TCONS_00057244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057244
Unique NameTCONS_00057244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=transcript|length=466bp
aagataaaagataaaaaaacaagatGGTGGACGTAGCATATGACAACAAT
GACAGGTGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGGTT
ACAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGA
AACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGGTTTTAGAG
AAGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGGAACTTGGT
GAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAACTA
CATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCAGA
TACTGTTTCAAATGTAGTAAGATGGTGTGCCCAAAATGTAGCATCGAAAC
GAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTGTGTTTTATGTT
TTGAGGAGCGGCAGGG
Run BLAST on NCBI

protein sequence of TCONS_00057244-protein

>TCONS_00057244-protein ID=TCONS_00057244-protein|Name=TCONS_00057244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MVDVAYDNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDE
HNILKKVLEKKEQIQKQEQARIGNLVKKLDDMRSQVLGDGTTTCLICGTK
AGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ
Run BLAST on NCBI

transcript from alignment at scaffold_286:304859..311555-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=transcript|length=6697bp|location=Sequence derived from alignment at scaffold_286:304859..311555- (Clytia hemisphaerica)
AAGATAAAAGATAAAAAAACAAGATGGTGGACGTAGCATATGACAACAAT
GACAGGTGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGGTA
TGTCACCCAAAATCTTTTTCTTTTGTAATAAAAATAGCCAAAACAAAGAA
TGAAGGTTCAACCTATTTGCCAGATGTCGGTTTAAAATCGAATTTTCAAT
AAACTTAATAGAAAACCTCTGCCAAATAAGTCGAGACCTCTCTTGATTCT
AGTCGGAAAATGCCGACACCAGCAAAGAAATCGAAATGCTCGGCACAAAA
ATGGTTGAATTTTAGTTTTTTTATGGTAGGTCACTATTTTCTTTGCATTT
CATAGAAGCTTGACTACAAGTTATCTGGCACCCGATGTAGAAATTTTCTT
CCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTTCAACATTACATTAC
GGAATTTCGCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAAAAACAAAATA
GAAATAACATTGTACACAAAAAAGCCTGAAAGAAGAGAAAAGTCATAATC
AGCATCTATAATAACACTAAAAGAAAAACTAAAGCTATAGTAAATGAATA
CAAACCCTCAATGAACACTTTTGTGAAGTTTAATAAAGATTTTATCCAAG
AAACTTCAGTTCTGGAACACTGAAGTCGGTTTGACGGTTGTCGGCCGGTG
GACAACAGTTATATTTGGAGGACGGTCTAAGATAGATAACAACATAAAAG
TTACTGATAAAAGCCTAAGCCCATAGGAACATACCTGCTTTAGTTTCTTT
GGTCTTTGAATGGTATAAAATTTGAGAAAGTGTAGAAAAATTCAGCCATC
AAAACAAACAAAAACAAAAGTTATGATTATCAACTTTTCTGTGGTAGAAA
CATATTTTTTGGGCTGGTGCACATACAGAAATTACACTGGATACTAAAAC
TAATATTCAGGGAGTGATAAGTACAGTTAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAATGGATGACTAC
TATTTCTCTCCGATGGTATATTGGCCCGCTCCTTTAGAGCTTTAGCGTGG
GCGGCCGCCAATACGCCATCGGAATATCAGATAAGACTACAAGTCAAACT
TTTTGTCTGAGGCGATTTTTTCACCTTCTAGCCGTCAATAGATTCTAATA
GGAGGGTATAGAAATCATCTCAGGCTAGTTTATGTTTACCTTTAATCTCT
GAATTAGGCCTGATGCACTGACCTTTACAAGTCCTGAACTAAACTATATC
TGCCATTTTGATCTGAGTTTTTTTTTTTTTTTTTGAAAAAAGTACCCGTA
AATTGGCCATTGAAGTGCTACATCATTACAAGAAGTATTCAAGGAAAAGT
AGATCTAGCACTCTATCGAGTAGTGCTACAATTAGGTTGCCACCTTCAAA
ATAATTCTGATCAAAGATTTTGGTTGGCCGGGATGGAGAAACTCCCTCCA
CTCTATATAAAGCTTATTTACCAAACTCCCAAATTTTGATTTAAGGATGA
ACACCAAAATTTAAACTAATTAATTTTTCTGTCTTAGTGATGAAAAATGT
GCTACCTCTCTTCTTACTCAATCCTTCTTTAGGTTACAGACAGGATGGTC
AAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGAAACATTCATTGACGA
CGGACGAACACAACATCTTGAAGAAGGTTTTAGAGAAGAAAGAACAAATA
CAAAAACAAGAACAAGCTAGGATAGGGTAAGCGACGGGCCTTGATTTGTT
GTCCCTATAAGGAAAAAATAGATATACCCAAAGGTATTCGAGGCGGATCT
TCACGTAGGATTTGAAGCAACATGTATCCTTCGTGAGATTCCAGCCCTTT
GTTGCTGTACACAAACGCTGGATTGAAAATTACACCATTTACCGCCAGAT
TTTGAAAAAACGTGCCACACGAAAAAAACAAACAAAGAAAACGTTAGATT
GAATCCGTCGTCCGAAATATCGCGCAAATCTAAAGGCATTTCTTTCGCTG
CCAGGCAGGGTCTGTTTTCCTTAGATTACCCGTATCCCATAAAGGTGGCT
GGAGTCTCTACGCAATTATTGGTACCAAATATCTTGGCTGTTTTCCGAAA
TTTATGCATGGGCCTATGGGCGAACTTTTTAATAAAGCTACTAACAGGCC
TTTTAATAATTTTGAGTTCAACACCTGCCTCGTTATGAAACCATTGCCAA
GGTGATTGAATCCCTTGAGTCTTCAAGTGTTACTTTTTAAATAGAGTAAG
TTTCTGATGAACTCTTCTGCGAACCTGTTACTATAACAATAGTTTGAAAA
CGAGGTTCTTGTGACGTAATCTATGGAAAGGTCTGAAAGGTCTACACTCT
TTATTTTATAAGCATAACCTTTATAAGCATAGGAGGTATGCTTATAAAAA
AGCTGAAATGCAAAAAAAAAATCGTGAAGCTTTTCTAAAACGCTGATCTT
TTGAGGGTTAATTTAAAAGCTGTTTGAGCTTTATTAGACCAAAGATTTTC
ACTAAGCGTATTGAGTCTCGACCCGATTTTCCAGTATACTTATGAAAAAA
GAGTGTATTGTGTATTCATCTGAAATTCCGTAATCAACCTGACGGTCTTT
CAAGCTATTTTGTTGGATTAGGTTGACATTATAGGGCCCATGGGCGCCAA
GCGTATCAGTGAAGGGTTTAGGTTCTAACGCATTTTGGGTGCGAAGCGTA
TCAGTGAAAATGGGCGGAGAAGTGGGCGGGTTTCCTTTCGCTTATTCAAT
TCACCTTTAGGAACCAAGCGTATCAGTCGCTCTCACTGATACGCTTGGCG
CCCAATGGGCCCTGTATTGTCAACCTGGTCCATTTTATTGATTCTCCTAC
AGGAACTTGGTGAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGA
TGGCACAACTACATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAG
ATCAACTCAGATACTGTTTCAAATGTAGTAAGGTATGTCGGGGAAACTAA
AGTTTAGTTGGCGAAATTTATTTTACCCAATTTGGGTATGGGTGCTAACA
ACATTTTCTTTTTCGGCTAAGGGACTAAATCTATTCCTAGTTTTTTTTTC
TGATAATGATTTTCACAAAAACAGAAGCAGTCTTAGTATAGAAATCATTT
TCATCTCTTCGTATTTTTACTGAGAGCACTCAGCCTAGGTCAAATATCCT
AAACTTAGTATCATTCTCATGATCAATAAGTATTACTTCCACGCACCGTG
GTTATATGGATTTTTAAGAAAATGATCCAACGCGCAGTGGGCAATCACTA
ACGAGTTTATGTATGTGTAGTTTGCTGCAACGGAGACAATTAACTTCAGA
TTTTCTAGATCCTGACTAAGGGCGACATTAAGTCAGCACCTTTACCGTCC
TCGATTTGGCGGGTCAAAACTGTAGGTTATTCCAAATCCCTCCAGTCAAT
CCGCTGTCCTCAAAAGTGCAAATACATAAACTCGCTATCATAAGATTTAC
GCTTAATATGTTGGTTGGACTTCCATTTTACTACCTGGCTTATTGATATC
ATTCCCAATTTGTAAGAGAAACATAAATGTCATGTCTTTTCTGATCTGAA
TTTACCGTTATTGTCCTGACCAACTACCATCCACGTTATGGTCATTTCGT
TTCGAAAGTCATTCCAAAGTAATTAAAAGTAGACCACACTGGACCTATTC
TTCTATGGCTAAGTTGTCTTTGTAGCCCCATTTTTATCGAAAGAAAGACA
ATTTTAAAGCGAGGAAGAAACTCATTAATACTAGTAATTATAATTAGAAA
CCACTTAAAATAATAGTAACGTTGTATTGGTTCCGTGTAAGAACCAGACG
AAAATTTTATGCAACTAGACCAGTGTTTTAAATTGTCCCCATGCATACCA
CAAGGAATTCTGTTTTTTTTTTCTTATTAGCGTTATTTTTTTGTCTCTGA
TGCAATAAGGGCCGGATTAAGGGATCAGAATTAAATTAGGGCCGGGCTAA
AAGCGAAAAAAATAGCTTTGCCGTAATAAGGACCAAAATTAGGGTTTGCG
TAAAAAGAGGCGATAAGGTATATAAATTTCGAATTATTTTGCTTTATTTT
AGATGGTGTGCCCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTAT
TCTGGCAAAGTGTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGG

Coding sequence (CDS) from alignment at scaffold_286:304859..311555-

>TCONS_00057244 ID=TCONS_00057244|Name=TCONS_00057244|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_286:304859..311555- (Clytia hemisphaerica)
ATGGTGTGCCCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTATTC
TGGCAAAGTGTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGAACTTG
GTGAAGAAGTTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAAC
TACATGTCTAATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCA
GATACTGTTTCAAATGTAGTAAGGTTACAGACAGGATGGTCAAGTTACCA
ACAAGACGTCTTTTCAGCGTCCAAGAAACATTCATTGACGACGGACGAAC
ACAACATCTTGAAGAAGGTTTTAGAGAAGAAAGAACAAATACAAAAACAA
GAACAAGCTAGGATAGGATGGTGGACGTAGCATATGACAACAATGACAGG
TGGAATATCCCTGATGATCGACAACTTGCTCTGCGTGGAAGATGGTGTGC
CCAAAATGTAGCATCGAAACGAAACTATCACTTGAGTATTCTGGCAAAGT
GTATTCTTGTGTTTTATGTTTTGAGGAGCGGCAGGAACTTGGTGAAGAAG
TTGGATGATATGAGATCACAAGTTCTCGGTGATGGCACAACTACATGTCT
AATATGTGGCACCAAAGCTGGACTACTCAAAGATCAACTCAGATACTGTT
TCAAATGTAGTAAGGTTACAGACAGGATGGTCAAGTTACCAACAAGACGT
CTTTTCAGCGTCCAAGAAACATTCATTGACGACGGACGAACACAACATCT
TGAAGAAGGTTTTAGAGAAGAAAGAACAAATACAAAAACAAGAACAAGCT
AGGATAGGATGGTGGACGTAGCATATGACAACAATGACAGGTGGAATATC
CCTGATGATCGACAACTTGCTCTGCGTGGAAGATGGTGTGCCCAAAATGT
AGCATCGAAACGAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTG
TGTTTTATGTTTTGAGGAGCGGCAGGAACTTGGTGAAGAAGTTGGATGAT
ATGAGATCACAAGTTCTCGGTGATGGCACAACTACATGTCTAATATGTGG
CACCAAAGCTGGACTACTCAAAGATCAACTCAGATACTGTTTCAAATGTA
GTAAGGTTACAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGC
GTCCAAGAAACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGG
TTTTAGAGAAGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGA
TGGTGGACGTAGCATATGACAACAATGACAGGTGGAATATCCCTGATGAT
CGACAACTTGCTCTGCGTGGAAGATGGTGTGCCCAAAATGTAGCATCGAA
ACGAAACTATCACTTGAGTATTCTGGCAAAGTGTATTCTTGTGTTTTATG
TTTTGAGGAGCGGCAGGAACTTGGTGAAGAAGTTGGATGATATGAGATCA
CAAGTTCTCGGTGATGGCACAACTACATGTCTAATATGTGGCACCAAAGC
TGGACTACTCAAAGATCAACTCAGATACTGTTTCAAATGTAGTAAGGTTA
CAGACAGGATGGTCAAGTTACCAACAAGACGTCTTTTCAGCGTCCAAGAA
ACATTCATTGACGACGGACGAACACAACATCTTGAAGAAGGTTTTAGAGA
AGAAAGAACAAATACAAAAACAAGAACAAGCTAGGATAGGATGGTGGACG
TAGCATATGACAACAATGACAGGTGGAATATCCCTGATGATCGACAACTT
GCTCTGCGTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036060XLOC_036060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057244-exon-scaffold_286-1575043694:311459..311555TCONS_00057244-exon-scaffold_286-1575043694:311459..311555Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1575043694:307330..307473TCONS_00057244-exon-scaffold_286-1575043694:307330..307473Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1575043694:306074..306203TCONS_00057244-exon-scaffold_286-1575043694:306074..306203Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1575043694:304859..304953TCONS_00057244-exon-scaffold_286-1575043694:304859..304953Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1510915933:311459..311555TCONS_00057244-exon-scaffold_286-1510915933:311459..311555Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1510915933:307330..307473TCONS_00057244-exon-scaffold_286-1510915933:307330..307473Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1510915933:306074..306203TCONS_00057244-exon-scaffold_286-1510915933:306074..306203Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1510915933:304859..304953TCONS_00057244-exon-scaffold_286-1510915933:304859..304953Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1491911889:311459..311555TCONS_00057244-exon-scaffold_286-1491911889:311459..311555Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1491911889:307330..307473TCONS_00057244-exon-scaffold_286-1491911889:307330..307473Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1491911889:306074..306203TCONS_00057244-exon-scaffold_286-1491911889:306074..306203Clytia hemisphaericaexon
TCONS_00057244-exon-scaffold_286-1491911889:304859..304953TCONS_00057244-exon-scaffold_286-1491911889:304859..304953Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057244-proteinTCONS_00057244-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:304859..311555 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9796	18.3078	18.2874	14.5272	39.0941	32.0695	41.5302	44.5293	30.0127	40.922	23.6361	23.536	38.3765	39.6637	22.8106	20.9462	34.7162	33.4586	35.8059	46.5283	25.2259	21.8743	21.8427	30.6507	49.0587	44.9742	27.6361	21.6154	32.1762	29.5042
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027413GROEL-like_equatorial
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
Blast
[Close]
BLAST of TCONS_00057244 vs. Swiss-Prot (Human)
Match: RPH3L (Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.330e-24
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 3 
Query:   24 MVDVAY-DNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDEHNXXXXXXXXXXXXXXXXXARIGNLVKKLDDMRSQVLGDGTTTCLICGTKAGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ 464
            M D  +   ND+W  P+DRQLALR +LQTGWS +        +K  L+  E   + +V+++ E++   EQ RIG LV++L+ MR  V+G+G + CL+CG   G L     +C  C K VC KC IE   S      ++ C +C E+R+
Sbjct:    1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEA--SPGQKRPLWLCKICSEQRE 146
The following BLAST results are available for this feature:
BLAST of TCONS_00057244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPH3L9.330e-2438.51Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 S... [more]
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