAAGCTGAAGTATTTGTTGCATACCCTTATGCCGAAGTA
TCAATCGAAAATATGAGGAGTGCATGTACAGCACACTTCAAAAAATAATG
GGGAAATTTGAAAAGTGTGACATTTTTAGATCACAGAATGGACCTTCGTG
CATTAAATTATCACAGATCAAATCCTTTGAAGTAATGTATGTCAGGTTTG
TCACGGATCAAAACTTTCTATCCCCGTCCGTAACCAAGTACTTTCTCAAG
ATGCCCCGACGGAGTTCTCTGCTTACTTGCTTGCTTAGAAGCTCAGGCCT
GAACAGGCCCCTTGCTCCTCATGACCAGGTCTTTCCAAGCATGACGGTCC
AGGGCAACTTGCTTAGTGTAGAATCAAACAACCAATCATTGTCCATCATA
ACTTCAGCAACACCATCAAAAAAACTTAAACTCCCCTCTAAAGATACATC
AAAGAATACCCGAAAAGCATCTCAATCTCAACCATGATGAAACTGGGAAC
GGACAGAACGGCACTGAAAATCCACCAATCACAGTTAATATCCAAGAATT
GAATGTATCCGAGATGAAATGGAGTTATCCCACTCCAAAAGAATTTACCG
TATCTGATGAACCGATGACCCAAGGAGGCTTTAAAAAGTCTTTAAGGTTG
TGGAGACTGACTCTAAAAAAACTATTTTTTTAAAACCTTCTCGCCTGACG
TTTTAACGACTATGGAAAATGTTAATAAAGTAGTTTCCTGAAGGAAACCA
AGGAAAGTTCGTCAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057123-exon-scaffold_285-1575043694:526865..527059 | TCONS_00057123-exon-scaffold_285-1575043694:526865..527059 | Clytia hemisphaerica | exon |
| TCONS_00057123-exon-scaffold_285-1575043694:524242..525196 | TCONS_00057123-exon-scaffold_285-1575043694:524242..525196 | Clytia hemisphaerica | exon |
| TCONS_00057123-exon-scaffold_285-1510915933:526865..527059 | TCONS_00057123-exon-scaffold_285-1510915933:526865..527059 | Clytia hemisphaerica | exon |
| TCONS_00057123-exon-scaffold_285-1510915933:524242..525196 | TCONS_00057123-exon-scaffold_285-1510915933:524242..525196 | Clytia hemisphaerica | exon |
| TCONS_00057123-exon-scaffold_285-1491911889:526865..527059 | TCONS_00057123-exon-scaffold_285-1491911889:526865..527059 | Clytia hemisphaerica | exon |
| TCONS_00057123-exon-scaffold_285-1491911889:524242..525196 | TCONS_00057123-exon-scaffold_285-1491911889:524242..525196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:524242..527059 - |
Blast
The following BLAST results are available for this feature:
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