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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057081 ID=TCONS_00057081|Name=TCONS_00057081|organism=Clytia hemisphaerica|type=transcript|length=675bp
TCCTCATCGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGA
AGATCAAGACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTA
AGAATGAAGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAAC
ATGAAGGACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACT
TGACAATAAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCAC
CATTTCAGCAGTTACAGCGTTTTTGCCAGATGCAATCGATGGCTATGAAT
CCAGCTCAACAATATTCATTCCCAACCAACAACAACCAACAAAATCACAG
CATACTCAACAGTATAATGTATTCAAATCTATTCAATAACGGATACAATT
TAAACACCAGTAGCAGTTCTACTTCGTCGCCATGGAGATACAGTTCGACT
CAACAAGAAGATCAATTAAGATCGATGCACGAGAACTTTGAAATAATGTT
ACAGGCTGCAAACGAACTTGAAGCCTCTACACGACGAAATGAAAACGTCG
ATGATGATGAAGCTAATGATATATTTAAAGATATAAGTATGAGGTCCTGC
AGCCCTGTATCAATTAGCTCATCAATTTCAACAGAAGATTTAGAGAAACT
TTTAATGGAGACACAATCTAACACT Run BLAST on NCBI protein sequence of TCONS_00057081-protein >TCONS_00057081-protein ID=TCONS_00057081-protein|Name=TCONS_00057081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
SSSSFPTIHGIKSEPMEDQDFPQGCQETTIRLPKNEVDDLEDVKPTLTLN
MKDTNRKSSKSSSKKRLDNKEFKSLLERSRLYPPFQQLQRFCQMQSMAMN
PAQQYSFPTNNNQQNHSILNSIMYSNLFNNGYNLNTSSSSTSSPWRYSST
QQEDQLRSMHENFEIMLQAANELEASTRRNENVDDDEANDIFKDISMRSC
SPVSISSSISTEDLEKLLMETQSNT Run BLAST on NCBI transcript from alignment at scaffold_285:572978..575614+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057081 ID=TCONS_00057081|Name=TCONS_00057081|organism=Clytia hemisphaerica|type=transcript|length=2637bp|location=Sequence derived from alignment at scaffold_285:572978..575614+ (Clytia hemisphaerica)
TCCTCATCGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGA
AGATCAAGACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTA
AGAATGAAGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAAC
ATGAAGGACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACT
TGACAATAGTAAGTTTTTTTGAATCTTCTATTCTCAACGCTACGCCGTat
tgttggaaaattgcaaatgaaTAATATCAAAGTTTCAAAAGGGCAAAGTG
TTTTatggattttaatttttattgtcTTCATACAAGTCATACAAGACTTC
AGTAAGTCATGCGCTGTTGtttattaaaaatgtttttttcccaaTCAACC
ATGAAAGATTCAACCTAAATTTAACATGTAATACGTACCTAAAGTCGAAg
cctgaagcaaaaatttgtatttttgagcctctctaaaaatggcattctta
gattcagtttggaaattttatgatggtgatattttcagcatatttttaat
tatttggccaaattcatataaaaaaaaaagcgtgccATGATGGAAAATTG
AAAGTGAGTAAtgtaaaataaaagttttgatgGGGAAAGTTTTGTATTGT
atggattttattttttcattaccttaatacaaaacttttgaatttatgAA
ATTAGTCACTTTAACGCTCTTCCCGGCTAAACCACCAATTCAATTTTGTT
ATCTATCTAGAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCC
ACCATTTCAGCAGGTATGAAAATAATAGTCCAATCCCTAAAAATACTTTG
GAAAATGTTGCTCCCTTCTTTCTCcaagaattaaaaaaaggtcGATATCT
TTTACGTGGATACCCAGatgacacacaacgttatttcaacgttaatctaa
aaTTCACAGCGTCCATACAACGTtagaaacaacgttttgtgccagctggt
aGCTAAGTAACAGAGTAGCCTAGTAGTTTTAAATTGTTTCCACGTGGTCT
ACAGCTAGGCTGCCTAAGATTTTAAAACCTAAGATAGGAAAAAACGGGTA
TTCGAACTGAGGACCCCTGTCTCATGTTGCTGTCGCCTTAGACCATGCAC
TCGGTATTCGCTCCTTAAAAAGCATTCTCTTCATATGCCAGTATCTTAAG
AGAATTATCCAAAACTTTCAGAATAaagcatttttcaaatattttccagT
TACAGCGTTTTTGCCAGATGCAATCGATGGCTATGAATCCAGCTCAACAA
TATTCATTCCCAACCAACAACAACCAACAAAATCACAGCATACTCAACAG
TATAATGTATTCAAATCTATTCAATAACGGATACAATTTAAACACCAGTA
GCAGTTCTACTTCGTCGCCATGGAGATACAGTAGGTGCATGTTCATCTGA
TTTAACAATTTTATAGAGTATCAGGAGTATGTAGAGTCCACTGAGTAATT
TTCCTCATAAATTGTTGTCGAGTTTTTCCTAGAAATCACGGCTTTTCCTT
TTAGTGGTTTATCTACTCAGGCATTTTCGAGGTTTAAGGTACTCTGGCCG
TTCACATATAGTTTTAATATCCATTTTGTCAAAGTCCTTGGTCCCGGATA
TTTCTTGTGAAGAAATCTCCCAGCCTCGTTTCCAGCGTATTAtcggcttt
ttgatgcttactgatagcgcaaACTTAAACAGCCAACACCAGTGTATTTC
CTGGTGTCCAAAAGTAGGGTAATAAAGCCTGAGATGCACGGGGACAAATT
AGAAGTTTACTCAACATGGAAATCGCATTAAATGGTATAATCTATTCTAT
ATATTATTTATCAGGTTCGACTCAACAAGAAGATCAATTAAGATCGATGC
ACGAGAACTTTGAAATAATGTTACAGGCTGCAAACGAACTTGAAGCCTCT
ACACGACGAAATGAAAACGTCGATGATGATGAAGCTAATGATATATTTAA
AGATATAAGTATGAGGGTACGTATGGTATGCTTAGTAGAGATCCACCCTT
TAATTaacctatttcataggattcgtgcatctgttacacgctttttctat
TAGATTTGAAGTGGGAAAAGGCACAAATCTCTGCAGATTTCTGTTTGTGA
AGGACGTTGAAAAAATTTGCCACCGTTCATTTGACTTGGGAATTCATGAG
CTCTTTTCCATAGTTTTTGCCTTTGtacaagttataatctcaagtGACGT
AGTGACATAGAAAAATATCATGTGCTTAAAACATAAATCCCATGAAATAG
CGAAAATAAATCTTATCCAAGGTTTATTCGTTCTAATTTTTCGTGATTTC
CAGGCTTAATGCTCTTGAAATGTTTTTAGAATAGGACTTATATGTAGGTG
CATTTTCATTAAACACTACCATCCCGTTTTATTTGTTTCTAGCTCCTTGT
CCAGAAAAAATAGGCCATTGGGTAGAGGGCAGTGACCTCTGTCTTAAGCT
TCTGATAGAAAGCAAACGTCAAAACttttcatttaaaataaattctcCTT
TTGTAGTCCTGCAGCCCTGTATCAATTAGCTCATCAATTTCAACAGAAGA
TTTAGAGAAACTTTTAATGGAGACACAATCTAACACT Coding sequence (CDS) from alignment at scaffold_285:572978..575614+ >TCONS_00057081 ID=TCONS_00057081|Name=TCONS_00057081|organism=Clytia hemisphaerica|type=CDS|length=3375bp|location=Sequence derived from alignment at scaffold_285:572978..575614+ (Clytia hemisphaerica)
TCCTCATCGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGA
AGATCAAGACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTA
AGAATGAAGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAAC
ATGAAGGACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACT
TGACAATAAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCAC
CATTTCAGCAGTTACAGCGTTTTTGCCAGATGCAATCGATGGCTATGAAT
CCAGCTCAACAATATTCATTCCCAACCAACAACAACCAACAAAATCACAG
CATACTCAACAGTATAATGTATTCAAATCTATTCAATAACGGATACAATT
TAAACACCAGTAGCAGTTCTACTTCGTCGCCATGGAGATACAGTTCGACT
CAACAAGAAGATCAATTAAGATCGATGCACGAGAACTTTGAAATAATGTT
ACAGGCTGCAAACGAACTTGAAGCCTCTACACGACGAAATGAAAACGTCG
ATGATGATGAAGCTAATGATATATTTAAAGATATAAGTATGAGGTCCTGC
AGCCCTGTATCAATTAGCTCATCAATTTCAACAGAAGATTTAGAGAAACT
TTTAATGGAGACACAATCTAACACTTCCTCATCGTCATTCCCGACCATCC
ACGGCATTAAATCAGAACCTATGGAAGATCAAGACTTTCCACAAGGTTGC
CAAGAAACTACAATTCGATTGCCTAAGAATGAAGTCGATGACCTAGAAGA
TGTTAAGCCGACTTTGACTTTAAACATGAAGGACACAaatagaaaatctt
caaaatcatcTTCGAAGAAAAGACTTGACAATAAAGAGTTCAAATCATTG
TTGGAAAGATCAAGATTATACCCACCATTTCAGCAGTTACAGCGTTTTTG
CCAGATGCAATCGATGGCTATGAATCCAGCTCAACAATATTCATTCCCAA
CCAACAACAACCAACAAAATCACAGCATACTCAACAGTATAATGTATTCA
AATCTATTCAATAACGGATACAATTTAAACACCAGTAGCAGTTCTACTTC
GTCGCCATGGAGATACAGTTCGACTCAACAAGAAGATCAATTAAGATCGA
TGCACGAGAACTTTGAAATAATGTTACAGGCTGCAAACGAACTTGAAGCC
TCTACACGACGAAATGAAAACGTCGATGATGATGAAGCTAATGATATATT
TAAAGATATAAGTATGAGGTCCTGCAGCCCTGTATCAATTAGCTCATCAA
TTTCAACAGAAGATTTAGAGAAACTTTTAATGGAGACACAATCTAACACT
TCCTCATCGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGA
AGATCAAGACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTA
AGAATGAAGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAAC
ATGAAGGACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACT
TGACAATAAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCAC
CATTTCAGCAGTTACAGCGTTTTTGCCAGATGCAATCGATGGCTATGAAT
CCAGCTCAACAATATTCATTCCCAACCAACAACAACCAACAAAATCACAG
CATACTCAACAGTATAATGTATTCAAATCTATTCAATAACGGATACAATT
TAAACACCAGTAGCAGTTCTACTTCGTCGCCATGGAGATACAGTTCGACT
CAACAAGAAGATCAATTAAGATCGATGCACGAGAACTTTGAAATAATGTT
ACAGGCTGCAAACGAACTTGAAGCCTCTACACGACGAAATGAAAACGTCG
ATGATGATGAAGCTAATGATATATTTAAAGATATAAGTATGAGGTCCTGC
AGCCCTGTATCAATTAGCTCATCAATTTCAACAGAAGATTTAGAGAAACT
TTTAATGGAGACACAATCTAACACTTCCTCATCGTCATTCCCGACCATCC
ACGGCATTAAATCAGAACCTATGGAAGATCAAGACTTTCCACAAGGTTGC
CAAGAAACTACAATTCGATTGCCTAAGAATGAAGTCGATGACCTAGAAGA
TGTTAAGCCGACTTTGACTTTAAACATGAAGGACACAaatagaaaatctt
caaaatcatcTTCGAAGAAAAGACTTGACAATAAAGAGTTCAAATCATTG
TTGGAAAGATCAAGATTATACCCACCATTTCAGCAGTTACAGCGTTTTTG
CCAGATGCAATCGATGGCTATGAATCCAGCTCAACAATATTCATTCCCAA
CCAACAACAACCAACAAAATCACAGCATACTCAACAGTATAATGTATTCA
AATCTATTCAATAACGGATACAATTTAAACACCAGTAGCAGTTCTACTTC
GTCGCCATGGAGATACAGTTCGACTCAACAAGAAGATCAATTAAGATCGA
TGCACGAGAACTTTGAAATAATGTTACAGGCTGCAAACGAACTTGAAGCC
TCTACACGACGAAATGAAAACGTCGATGATGATGAAGCTAATGATATATT
TAAAGATATAAGTATGAGGTCCTGCAGCCCTGTATCAATTAGCTCATCAA
TTTCAACAGAAGATTTAGAGAAACTTTTAATGGAGACACAATCTAACACT
TCCTCATCGTCATTCCCGACCATCCACGGCATTAAATCAGAACCTATGGA
AGATCAAGACTTTCCACAAGGTTGCCAAGAAACTACAATTCGATTGCCTA
AGAATGAAGTCGATGACCTAGAAGATGTTAAGCCGACTTTGACTTTAAAC
ATGAAGGACACAaatagaaaatcttcaaaatcatcTTCGAAGAAAAGACT
TGACAATAAAGAGTTCAAATCATTGTTGGAAAGATCAAGATTATACCCAC
CATTTCAGCAGTTACAGCGTTTTTGCCAGATGCAATCGATGGCTATGAAT
CCAGCTCAACAATATTCATTCCCAACCAACAACAACCAACAAAATCACAG
CATACTCAACAGTATAATGTATTCAAATCTATTCAATAACGGATACAATT
TAAACACCAGTAGCAGTTCTACTTCGTCGCCATGGAGATACAGTTCGACT
CAACAAGAAGATCAATTAAGATCGATGCACGAGAACTTTGAAATAATGTT
ACAGGCTGCAAACGAACTTGAAGCCTCTACACGACGAAATGAAAACGTCG
ATGATGATGAAGCTAATGATATATTTAAAGATATAAGTATGAGGTCCTGC
AGCCCTGTATCAATTAGCTCATCAATTTCAACAGAAGATTTAGAGAAACT
TTTAATGGAGACACAATCTAACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057081-exon-scaffold_285-1491911889:572978..573185 | TCONS_00057081-exon-scaffold_285-1491911889:572978..573185 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1510915933:572978..573185 | TCONS_00057081-exon-scaffold_285-1510915933:572978..573185 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1575043694:572978..573185 | TCONS_00057081-exon-scaffold_285-1575043694:572978..573185 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1491911889:573738..573790 | TCONS_00057081-exon-scaffold_285-1491911889:573738..573790 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1510915933:573738..573790 | TCONS_00057081-exon-scaffold_285-1510915933:573738..573790 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1575043694:573738..573790 | TCONS_00057081-exon-scaffold_285-1575043694:573738..573790 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1491911889:574227..574407 | TCONS_00057081-exon-scaffold_285-1491911889:574227..574407 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1510915933:574227..574407 | TCONS_00057081-exon-scaffold_285-1510915933:574227..574407 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1575043694:574227..574407 | TCONS_00057081-exon-scaffold_285-1575043694:574227..574407 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1491911889:574842..574993 | TCONS_00057081-exon-scaffold_285-1491911889:574842..574993 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1510915933:574842..574993 | TCONS_00057081-exon-scaffold_285-1510915933:574842..574993 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1575043694:574842..574993 | TCONS_00057081-exon-scaffold_285-1575043694:574842..574993 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1491911889:575534..575614 | TCONS_00057081-exon-scaffold_285-1491911889:575534..575614 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1510915933:575534..575614 | TCONS_00057081-exon-scaffold_285-1510915933:575534..575614 | Clytia hemisphaerica | exon |
| TCONS_00057081-exon-scaffold_285-1575043694:575534..575614 | TCONS_00057081-exon-scaffold_285-1575043694:575534..575614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:572978..575614 + |
Blast
The following BLAST results are available for this feature:
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