TCONS_00057278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057278
Unique NameTCONS_00057278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057278 ID=TCONS_00057278|Name=TCONS_00057278|organism=Clytia hemisphaerica|type=transcript|length=2356bp
TATAATTTAGAATGGTGTCACTTACTTTTGAGCCGTAGATTTTACTAGGT
TACAAATCACCGGGAATGCTTCGTGGtcaaataaaaattcttatCCTGTG
ATTtctgataaatattttttgcggTATCATAATTCAAAGATTACTCCATG
TCTAATTGGCATAACAAaagaaatacaaattagtaATTAAAGAAAAAGAT
GCAAAACTGTAAatgtgtaaataaaaaaaactaaataaaatatttgtaaa
taaAGGTGCTTtggacaaaaaataaggtgtaGAAAGAAGTACAAAATATA
AGTTTATAGATAACCCTAAACTCTGAAAAAATGTCGACAGGTGGATGGAA
TGGATGGAATGGGTCTGTAAATTTACCACACGATTTATATAAAAAGCAGC
CTGGACCCAGTCGTAttatctgcttttcaaaatttactgatGATGCTGCA
TACGTCCTAATATAGTAAAAATCATTACATCTTAGTAAAAAAGAAGGAAT
GTGATCATGGGTAAAAATTAAAGATTCAAGACCGGAACATTAAATAGAAT
TCAGTAATCCCGATATAAGCGGAGGGCAACACAACAacaaaaagatttta
tcaaaaaatactatttccctattattattattgtatcAATAAATATATAT
AATGTATTACAAAAAATAATGGGTTGTTTGTTACACACTTCTtcatacac
acttttttttataagaatacactttatatgaatgtccatgatgaaaatgg
ccaaaaaattaagaataagttaagaatatcaccatcatggaattttgcta
ctaaagctTAGAATGgccatttttaaagcattttcaatcataaattgtca
agtaaggctcactcctttcacaaaaatgccattttatgcttgagacgtat
gtactaaatgttaaattttgGGTGAATTTCGAACCTAACCaaagaaaata
ccctaaaaatattttaggatgaatttcccaaaaaagttaagaatatccat
gatgaaatggatttacaccaatcttataaaaaaagcgtgtatttaaagAA
TCAAGTAGTTGCTACATCTCTGGGAAACTCTCAGGAAACTGAAGAATGAC
AATAGCACTCtacattttgaaagaattttgaggAGTTTGTAAACATCGGC
AGATGGTTAAAGGATAGAAAGGATAAaaattgacaccataatcaagctcc
aagagcgtcgaaatggttgttttacgCATTGGGCACGTGGCTCTAAAAAG
ATGAGACAGAGgtgagcttactcttcaatatgGTCAAATGATTAGAAAag
acactctacgttggagaaggggaaaaaactcgataaaccaaatttatctg
gtcgctggtcgtggtcgtcggtcgtggtcgccatttctagtcgatgttta
gaaactacCAGAGTTTTGACCTCAACAGAGTTTTTCTAATACAATGGTAA
TAAAAATCAGTTCCCTCAAGGTACACATCCCTTTCAGACTTATGGGCCAT
TCTgactttaataataataatgtgtTTGGCTGCAACATACTTTTCACAAC
ATTTTATAAAGATTTTCGAGAAATGTGTAACTAACTAAGGACAGTAAGAA
AGAATCATTCCCCTAACGTAAAATTGagtagaaaatagaaaaatagtaAA
GTAAAGTATCATAAATACAATCGTGGTCAAAACTGGTGTCCAATAACTCT
TTTCCACCGACAagtcccccctctccccccaaaatcaatgttggagttga
atttttgcacCTTTACAAGACTCAACATCAACACTGAtattggggggagg
ggggtggacaaacagttctgtccaggattgtagtaaaacataacaaaaaa
cACATATGTAATAGATTGGCAATATCGCTATATCTATAAAAAGGacaaaa
ttggttaattttctTTACGAATTTCACGttactattttttataaaatgta
aatttatCACACACTGACCCTCAAAAGGCTTCAATATCTAACACCACTAC
ATTTCTGCACACACACATTTTGTCATTTGTAGAGTTATTCCCAAATTGGG
TTATAAGGCGAGATCAACGGGACAGTGACAATGGGCTATCCTGACACAAA
TGACATTAGCGAAGTTAAGTATCAGTAGATATTTTGGAACGACGAACGTT
TTTTCTCtaatacaaaaaatcaagcggATATTTGTTCTAGAAGCAACGTA
GATTATTTTACGGGGTAAGTCTGTCTTTCTTTCGGACTACATACCCGTCG
GAACAAccgtggggaggctgaaggctcaaatggAATAAAATTCAATagga
atttgaggaaaaaatctcattttgtggtgaggctgaagtctccccccggg
gggggg
Run BLAST on NCBI

transcript from alignment at scaffold_286:120975..123330

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057278 ID=TCONS_00057278|Name=TCONS_00057278|organism=Clytia hemisphaerica|type=transcript|length=2356bp|location=Sequence derived from alignment at scaffold_286:120975..123330 (Clytia hemisphaerica)
cccccccccggggggagacttcagcctcaccacaaaatgagattttttcc tcaaattcctATTGAATTTTATTccatttgagccttcagcctccccacgg TTGTTCCGACGGGTATGTAGTCCGAAAGAAAGACAGACTTACCCCGTAAA ATAATCTACGTTGCTTCTAGAACAAATATccgcttgattttttgtattaG AGAAAAAACGTTCGTCGTTCCAAAATATCTACTGATACTTAACTTCGCTA ATGTCATTTGTGTCAGGATAGCCCATTGTCACTGTCCCGTTGATCTCGCC TTATAACCCAATTTGGGAATAACTCTACAAATGACAAAATGTGTGTGTGC AGAAATGTAGTGGTGTTAGATATTGAAGCCTTTTGAGGGTCAGTGTGTGa taaatttacattttataaaaaatagtaaCGTGAAATTCGTAAagaaaatt aaccaattttgtCCTTTTTATAGATATAGCGATATTGCCAATCTATTACA TATGTgttttttgttatgttttactacaatcctggacagaactgtttgtc cacccccctccccccaataTCAGTGTTGATGTTGAGTCTTGTAAAGgtgc aaaaattcaactccaacattgattttggggggagaggggggactTGTCGG TGGAAAAGAGTTATTGGACACCAGTTTTGACCACGATTGTATTTATGATA CTTTACTTtactatttttctattttctactCAATTTTACGTTAGGGGAAT GATTCTTTCTTACTGTCCTTAGTTAGTTACACATTTCTCGAAAATCTTTA TAAAATGTTGTGAAAAGTATGTTGCAGCCAAacacattattattattaaa gtcAGAATGGCCCATAAGTCTGAAAGGGATGTGTACCTTGAGGGAACTGA TTTTTATTACCATTGTATTAGAAAAACTCTGTTGAGGTCAAAACTCTGgt agtttctaaacatcgactagaaatggcgaccacgaccgacgaccacgacc agcgaccagataaatttggtttatcgagttttttccccttctccaacgta gagtgtctTTTCTAATCATTTGACcatattgaagagtaagctcacCTCTG TCTCATCTTTTTAGAGCCACGTGCCCAATGcgtaaaacaaccatttcgac gctcttggagcttgattatggtgtcaatttTTATCCTTTCTATCCTTTAA CCATCTGCCGATGTTTACAAACTcctcaaaattctttcaaaatgtaGAGT GCTATTGTCATTCTTCAGTTTCCTGAGAGTTTCCCAGAGATGTAGCAACT ACTTGATTctttaaatacacgctttttttataagattggtgtaaatccat ttcatcatggatattcttaacttttttgggaaattcatcctaaaatattt ttagggtattttctttGGTTAGGTTCGAAATTCACCcaaaatttaacatt tagtacatacgtctcaagcataaaatggcatttttgtgaaaggagtgagc cttacttgacaatttatgattgaaaatgctttaaaaatggcCATTCTAag ctttagtagcaaaattccatgatggtgatattcttaacttattcttaatt ttttggccattttcatcatggacattcatataaagtgtattcttataaaa aaaagtgtgtatgaAGAAGTGTGTAACAAACAACCCATTATTTTTTGTAA TACATTATATATATTTATTgatacaataataataatagggaaatagtatt ttttgataaaatctttttgtTGTTGTGTTGCCCTCCGCTTATATCGGGAT TACTGAATTCTATTTAATGTTCCGGTCTTGAATCTTTAATTTTTACCCAT GATCACATTCCTTCTTTTTTACTAAGATGTAATGATTTTTACTATATTAG GACGTATGCAGCATCatcagtaaattttgaaaagcagataaTACGACTGG GTCCAGGCTGCTTTTTATATAAATCGTGTGGTAAATTTACAGACCCATTC CATCCATTCCATCCACCTGTCGACATTTTTTCAGAGTTTAGGGTTATCTA TAAACTTATATTTTGTACTTCTTTCtacaccttattttttgtccaAAGCA CCTttatttacaaatattttatttagttttttttatttacacatTTACAG TTTTGCATCTTTTTCTTTAATtactaatttgtatttcttTTGTTATGCCA ATTAGACATGGAGTAATCTTTGAATTATGATAccgcaaaaaatatttatc agaAATCACAGGataagaatttttatttgaCCACGAAGCATTCCCGGTGA TTTGTAACCTAGTAAAATCTACGGCTCAAAAGTAAGTGACACCATTCTAA ATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036083XLOC_036083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057278-exon-scaffold_286-1491911889:120975..123330TCONS_00057278-exon-scaffold_286-1491911889:120975..123330Clytia hemisphaericaexon
TCONS_00057278-exon-scaffold_286-1510915933:120975..123330TCONS_00057278-exon-scaffold_286-1510915933:120975..123330Clytia hemisphaericaexon
TCONS_00057278-exon-scaffold_286-1575043694:120975..123330TCONS_00057278-exon-scaffold_286-1575043694:120975..123330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:120975..123330 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (3.90677 tpm) - - (31.9575 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.8317 12.1086 5.45904 5.46033 23.0663 16.0654 28.8955 31.9575 13.9952 16.8701 11.6969 10.0813 6.28282 6.02328 3.90677 4.06761 6.16216 6.88685 5.10986 4.07974 8.53243 8.35375 8.95208 8.43693 5.78779 6.93037 7.01438 5.98055 6.30408 4.84428
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
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