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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057241 ID=TCONS_00057241|Name=TCONS_00057241|organism=Clytia hemisphaerica|type=transcript|length=2715bpRun BLAST on NCBI protein sequence of TCONS_00057241-protein >TCONS_00057241-protein ID=TCONS_00057241-protein|Name=TCONS_00057241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp LWKRSGAWFFNSMPKYTLPEKEEYRYGMMNRGTGSLYDGTDSPMSKGSVYRun BLAST on NCBI transcript from alignment at scaffold_286:289427..303329- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057241 ID=TCONS_00057241|Name=TCONS_00057241|organism=Clytia hemisphaerica|type=transcript|length=13903bp|location=Sequence derived from alignment at scaffold_286:289427..303329- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_286:289427..303329- >TCONS_00057241 ID=TCONS_00057241|Name=TCONS_00057241|organism=Clytia hemisphaerica|type=CDS|length=21099bp|location=Sequence derived from alignment at scaffold_286:289427..303329- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057241 vs. Swiss-Prot (Human)
Match: DOC2B (Double C2-like domain-containing protein beta OS=Homo sapiens GN=DOC2B PE=1 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 8.642e-75 Identity = 147/333 (44.14%), Postives = 201/333 (60.36%), Query Frame = 2
Query: 686 EQDIDALFQDY--------------------EKEQANKGVEQKEYTGSCGMIEFTLQYDQNTQELLVIVHNCKGLKGDKGKTPSLPYVKTYILPEAQKATKKRTVALKKVADPVYNETLVYYGVSPIDIENKGLKLCVMDENK---NSVIGETSIPMKTLSTRPVQQFRRILDLKSNDSALFLDT--KKTLSNPGRIELALHYLSKQGKLVVGVIRCSGLLAMDPNGYSDPYVKCYLLPDPHXXXXXXXXXXXXXLNPEFNEEFTYKIPHSELAKRTLHISVWDHDVGRSNDFIGGVTLGIEASGDLLRHWFETLQTQDRRVIKWHTLTETCP 1609
++D+D LF Y E E G E + T + G ++F+L YDQ L + KGLK + PYVK ++LP A KA K RT L+ +P +NETL YYG++ D+ K L++ V DE+K N IGET +P+K L + F L+ L +D K+L GRI ++L Y S++ L+VG++RC+ L AMD NGYSDPYVK YL PD K++K KT VKKKTLNPEFNEEF Y+I H +LAK++L ++VWD+D+G+SNDFIGGV LGI A G+ L+HWF+ L+ +D+R+ +WHTLT P
Sbjct: 80 DEDVDQLFGAYGSSPGPSPGPSPARPPAKPPEDEPDADGYESDDCT-ALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKTLRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTKTFNICLE-----KQLPVDKTEDKSLEERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANGYSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDIGKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLTSELP 406 The following BLAST results are available for this feature:
BLAST of TCONS_00057241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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