TCONS_00057125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057125
Unique NameTCONS_00057125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057125 ID=TCONS_00057125|Name=TCONS_00057125|organism=Clytia hemisphaerica|type=transcript|length=555bp
aagAAATACAATTGCAGAAAAACCACCTTCTGGCTACCATAAAAACCCTC
TCTCCAGAATGGTCAATAACCTTGAACGTCCGTTTATATTCAGCTATCCC
GTATGGGGATGGTATTGGTTGGTGTAGTATTATACTGATCACCAAGGGTT
CTGACAACAGTGAGTATGGTTACCGAACACCACTGGTGGAGTTGAAGAAA
ACGGAAAAAACTCTACATTTCGCATCTGCTATTAACGGTACTTCATCTGT
TGCATACGATGTTGTCGATTCACCATTGCAAATCAACCAGAATTACCATA
TCCAAATTGACCAAAGATATGTTAGTGCAGGGAATTACCAATATTCCGTA
CGTCTTGATGGTGTTGTAGTTTTTGAAACGTTGAATACAGACGCGAGACA
GTTTTATGATATGAAAGTTTACGCGGGTAATCCTTGGCGGGATGCTTGTC
CTGTGATGATACGTAATCTTCATCTTACTAATTTTGTGTAATTTATATCC
ATAGCTGGACGATTTAATTATTACTTCTCACTCCATATTTTATCTTTTGC
ACTTG
Run BLAST on NCBI

protein sequence of TCONS_00057125-protein

>TCONS_00057125-protein ID=TCONS_00057125-protein|Name=TCONS_00057125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
EIQLQKNHLLATIKTLSPEWSITLNVRLYSAIPYGDGIGWCSIILITKGS
DNSEYGYRTPLVELKKTEKTLHFASAINGTSSVAYDVVDSPLQINQNYHI
QIDQRYVSAGNYQYSVRLDGVVVFETLNTDARQFYDMKVYAGNPWRDACP
VMIRNLHLTNFV
Run BLAST on NCBI

transcript from alignment at scaffold_285:551150..554941-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057125 ID=TCONS_00057125|Name=TCONS_00057125|organism=Clytia hemisphaerica|type=transcript|length=3792bp|location=Sequence derived from alignment at scaffold_285:551150..554941- (Clytia hemisphaerica)
AAGGTAAAAATATTAAGTTGTAGTTCAATTTTACTTCCCTCCTGCAGTCA
GTCAGCATTGTTTCAACATTCTAGTTCAACGCCCTTGCTACTTTCCCAAT
TAGATATTCCGAAAGCGGAGTGGTGGTCGCCTTCACTAGAAACTCTTAAA
TAATGAATTGTCCTTGCTGTATCTAAAAATATTTTGGTGTGGCACAATAA
TCTAGGAAAACGCGGTCTTGCAAAATTTCGTTATCCAAACCTTCCAGATG
TTCACGACCCTCAATGGCTTAGCTTGTCGGAAGAAATTGTTTACATTTAA
TGCAAACCTTCTCATTGGAAATAATGACACGAAGGAATCTTTATAGGCTA
AGACACTATCAAAAGGGGAGCTATTGAGACAGGGGGTATTTGATAAAGAA
TCGTATAATATTATTAACGTGAAATGTCATCAAAATAAATGCAATCTATA
CATCTTGTCTAAAACTAGGTGGGTTATCAACCTCCTGGAAAATTCAGTCA
AAAATTGGTAAATAAATTATAAGAATCCCTACTGGATTACTGTGAATTGT
GAAATTTTAAATCCCCATCCTAAAATATTTTCCACTTCTCATTGGCATTT
AGGGAGTGTCAGAAAGTATCTACTAGGGGGGAGTGGAGGATATTCGAAAA
ATTAAGAAATATATTTCGCACCCACACCCCTAGCCTGGAAATCTTTTTCG
AACCCCCCCTCCCTCAAAAGGGTTAAAAAAATCTGCTCCCCTGCTTGCTA
AAAGTTTTTCCCCTGGACTCGAATTGACTGATTAATAAGGTGAGGGTTAT
ACTTATCGTACTTACTTATACCTACTTTTGAATAAGGGCGACTTGTCACA
TATAAATCGGGTTTAACTGCAGTAAATTTCCATATTGTGAGTATTCCTAT
AAGCCCCAATATCAAAATGTGGTGCACTCGTGTGGGGAGGATTACATTAT
TATATAGAAGGCAGCAAGAGGCTTGATTTCAAAGGATAGGAGAAAATTTC
GATTTTGGACTCCTGATTTCCTTTAAATATAGCTCTTTTTCGGACTGATT
CTGCCCAGAAATGAGGCTTTCAATGTCTGAATCATATGGAATTTAAAAGT
AAAGATTTTCTTTGCATATACAATATCTTAATATCACAGGAGTAATATTA
TCAGAGATTAGGGGGCGCAACCATAATTTGCGCCGACAGCAGAAAATTTT
CAATTTTCAACCACTTTGTTCGCTAAAAGCACTGCATTTTCATCTCTTCT
TAAAAAGGCTAGACTATGCTGACGAGTCTGCTAAATGACGCGCCTTACAC
GCCCACGCGCCCTCATATTGTTAACGCACCTTACGCGCCCACGCGCCCTA
AAATATTACGCGCCCACGCGCCTACGCGCCCTGGTAATTTGACGCGCCCT
AAAAATTTGAGGCGCCTTAAAATATCGACGCGCCCTGGTAATTTGACGCG
CCCTAAAAATTTGACGCGCCTTAGAATATCGACGCGCCCTGCAATCTTGT
GCATAATATAATGAGACTTTTTCTATCTAGTTGAGCTCAAAACAAGTGAA
AATCCTCCCCCCTGTTTACAAAGCTGTGGTGGTTGTTTTGCTTCTGCACA
GGACCAGCTTTGTAGACTGGGGAGAAGGGTTTTTCTAAAGAATAGTGTGG
ATTTCAAAAAAGTCCCATATATTTTGAACTTGATTGTGGTAATTTGACGC
GCCTTAAAAATTTGACGCGCCCTGATAATTTGACGCGCCCTAAAAAATCG
ACGCGCCCTGATAATTTGACACTACCTAAGTAACTGACAGTAATGAGATT
GATTTGAAGATCAGAGTTTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTGTTGTTATCCCAGTG
TCGTTCTATGAGCGATTGAGGATACAAACCTTTTTCCCGAGTATTTTATT
ACCAAGCCATAATTTGTGTTTTCAGTACATGATTTTTTGCTACGTCACTG
CAGTAATCAAATTATTATTTTAAATCACTCTTTTTCAAATTGAGATGTAC
ATTTAACAAAGACAGCGACAATGGAAAACTTTTCAAAAATTTCCAAGTCA
AAGATGATTACAAAAAGTTGGGTTTTCTGTGAAGGGACAAATTTGTGCAT
TTTCCCCTGTAAATTGAATAGAAATAACGTGTAGCATGCACAAATTCANN
NTCTTAAGAAATGATCATTTTGCTAACACCGGCATTCTTTTATATACCAA
CCATGTATGATTAGACCGGTCCCATTATTCCGTCCGTCAAAACCGTCGAA
AACTTTAGGCACTTTCAGGCGTGTTGAAATCTTAGGGCGCGTCAAATTTT
CAAGGCGCGTCGAAATTCTAGGGCGCGTCGAAATCATAGGGCGCGTCAAA
TTTTCAAGGCGCGTCGAAATTCTAGGGCGCGTCGAAATCATAGGGCGCGT
CAAATTTTCAAGGCGCGTCGAAATCATAGGGCGCGTCAAATTTTCAAGGC
GCGTCGAAATCATAGGGCGCGTCAAATTTAGAAGGCGCGTCGAAATTCTA
GGGCGCGTCAAATTTTCAAGGCGCGTCGAAATTCTAGGGCGCGTCAAATT
TTCAAGGCGCGTCAGGCGCGTAGGCGCGTGGGCGCGTAAGGCGCGTTAGA
AATATGAGGGCGCGTGGGCGCGTAAGGCACGTCATTTAGCAGACTCCTAT
GCTGACATATGAAATTGTAAGAGGGGATCCCTTAACAAAATTTCTCTGTT
AGTCTGCTGAACTTATTTTTACACAATGACCAAGGAACCAAAATAGAGAG
GCTATCACAATGATATTTCATGAATACAGAAGTAACAATGATACGAAATA
CGAAAATTTTTTAAATCTTCAAATGTGAAATCATGAAATTTAACCTCCTG
ATTTGCCCAAAAATATTTCGCACCCCCCCCTTTTCCATTGAAAATATTTT
GGAACTCGCCCCCCTAAACCCTCAAAAAATATTTCGAACCCCCCTGAAAT
CCTCCACCCCCCCTGGTAGATACTTTCTGACCACTCCCTTAGCATTTTAT
CTTAAAGATCCTGAATCGGGAACTGAAACAGGGATTTAATGATTCTAATA
AAGATTTGGATAACAATTGCAAGTTTCTTTCAATCTTTAGAAATACAATT
GCAGAAAAACCACCTTCTGGCTACCATAAAAACCCTCTCTCCAGAATGGT
CAATAACCTTGAACGTCCGTTTATATTCAGCTATCCCGTATGGGGATGGT
ATTGGTTGGTGTAGTATTATACTGATCACCAAGGGTTCTGACAACAGTGA
GTATGGTTACCGAACACCACTGGTGGAGTTGAAGAAAACGGAAAAAACTC
TACATTTCGCATCTGCTATTAACGGTACTTCATCTGTTGCATACGATGTT
GTCGATTCACCATTGCAAATCAACCAGAATTACCATATCCAAATTGACCA
AAGATATGTTAGTGCAGGGAATTACCAATATTCCGTACGTCTTGATGGTG
TTGTAGTTTTTGAAACGTTGAATACAGACGCGAGACAGTTTTATGATATG
AAAGTTTACGCGGGTAATCCTTGGCGGGATGCTTGTCCTGTGATGATACG
TAATCTTCATCTTACTAATTTTGTGTAATTTATATCCATAGCTGGACGAT
TTAATTATTACTTCTCACTCCATATTTTATCTTTTGCACTTG

Coding sequence (CDS) from alignment at scaffold_285:551150..554941-

>TCONS_00057125 ID=TCONS_00057125|Name=TCONS_00057125|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_285:551150..554941- (Clytia hemisphaerica)
AAATACAATTGCAGAAAAACCACCTTCTGGCTACCATAAAAACCCTCTCT
CCAGAATGGTCAATAACCTTGAACGTCCGTTTATATTCAGCTATCCCGTA
TGGGGATGGTATTGGTTGGTGTAGTATTATACTGATCACCAAGGGTTCTG
ACAACAGTGAGTATGGTTACCGAACACCACTGGTGGAGTTGAAGAAAACG
GAAAAAACTCTACATTTCGCATCTGCTATTAACGGTACTTCATCTGTTGC
ATACGATGTTGTCGATTCACCATTGCAAATCAACCAGAATTACCATATCC
AAATTGACCAAAGATATGTTAGTGCAGGGAATTACCAATATTCCGTACGT
CTTGATGGTGTTGTAGTTTTTGAAACGTTGAATACAGACGCGAGACAGTT
TTATGATATGAAAGTTTACGCGGGTAATCCTTGGCGGGATGCTTGTCCTG
TGATGATACGTAATCTTCATCTTACTAATTTTGTGTAAGAAATACAATTG
CAGAAAAACCACCTTCTGGCTACCATAAAAACCCTCTCTCCAGAATGGTC
AATAACCTTGAACGTCCGTTTATATTCAGCTATCCCGTATGGGGATGGTA
TTGGTTGGTGTAGTATTATACTGATCACCAAGGGTTCTGACAACAGTGAG
TATGGTTACCGAACACCACTGGTGGAGTTGAAGAAAACGGAAAAAACTCT
ACATTTCGCATCTGCTATTAACGGTACTTCATCTGTTGCATACGATGTTG
TCGATTCACCATTGCAAATCAACCAGAATTACCATATCCAAATTGACCAA
AGATATGTTAGTGCAGGGAATTACCAATATTCCGTACGTCTTGATGGTGT
TGTAGTTTTTGAAACGTTGAATACAGACGCGAGACAGTTTTATGATATGA
AAGTTTACGCGGGTAATCCTTGGCGGGATGCTTGTCCTGTGATGATACGT
AATCTTCATCTTACTAATTTTGTGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035985XLOC_035985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057125-proteinTCONS_00057125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057125-exon-scaffold_285-1575043694:554939..554941TCONS_00057125-exon-scaffold_285-1575043694:554939..554941Clytia hemisphaericaexon
TCONS_00057125-exon-scaffold_285-1575043694:551150..551701TCONS_00057125-exon-scaffold_285-1575043694:551150..551701Clytia hemisphaericaexon
TCONS_00057125-exon-scaffold_285-1510915933:554939..554941TCONS_00057125-exon-scaffold_285-1510915933:554939..554941Clytia hemisphaericaexon
TCONS_00057125-exon-scaffold_285-1510915933:551150..551701TCONS_00057125-exon-scaffold_285-1510915933:551150..551701Clytia hemisphaericaexon
TCONS_00057125-exon-scaffold_285-1491911889:554939..554941TCONS_00057125-exon-scaffold_285-1491911889:554939..554941Clytia hemisphaericaexon
TCONS_00057125-exon-scaffold_285-1491911889:551150..551701TCONS_00057125-exon-scaffold_285-1491911889:551150..551701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:551150..554941 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.218536	0.395482	0	0.165763	0.214055	0	0.478023	0.283886	0.328068	0.931581	0.607131	1.00066	0.867855	1.12532	1.91557	0.1528	0	0.595701	1.08065	1.54778	0.717242	0.747935	0.244944	0.455232	0.463809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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