|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057090 ID=TCONS_00057090|Name=TCONS_00057090|organism=Clytia hemisphaerica|type=transcript|length=1600bp
TTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGGAAG
AAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACTTCA
CGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGATTCA
ACTATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGATCTAGTTAA
CTTGGAAGGCTACGTCAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAA
AGGCTGCCGACAAAAAGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGT
GAAAACAATACGGTCCGTGCTGTTTGTTATGATCTCGATCGCAGACCTTT
GTTGGAAAAATTCAACAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAG
AAAAATCAGATAATGATGTCATTATTCTAGATGATACAATTATTAAACAA
AAGAAGGTTGCTTTTGATAACAAAACTTTTGAACCACAGATTACATCATT
AATGTCAGTTTTACAAGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTG
GCAGAATCTATGACCTACAAGACACGTCCTCATCTTCAAAACAAAAGACA
AAACTTAGAGAAGCCAAAATCATTGACCAATCAAATGTTTCCCGTCAGAT
AACTTTCTTTGACCACTTTGATGAAGTTGATGAAGgGAAAGTATACAAGA
TTACAAATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTT
TCGGAAAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAA
ACCAGCAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTA
TGGTCGACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAA
AAAGAAACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACAT
ATCAATCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGA
AATCGTCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAG
CATCTGCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCT
CAAGTTATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAA
CTGTGAAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATCT
AAATTGGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAAA
TACAGAAAGTAACTGAACTTTTTTGGATTACGtttcagtttgattttttc
atttacttgTTTTAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTGA
AACTCTACTCTAAACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAATC
TGAATAACAACCAAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAATA
ACACTTTATTCTTTACTGAGatatttaaaattcaaaaccaaCAATGTAAA
TAGATTTCAGCTTTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGTT
ATGATATCTTTTGTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTTT Run BLAST on NCBI protein sequence of TCONS_00057090-protein >TCONS_00057090-protein ID=TCONS_00057090-protein|Name=TCONS_00057090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MASPSPSKKTKKDLVNLEGYVNFVGSPRKAKQKAADKKEIEFFEVSVNCE
NNTVRAVCYDLDRRPLLEKFNKESNSCCLLNAEKSDNDVIILDDTIIKQK
KVAFDNKTFEPQITSLMSVLQEIPIWARVSVLGRIYDLQDTSSSSKQKTK
LREAKIIDQSNVSRQITFFDHFDEVDEGKVYKITNVMVAKYDKKKVLKVS
ENSSIQEIHDKPEIPKPATTTRSSEKCSGIVCMVDPKSLNTRFLCGKCEK
ETQRNHDNLFYCCNNISIESEMVKKEDVIFMVKSSVGEESLKIQLNSKKH
LLESMVGVPTTNPLFLKLFMGSKVDVTYKMVSTVKDVVDISDCAQQSTSK
LAPQNIDEQPSTDSINTESN Run BLAST on NCBI transcript from alignment at scaffold_285:624334..628178+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057090 ID=TCONS_00057090|Name=TCONS_00057090|organism=Clytia hemisphaerica|type=transcript|length=3845bp|location=Sequence derived from alignment at scaffold_285:624334..628178+ (Clytia hemisphaerica)
TTATTACAACTTCTAACTTAGGCTTTATATCTTTGCGGGGGTCAAGGAAG
AAATTTCTGGAATATTTCGAATTCTTTGGCCCTTTTCAAACAAGACTTCA
CGTGCACAAGACAGATTTTCCCCATCAGATCAATTCGTATCCAAGGtgag
tttttttaaaaatatcttatTGATACTGCCTAATTGTCTTGAAATGTTGA
AGTACTTGACAATATCTGTATTTAACTCAACTTCCCAGTATGCAAATTGG
GCATGAGCGATTAAAATGGACTCAAATTCATCGAGAAATCACTTTATTTT
AGGTGTAAGAATTTCTTCCATCTGCAGGTATCCAATGTGCATGTAATTCT
TTACACAgcactgaaaaaaattttttgtttgtttatattaGATTCAACTA
TGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGGTATTTCTCAAACA
TTGACATTACATTCACCTGCATTTACATCTCATCCAGTCTGGAAGGAAGG
AAATGTTTATGCCAGAAATTTCCGTGCTATAGCCTTGGTATAAAAGCATC
AGAAATCGTCTGCCGGAGATATCCGGTGGGCTCTCCAGATTGGCATGTCA
TCAATACACATCAGTGCTACTAGATTAGTCCTCCCTACTTTCAGTCCTTA
CCTTACCTTCACAAGGCGGTAACCTCTCTTCAGTCCTTACCTTACCTTCA
TAAGGCGGTTAtcaaaatatctttgtttcgtGTTGCCCGATTGACTCTTG
AAAATTGAGTAAATTTGAGTCAGTAATGTCAGACTTTTTGTGACAATGAC
ttttcctttgctcaaaaattttacttttgctAATATTAATTGTgagcaat
acacctttcccgtattTCAGATTTCCCGGAAAAAGACCTGTTCTCCACCA
TTGTGATATTTTTTCACGGGAGGTAAACAAACTCGATTTTGCCTACGTTT
GCTTAGGGGAAAGCAGTTTTTGTCTTCTATCTTTTGATGCACAAAttcgt
ttttaaaaaaatttggagGGTAGTATTGTATCATGAATAGTAAAAACATA
CCATAGTTTGAAGAAATTCTATACGATGGAAGTTGAGAAAAGTCCAAAAA
ACCACCTTTTTCTAAGCAATCGCCAGCAAAAATAGGTTTGTTTACCTCCC
GTCCAAGAAACGATGGAGAGCCAAAAAATATGCGCGCGCATATTTTTTTT
GAAATACGGGAAAGGTGTATTGCCGCCTAAATTTGACAATAAATCATTGG
TATAACTCAAAGTTTTCAAGCTAAAAGGACTTTCGCAATACATTAACTGG
TAAATTAAAATCTTTTTATTTTTAGATCTAGTTAACTTGGAAGGCTACGT
CAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAAAGGCTGCCGACAAAA
AGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGTGAAAACAATACGGTC
CGTGCTGTTTGTTATGATCTCGATCGCAGACCTTTGTTGGAAAAATTCAA
CAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAGAAAAATCAGATAATG
ATGTCATTATTCTAGATGATACAATTATTAAACAAAAGAAGGTTGCTTTT
GATAACAAAACTTTTGAACCACAGATTACATCATTAATGTCAGTTTTACA
AGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTGGCAGAATCTATGACC
TACAAGACACGTCCTCATCTTCAAAACAAAAGACAAAACTTAGAGAAGCC
AAAATCATTGACCAATCAAATGTTTCCCGTCAGATAACTTTCTTTGACCA
CTTTGATGAAGTTGATGAAGGTAAGGATGTTTTAAGAATTTTTAATTGTT
TCTATTCATTACCATCCTCTCCTGACAACTTAATTCCCTGGTGAACTCTC
AAAAGTTTGATTGGAACAGTGCGAATTTTTTAATATGCTTAAATTTGATT
TAGCTCCCCCTGACACGAGCTTTATTGGGCAGTTCCAGAAAAAAACCATT
ACCCCCCTGTGGACAACAGGGTTTTTTGGAATTTTTTGTCACTTGGAAAT
CCTGAGAAATTTGAGAAAGGTCTCGGAAAATCCATTATTTTTCTTCATTA
TTTTGTCATCCGTATCGGAAAATCCTGGAAAATCCATAAAATTTGCTCTA
TTTTCTTGCAAAGTATCGGAAAATCCAAGATTTTTCCTTAAAAAATCTTG
AATGTTACGGAAATCCTTAAGTTtctcaaaagtaaattgttacgGAAAAT
CCATGTCGTCCACAGGGGGGTAACGGACTATAACTGGAACCGCCCATTGG
TCACATATGGTGAAATACATTACGTAATCTAACTACATGTTTGTGAATTT
GACCCTCAACAGTACAGCCACTTTTCATTAATTTAGTTACGTTGTTAAGT
AAAGTGAGGTTAAATTTAATTACACTTTGCGCTAGCTTGTGGTAAACCAT
TTTAGCATGGCTTCAAATGATAAAAGTGGTGCGCCTCTCATTATTGTGGC
TTTTTTTTCGACCAAAAGCAAGTATTTAATTCATATGACGGCCATCGAAA
AATGTTCTATTCGTGTCACCCACCCGCAtcatttttcgctgattttccaG
TGCGGAGATTCCGGTGAGGCAAAATccgggaaaagcaatttgttcttata
aggtATAGCTGTTTTCTTGATCGCTCTTGGAGGCCATAAAAAATTGTATT
GTTTGCCGCAATTTTGAAATACCTGGGAATTTTTCCACCGCCTGTCCACC
CGCATGAATTTTTAACATCCGCTGTGACGCTAACAGagcaatttttcgat
ggccgtATGCGCAATGTGAACTATATTTATTTTGCCTAAATATAGCGCAC
AAGTTAGAAAATAAATGAGTTTGAGAAAATAAATGAGTTTGTTTTTCATG
CAActtaactttctttttcttttaatttaggGAAAGTATACAAGATTACA
AATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTTTCGGA
AAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAAACCAG
CAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTATGGTC
GACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAAAAAGA
AACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACATATCAA
TCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGAAATCG
TCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAGCATCT
GCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCTCAAGT
TATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAACTGTG
AAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATCTAAATT
GGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAAATACAG
AAAGTAACTGAACTTTTTTGGATTACGtttcagtttgattttttcattta
cttgTTTTAGTTATTATGTATGAGTGAACCTTGTAAATCTTTTGAAACTC
TACTCTAAACCCTTAAGTTTGATGCCGATTTCAGTTTTGAAAATCTGAAT
AACAACCAAAATTATGTTCAAGTGTGAGCTATTCTCAAACAAATAACACT
TTATTCTTTACTGAGatatttaaaattcaaaaccaaCAATGTAAATAGAT
TTCAGCTTTTTGTTTTTACAGTATTTCTAATACTAGCATTTTGTTATGAT
ATCTTTTGTTGTTGTGCTGGCCACAACTCCATGAATGTATTTTTT Coding sequence (CDS) from alignment at scaffold_285:624334..628178+ >TCONS_00057090 ID=TCONS_00057090|Name=TCONS_00057090|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at scaffold_285:624334..628178+ (Clytia hemisphaerica)
ATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAGATCTAGTTAACTT
GGAAGGCTACGTCAATTTTGTGGGTTCACCAAGAAAAGCCAAGCAAAAGG
CTGCCGACAAAAAGGAAATCGAGTTCTTTGAAGTATCAGTCAATTGTGAA
AACAATACGGTCCGTGCTGTTTGTTATGATCTCGATCGCAGACCTTTGTT
GGAAAAATTCAACAAAGAAAGTAACTCCTGCTGCTTGCTGAATGCAGAAA
AATCAGATAATGATGTCATTATTCTAGATGATACAATTATTAAACAAAAG
AAGGTTGCTTTTGATAACAAAACTTTTGAACCACAGATTACATCATTAAT
GTCAGTTTTACAAGAAATTCCCATTTGGGCCAGAGTATCAGTGCTTGGCA
GAATCTATGACCTACAAGACACGTCCTCATCTTCAAAACAAAAGACAAAA
CTTAGAGAAGCCAAAATCATTGACCAATCAAATGTTTCCCGTCAGATAAC
TTTCTTTGACCACTTTGATGAAGTTGATGAAGgGAAAGTATACAAGATTA
CAAATGTAATGGTTGCAAAGTATGATAAGAAGAAAGTCCTCAAAGTTTCG
GAAAATTCTTCAATCCAAGAAATTCATGATAAACCTGAAATTCCAAAACC
AGCAACAACCACTCGCTCATCTGAAAAATGTTCCGGTATAGTTTGTATGG
TCGACCCGAAATCCTTGAATACAAGATTTTTATGCGGTAAATGTGAAAAA
GAAACACAACGCAATCATGATAACTTGTTTTATTGTTGCAATAACATATC
AATCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATTTTCATGGTGAAAT
CGTCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAATTCGAAAAAGCAT
CTGCTGGAAAGTATGGTTGGTGTGCCGACAACAAATCCTTTATTTCTCAA
GTTATTTATGGGATCCAAAGTTGATGTTACTTATAAAATGGTTTCAACTG
TGAAAGATGTTGTCGACATATCGGATTGTGCTCAACAATCAACATCTAAA
TTGGCTCCCCAAAACATTGACGAACAGCCTTCAACTGACTCTATAAATAC
AGAAAGTAACTGAATGGCATCTCCATCTCCATCAAAGAAAACCAAAAAAG
ATCTAGTTAACTTGGAAGGCTACGTCAATTTTGTGGGTTCACCAAGAAAA
GCCAAGCAAAAGGCTGCCGACAAAAAGGAAATCGAGTTCTTTGAAGTATC
AGTCAATTGTGAAAACAATACGGTCCGTGCTGTTTGTTATGATCTCGATC
GCAGACCTTTGTTGGAAAAATTCAACAAAGAAAGTAACTCCTGCTGCTTG
CTGAATGCAGAAAAATCAGATAATGATGTCATTATTCTAGATGATACAAT
TATTAAACAAAAGAAGGTTGCTTTTGATAACAAAACTTTTGAACCACAGA
TTACATCATTAATGTCAGTTTTACAAGAAATTCCCATTTGGGCCAGAGTA
TCAGTGCTTGGCAGAATCTATGACCTACAAGACACGTCCTCATCTTCAAA
ACAAAAGACAAAACTTAGAGAAGCCAAAATCATTGACCAATCAAATGTTT
CCCGTCAGATAACTTTCTTTGACCACTTTGATGAAGTTGATGAAGgGAAA
GTATACAAGATTACAAATGTAATGGTTGCAAAGTATGATAAGAAGAAAGT
CCTCAAAGTTTCGGAAAATTCTTCAATCCAAGAAATTCATGATAAACCTG
AAATTCCAAAACCAGCAACAACCACTCGCTCATCTGAAAAATGTTCCGGT
ATAGTTTGTATGGTCGACCCGAAATCCTTGAATACAAGATTTTTATGCGG
TAAATGTGAAAAAGAAACACAACGCAATCATGATAACTTGTTTTATTGTT
GCAATAACATATCAATCGAGTCAGAAATGGTGAAGAAAGAAGACGTCATT
TTCATGGTGAAATCGTCAGTCGGTGAAGAAAGTCTTAAAATTCAATTAAA
TTCGAAAAAGCATCTGCTGGAAAGTATGGTTGGTGTGCCGACAACAAATC
CTTTATTTCTCAAGTTATTTATGGGATCCAAAGTTGATGTTACTTATAAA
ATGGTTTCAACTGTGAAAGATGTTGTCGACATATCGGATTGTGCTCAACA
ATCAACATCTAAATTGGCTCCCCAAAACATTGACGAACAGCCTTCAACTG
ACTCTATAAATACAGAAAGTAACTGAATGGCATCTCCATCTCCATCAAAG
AAAACCAAAAAAGATCTAGTTAACTTGGAAGGCTACGTCAATTTTGTGGG
TTCACCAAGAAAAGCCAAGCAAAAGGCTGCCGACAAAAAGGAAATCGAGT
TCTTTGAAGTATCAGTCAATTGTGAAAACAATACGGTCCGTGCTGTTTGT
TATGATCTCGATCGCAGACCTTTGTTGGAAAAATTCAACAAAGAAAGTAA
CTCCTGCTGCTTGCTGAATGCAGAAAAATCAGATAATGATGTCATTATTC
TAGATGATACAATTATTAAACAAAAGAAGGTTGCTTTTGATAACAAAACT
TTTGAACCACAGATTACATCATTAATGTCAGTTTTACAAGAAATTCCCAT
TTGGGCCAGAGTATCAGTGCTTGGCAGAATCTATGACCTACAAGACACGT
CCTCATCTTCAAAACAAAAGACAAAACTTAGAGAAGCCAAAATCATTGAC
CAATCAAATGTTTCCCGTCAGATAACTTTCTTTGACCACTTTGATGAAGT
TGATGAAGgGAAAGTATACAAGATTACAAATGTAATGGTTGCAAAGTATG
ATAAGAAGAAAGTCCTCAAAGTTTCGGAAAATTCTTCAATCCAAGAAATT
CATGATAAACCTGAAATTCCAAAACCAGCAACAACCACTCGCTCATCTGA
AAAATGTTCCGGTATAGTTTGTATGGTCGACCCGAAATCCTTGAATACAA
GATTTTTATGCGGTAAATGTGAAAAAGAAACACAACGCAATCATGATAAC
TTGTTTTATTGTTGCAATAACATATCAATCGAGTCAGAAATGGTGAAGAA
AGAAGACGTCATTTTCATGGTGAAATCGTCAGTCGGTGAAGAAAGTCTTA
AAATTCAATTAAATTCGAAAAAGCATCTGCTGGAAAGTATGGTTGGTGTG
CCGACAACAAATCCTTTATTTCTCAAGTTATTTATGGGATCCAAAGTTGA
TGTTACTTATAAAATGGTTTCAACTGTGAAAGATGTTGTCGACATATCGG
ATTGTGCTCAACAATCAACATCTAAATTGGCTCCCCAAAACATTGACGAA
CAGCCTTCAACTGACTCTATAAATACAGAAAGTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057090-exon-scaffold_285-1491911889:624334..624478 | TCONS_00057090-exon-scaffold_285-1491911889:624334..624478 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1510915933:624334..624478 | TCONS_00057090-exon-scaffold_285-1510915933:624334..624478 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1575043694:624334..624478 | TCONS_00057090-exon-scaffold_285-1575043694:624334..624478 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1491911889:624725..624769 | TCONS_00057090-exon-scaffold_285-1491911889:624725..624769 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1510915933:624725..624769 | TCONS_00057090-exon-scaffold_285-1510915933:624725..624769 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1575043694:624725..624769 | TCONS_00057090-exon-scaffold_285-1575043694:624725..624769 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1491911889:625659..626153 | TCONS_00057090-exon-scaffold_285-1491911889:625659..626153 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1510915933:625659..626153 | TCONS_00057090-exon-scaffold_285-1510915933:625659..626153 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1575043694:625659..626153 | TCONS_00057090-exon-scaffold_285-1575043694:625659..626153 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1491911889:627264..628178 | TCONS_00057090-exon-scaffold_285-1491911889:627264..628178 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1510915933:627264..628178 | TCONS_00057090-exon-scaffold_285-1510915933:627264..628178 | Clytia hemisphaerica | exon |
| TCONS_00057090-exon-scaffold_285-1575043694:627264..628178 | TCONS_00057090-exon-scaffold_285-1575043694:627264..628178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:624334..628178 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
|
