TCONS_00057183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057183
Unique NameTCONS_00057183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057183 ID=TCONS_00057183|Name=TCONS_00057183|organism=Clytia hemisphaerica|type=transcript|length=1130bp
AGTAGAAATAAAATATACTTGCTAATATGTGGAAACCATGTTAGCAAATT
TAGACTAAATCTCTTTAGAGTGATTTCCACAACTGCCAATATTTTCCCAA
AGAGACTAGTTGTCAATTAGAACAGGTGTTGGTAAATAGCTTACCGTTTT
CTTGCTCAAAGATTCTTGAAACAACTCTTGAAGTATCAGCCGACTGGCGC
GCTAGATGACTCATAACAGCCAAAACATCACACCGTATAGCGTTATCGCT
GCTTGAGAACAACAAATCTTTGAACAGCATATCAAAATTTTCCGGTCCGT
TTAAAAGACTTTTCAGTTGCGATATGAACATCTCGTCTGTTAACACCAAA
CGGGCAATCAAACCTACAACAATCGAAGTTTCCTCTTGGTTGTCAATCAT
ACTTGGTTTAGACAGCAAAAAAAACAGCGATCCTATAGTTGAGCTTTGAT
ATAACGAACATAGAATCTCATACAAGAGACATTGATCAAGATCCAATGCA
AAAGGAAGACAAAGAATTTTAATCACATTTTCAGTAAGTGTGTCCACTCT
ATCTATATTGTCCGTGAGACCATTCCCACTACaatatttcactttttcgt
CATCTTTTATCTGTAGTAATGCACTTACAACGAACATTAAACTCGGTAAA
TCATTTTCTGCAATACGGCTGTAAAAAGAGCTTGGAAATTTACTGAATAT
GTTCACCAGTAAGGAAACAAGCTGTGATAGGCTTTGATAGGATATCAGAT
TCCATTTGAAGTATTGGTAAGGTTGGTCTTCTTCCATTGAGTCCTCAGCC
AAACAATATATGATTTGATTTAAGATTTGGAGAATCGAGTCTTCGCATAA
ACCCtctatttgagtaaataatgaTATTAAACCATCATAGAATCCATATT
TCATTGGCAATTCTATGTCTGGTGATGTGGTTTTTGTGGTTATCATTTTT
TTAGCAAATTGCTGGTGTAATAAATTGTTGTCTTTGGTGTTTTGtgattg
ttggaaagatattagtagaAAGAAAAGAGATTCGTTTGTTAAGAGTATTG
ATTGCTCGTATCTATCTTCGGTTTCATCGAGGGGTAGTTTCAAGTATTCA
GTTTGCAATGTCTGGACTGACGGAAGCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_286:357766..358948+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057183 ID=TCONS_00057183|Name=TCONS_00057183|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_286:357766..358948+ (Clytia hemisphaerica)
AGTAGAAATAAAATATACTTGCTAATATGTGGAAACCATGTTAGCAAATT
TAGACTAAATCTCTTTAGAGTGATTTCCACAACTGCCAATATTTTCCCAA
AGAGACTAGTTGTCAATTAGAACAGGTGTTGGTAAATAGCTTACCGTTTT
CTTGCTCAAAGATTCTTGAAACAACTCTTGAAGTATCAGCCGACTGGCGC
GCTAGATGACTCATAACAGCCAAAACATCACACCGTATAGCGTTATCGCT
GCTTGAGAACAACAAATCTTTGAACAGCATATCAAAATTTTCCGGTCCGT
TTAAAAGACTTTTCAGTTGCGATATGAACATCTCGTCTGTTAACACCAAA
CGGGCAATCAAACCTACAACAATCGAAGTTTCCTCTTGGTTGTCAATCAT
ACTTGGTTTAGACAGCAAAAAAAACAGCGATCCTATAGTTGAGCTTTGAT
ATAACGAACATAGAATCTCATACAAGAGACATTGATCAAGATCCAATGCA
AAAGGAAGACAAAGAATTTTAATCACATTTTCNTTTGATCAAGATCCAAC
GCAAACGGAAGACATAGAATTTTAATCACATTTTCAGTAAGTGTGTCCAC
TCTATCTATATTGTCCGTGAGACCATTCCCACTACaatatttcacttttt
cgtCATCTTTTATCTGTAGTAATGCACTTACAACGAACATTAAACTCGGT
AAATCATTTTCTGCAATACGGCTGTAAAAAGAGCTTGGAAATTTACTGAA
TATGTTCACCAGTAAGGAAACAAGCTGTGATAGGCTTTGATAGGATATCA
GATTCCATTTGAAGTATTGGTAAGGTTGGTCTTCTTCCATTGAGTCCTCA
GCCAAACAATATATGATTTGATTTAAGATTTGGAGAATCGAGTCTTCGCA
TAAACCCtctatttgagtaaataatgaTATTAAACCATCATAGAATCCAT
ATTTCATTGGCAATTCTATGTCTGGTGATGTGGTTTTTGTGGTTATCATT
TTTTTAGCAAATTGCTGGTGTAATAAATTGTTGTCTTTGGTGTTTTGtga
ttgttggaaagatattagtagaAAGAAAAGAGATTCGTTTGTTAAGAGTA
TTGATTGCTCGTATCTATCTTCGGTTTCATCGAGGGGTAGTTTCAAGTAT
TCAGTTTGCAATGTCTGGACTGACGGAAGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036033XLOC_036033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057183-exon-scaffold_286-1491911889:357766..358291TCONS_00057183-exon-scaffold_286-1491911889:357766..358291Clytia hemisphaericaexon
TCONS_00057183-exon-scaffold_286-1510915933:357766..358291TCONS_00057183-exon-scaffold_286-1510915933:357766..358291Clytia hemisphaericaexon
TCONS_00057183-exon-scaffold_286-1575043694:357766..358291TCONS_00057183-exon-scaffold_286-1575043694:357766..358291Clytia hemisphaericaexon
TCONS_00057183-exon-scaffold_286-1491911889:358345..358948TCONS_00057183-exon-scaffold_286-1491911889:358345..358948Clytia hemisphaericaexon
TCONS_00057183-exon-scaffold_286-1510915933:358345..358948TCONS_00057183-exon-scaffold_286-1510915933:358345..358948Clytia hemisphaericaexon
TCONS_00057183-exon-scaffold_286-1575043694:358345..358948TCONS_00057183-exon-scaffold_286-1575043694:358345..358948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:357766..358948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.703491	0.794244	0	0.481118	0.423791	0.667039	0.913982	0.521378	0.80403	1.01121	0.0899278	0.126384	0.214853	0.35415	0.474576	0.928215	0.755225	0.785481	0.316185	0.418715	0.764075	0.278168	1.09987	0.582076	0.243647	0.549061	0.540117	0.476853	1.19905	1.61166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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