TCONS_00057124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057124
Unique NameTCONS_00057124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057124 ID=TCONS_00057124|Name=TCONS_00057124|organism=Clytia hemisphaerica|type=transcript|length=513bp
TGAGGCTCAAGCTGTTCTTAAAACCTTTAGCACTTTCAGCcttctgttct
tatttttttaggtattttagGTTATATTTTCTATCTTTCTGCATTCGTGA
CCCTGCCCCATTTTGTGGATTTTTTCCCAGAATACCCACCCCCTCCACTT
ATTAGCTAAGACCCCCTACAATTAGacacaaaatagtacaaaactcTGGG
GTAGCCAATATACAAGAAACTTAAAACTTCAAAACCTATTTTATAAGCAA
ATTGGACCTCTGTGGcccaaaatgtcaaaacttatCGGCCAAATGCCAGA
CACCATCTTGAAATCGACTATAGTATGTCACTGATTGAATTCCAGCCCAG
ACTCTCAAAGttagtttctcatttttatACGACCATTTCAAGTTTTATGG
TGTTTACGATTTTTCAATTATTATACCCCTGACTATCCAGATACCTTGGG
TGAgtggaaaaaaattgttaaccaaattttatattttatgatgCTACAGT
AATATGATTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_285:537545..538124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057124 ID=TCONS_00057124|Name=TCONS_00057124|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at scaffold_285:537545..538124- (Clytia hemisphaerica)
TGAGGCTCAAGCTGTTCTTAAAACCTTTAGCACTTTCAGCCTTCTGTTCT
TATTTTTTTAGGTATTTTAGGTTATATTTTCTATCTTTCTGCATTTGTGA
CCCTGCCCAATTTTGTGGATTTTTTCCCAGAACNTAGGTTATATTTTCTA
TCTTTCTGCATTCGTGACCCTGCCCCATTTTGTGGATTTTTTCCCAGAAT
ACCCACCCCCTCCACTTATTAGCTAAGACCCCCTACAATTAGACACAAAA
TAGTACAAAACTCTGGGGTAGCCAATATACAAGAAACTTAAAACTTCAAA
ACCTATTTTATAAGCAAATTGGACCTCTGTGGCCCAAAATGTCAAAACTT
ATCGGCCAAATGCCAGACACCATCTTGAAATCGACTATAGTATGTCACTG
ATTGAATTCCAGCCCAGACTCTCAAAGTTAGTTTCTCATTTTTATACGAC
CATTTCAAGTTTTATGGTGTTTACGATTTTTCAATTATTATACCCCTGAC
TATCCAGATACCTTGGGTGAGTGGAAAAAAATTGTTAACCAAATTTTATA
TTTTATGATGCTACAGTAATATGATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035984XLOC_035984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057124-exon-scaffold_285-1575043694:538055..538124TCONS_00057124-exon-scaffold_285-1575043694:538055..538124Clytia hemisphaericaexon
TCONS_00057124-exon-scaffold_285-1575043694:537545..537987TCONS_00057124-exon-scaffold_285-1575043694:537545..537987Clytia hemisphaericaexon
TCONS_00057124-exon-scaffold_285-1510915933:538055..538124TCONS_00057124-exon-scaffold_285-1510915933:538055..538124Clytia hemisphaericaexon
TCONS_00057124-exon-scaffold_285-1510915933:537545..537987TCONS_00057124-exon-scaffold_285-1510915933:537545..537987Clytia hemisphaericaexon
TCONS_00057124-exon-scaffold_285-1491911889:538055..538124TCONS_00057124-exon-scaffold_285-1491911889:538055..538124Clytia hemisphaericaexon
TCONS_00057124-exon-scaffold_285-1491911889:537545..537987TCONS_00057124-exon-scaffold_285-1491911889:537545..537987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:537545..538124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777744	0.227608	1.05035	0.258551	0.314761	0.248729	0.15004	0.842795	0.491717	0.365443	1.06412	0.155447	0.232847	0.564232	0.132536	0.0711156	0.0876086	0.44898	0.248116	0.259635	0	0	0.401428	0.243304	0.501196	0.223653	0.160023	0	0.259063	0.263944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top