TCONS_00057253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057253
Unique NameTCONS_00057253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057253 ID=TCONS_00057253|Name=TCONS_00057253|organism=Clytia hemisphaerica|type=transcript|length=1617bp
TGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTATGCTGTTTATCAT
GATTGTGATCCCAGACACGATAAGAAGATAAATAGTAATGACCAGatCTT
AGCCTATTTTCTTGTCAGTAATTTATCACATTTGAAAGGAGTTCCTGGAA
TTTTCATGGCAAGTCTGTTCAGTGGAGCTCTAAGCACTGCATCTTCAGGC
CTGAACTCTTTAGCTGCAATCACGTTCGAAGATATTGTCAAGTTTCGGCT
ACCGGCTGAATATCAAGATAAATCAGTCAAATACACCAAGTACATAGcat
GTCTTTATGGACTGGTAGTATTGGGAGGTAGTTTTATCGTCGCAAACGCT
GGCAGTATGGTCACTCAGATGACAGTGAGTATACAGGGTATTGTTGCAGC
ACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCCTTGGGCTAATA
CTAAGGGTGCAGTATCTGGTTGCCTGTTCGGCCTCATCTTCACCGGTTTC
ATATGTGTAGGAGCCATTGTTTACCCACCCAACAAGGACGTCCTTCAAAC
GTCTATAAGAGGTTGTTCATCATTCAATACAACTGTTGCAAATACTACTG
ATGGTGTCTTTGTGAACCCTTTCAAGCCACACGAgGACCCAATAGCATCA
TTATTCAGTGTATCGTATTTATGGTATGCAACAATTGGATTATTTTCATC
CATCATTGTTGGATGTATCGTATCATTGCTAACTGgCAAAGAGAAGAATA
AAATTAGCAAGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTC
TGTTTCACTGGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAAT
ACACATGGAAAATGTCGAAAAATCATAATAGATTTTGCGtggaaataaaa
acattttctccagtttcttttcatttttgacaCCACTGTGTCGCGAACTC
ACTGAGactccagccccactggaaaagtcGCCCTAAATTTCTCTTTGTAG
GAAAAATACCCTCCATTTTAGAACCCACTGGGAAACTGACTTTGATATCA
TctccattcaaaattcaattaaaaccatccccactaggTTTTTTGAGCTT
GGAAAAATAGAATAAATATCCGCATTGGGATTTCGGAATAAGAAATCTTT
GTCCCCACTGTGGGATAAAATTCCAtcttagacgatgctatcgttcGTTT
TGAGGTTCAGTAAACGTATATGTGCAAAGTCAGGGCGTCATGGCGGCATA
CGGAAAaaatagtggcggtagagtttggaactGTAAACACCTTTGCCACT
GCTTACTCTGCCCCGGTCTAACCacccattttcaaatttataccGCCTCC
TAAACTATTTCCTTTTTCAGTGATCTCGTGTAGACGATATGATCGTCTAG
TTCCATCGGAGCTGCGAGAGANGCCCCGGTCTAACCacccgttttcaaat
ttataccGCCTCCTAAACTATTTCCTTTTTCAGTGATCTCGTGTAGACGA
TATGATCGTCTAGTTCCATCGGAGCTGCGAGAGAGGGGTGTTAAAACATT
TCTCCattgttcttttcatttttgtgaaatatttttaatttttcggtTCT
ACTGGAATGAGGTCTTT
Run BLAST on NCBI

protein sequence of TCONS_00057253-protein

>TCONS_00057253-protein ID=TCONS_00057253-protein|Name=TCONS_00057253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
STTCILAGLVMYAVYHDCDPRHDKKINSNDQILAYFLVSNLSHLKGVPGI
FMASLFSGALSTASSGLNSLAAITFEDIVKFRLPAEYQDKSVKYTKYIAC
LYGLVVLGGSFIVANAGSMVTQMTVSIQGIVAAPYFGMFVMGIFFPWANT
KGAVSGCLFGLIFTGFICVGAIVYPPNKDVLQTSIRGCSSFNTTVANTTD
GVFVNPFKPHEDPIASLFSVSYLWYATIGLFSSIIVGCIVSLLTGKEKNK
ISKELLFDYTPLKRCFCFTGSSRTVDINTRSEIHMENVEKS
Run BLAST on NCBI

transcript from alignment at scaffold_286:438648..444907-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057253 ID=TCONS_00057253|Name=TCONS_00057253|organism=Clytia hemisphaerica|type=transcript|length=6260bp|location=Sequence derived from alignment at scaffold_286:438648..444907- (Clytia hemisphaerica)
TGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTATGCTGTTTATCAT
GATTGTGATCCCAGACACGATAAGAAGATAAATAGTAATGACCAGGTATC
ATATTTTCATTTCTATATTTTTTAAAGGTTTTGTTTTTAAATAAGAGTGA
TATCGTTTGCCTATTCATCAATTTTGATTAACATGCTCTTTCACATTGGA
TTGACACAGTCCTGATATGAAATATGTGTCTGATATGAAACGGGAACATA
TATAATAAAACCTTTAAGTTAAGATTCTGCTCAGTCTTTTTTGTTTTGTT
TCTAAACTGGAAGCTAAGTTGGCTTCTTCCCATCCATTTGAGCTCACCCA
TTTCATTGGGCTTTTCCAGAAAAAAACCGTATACCTGTTGAGGAGGTCCG
TTTCCGTTCCAAGGAGATAAGGTTTGATATGCGGCGGAATTCCATAGGGA
GATACAAAAATATGTTAAAAACAACTGGGGAATTCCATGGGGGTAGCTTT
TCAAATCCTACTAAATTACAGAATTTCAGAGGGGTTTAAACCTGAAATTG
CCTGGAATTCGAGGGGGTTAACAACATTTCCAGCCACAGAGGGATGAACC
TCCTCAACAGGGGGTATATGGTTTTTTTCTGGAAAATCCCATTCTTTTTT
ATGTTGTAAAATATTATTAATATTTAATTTTCGCCTCATTCCCTAATCTT
TCTTTTTTTCAAGATCTTAGCCTATTTTCTTGTCAGTAATTTATCACATT
TGAAAGGAGTTCCTGGAATTTTCATGGCAAGTCTGTTCAGTGGAGCTCTA
AGGTACGATAGCTTTCTAAAAAATTTGAGGAATTTCATAGCTTCAACGTC
TCAAGCTAAATTTTACAAATTTATATATTACATTTCATGGAGTCAATCAA
TATTTATAATCTTTATGGTTTTGGTATAAATAAATTTCAACCGTCTCTCT
ATTGGTGCTTTTCTTTTTACGATACCCGAGGAGGGGGGTACTTAGGTAAA
ATGGGTGCCGGGTATGTGCGAGCCATAAGGGTTTTTTCACACCCTCGAAA
GTCTCTCAAGGGGGTCAAAAACCATTATAAAGAAAATTGAGTTTCTGTAA
GGGTCCAAAAACCACGAAATTCAAAATTTCCTTTCTCAAATAGTCGTGAT
TTAAAAAAATTTGGACAAAAATCTCTAAGGGTCCCAAAAACGCCAATTTT
TCCTTTCTTTTCTCTAATGGTCGATTTTCAAATTTTGGCTTGGACACCGT
TACCTCGCAAACCTAGTACTCCCCAGGCTACGATATTACTAGGAAAAACC
TCAATAGTGATTTAAAAAACTCTATAAAAAACTCTTTTCGCTAGAGGATG
AGCAGAAGCCTAATAAAAAACGAAATAAAAATATTATTTTTTTCCTCGTT
TCAATAGCACTGCATCTTCAGGCCTGAACTCTTTAGCTGCAATCACGTTC
GAAGATATTGTCAAGTTTCGGCTACCGGCTGAATATCAAGATAAATCAGT
CAAATACACCAAGTACATAGGTAAGTATTCCAGTTGACTAATTCGAACTC
GAACACGTGAAATATTATTTGTTCGAATTAGAATTATAAAAATTATATTT
ATAGAGGGTTTCTCCTTGACGGGGACTGGGAATTGGTTCAAAGATTTGAT
TAATGGAAGCTCGGATAAGCGAACTACTGTATCTGAATTGAAATACTATT
GCGGCAAAATACATGATAATACTCGAAAGGTGGGAGCAATATCTGAGCAT
AAAAACCGGTGATTTCAGACTCCATATAAGTTAGGGTTAAATTGTAGGAA
GTATTAAAATTTGATTTAATTTAATTTTCAGCTGACATATTCGGGGAGGG
TGGGGTGGTCTCACTGGTTCTGTGAAGCAGGGGTGAAATAATTAAATGAA
GCTACTGTCTGTCAAAAAATGTACGCGGACTATGTATCAAATTCTATAAA
TTTTATATTTTTAGCATGTCTTTATGGACTGGTAGTATTGGGAGGTAGTT
TTATCGTCGCAAACGCTGGCAGTATGGTCACTCAGGTATATAAACGTTCA
TTTATTACAAAATAAATTTCGCTATAGTTTTTTAGCAAAAAGCTAAGAAT
TTATCTCTTTTCCCGAGTCAGTAATTAGTTCCTCCGATTTTACTAGATAG
TCAATTACGGTATAATCTGAAATATGAAAACAAAATCAAGATTCAAGCAG
TGAATAAGCAATTTTGAATTATTTTTTAAAGACTAGATTCTTTTAATAAA
GACAAGCCTTTTTCTGGTACTTATATTTTTGACAATCTATCTTTTTATAT
CTATTATTTATGTACTCATTATAAGAATTTACAGGCTAAATATGAATGAA
AACTACCGCAAGAGGGAATTCCCTGACTGTTCTAGCCAAAGTTAGGGTCG
TCAAATATACCAGAAAGTGAAGAAGCAGCTGAAAGCAAAAAACTCTCTCA
TAAATTCAGCCAAGCTAAATGAAAATCGAACCCAACTAAAAGCCTGAGCG
TAAAAATTTGTGGGTCAATCCCCCATTCAATATGTTAGTTTCAAGAGTTT
AGCAGTAACTTTCTTTGTTATTTTTCTAGATGACAGTGAGTATACAGGGT
ATTGTTGCAGCACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCC
TTGGGCTAATACTAAGGTGAGATGCTTAAATTAGAATTACAAAACAGGCT
CGATGGACCGGGTACGGTTTGTCCTGACAGATACAGTTTGTTATTTTTCA
AAATATCCTAAATAGCTTATAGTTTAACGTACATCGGACTTTATCTGCTC
TAATTATGAGGCCCCCGGCGGTTTGCGTGGTGGCGTGGTTCAGCCTTTTT
TGGTGTGATGGCGTTGTCTTTGAATTCAAAAAGCATGATACGTACACCAC
TGTCTCACCGGTGAGACTTTTTTTCCTCAGTGGGGATAAAAATTCCTATT
GATTTCCTAATAGGGATATAAATTCTATTGTTCCAAGGTTAAAAATGTGG
ATGGTTTTGGAGTGCAATTTTTAAACATTGAATCTTAAATGGGGATGAAA
TTTTCCAGTTGGGCTAAAATTCCAGGGCATTTTCCCCACCAGGGACGAAA
TCTTTGCCGAATTTTCCAATGGGTCTCAGCGGGTCTGTGACACAGGGGTG
TATACGTAAAAATTTCTTTTTTGGTTTGACAGCGTGATGAGAAAATATTT
TTGGGGTGATGGCGCGATCAGAGTTTGTTTTTGACATTATGGCGTGATCG
GAGACTCCACTGGGGGTTTAAATCATACCTATCGTCAGCCAGAACCGAAA
AGTTTCAGCCAAAAAAGGTTGACCCATATAGAATATTTTTATCCAAGGAT
CATCCTATTAGCTCAATGCCAAAAAACTGCAATTGCATACATAAGTCTCT
CTAATCTAAAGGAGACTTACGAAACCCTTTATAAAGCGTGATGTACTTAT
CTTCTAACACAAACCTATTATTTCTCATTCAGGGTGCAGTATCTGGTTGC
CTGTTCGGCCTCATCTTCACCGGTTTCATATGTGTAGGAGCCATTGTTTA
CCCACCCAACAAGGACGTCCTTCAAACGTCTATAAGAGGTTGTTCATCAT
TCAATACAACTGTTGCAAATACTACTGATGGTGTCTTTGTGAACCCTTTC
AAGCCACACGAGTAAGTAGTCTACACTAAACCAACAACACAAAAAAGTCA
ATAGCGAGTTGATGTATCGAAGGATATCGAGGGCGACGGTAAATGAAGTT
GACACAAAAACAAATTTGATAGTTGATTAGCTCTATATATGTCCACCTAA
ACAGACGATGGTATTTTGGTGTTTTTACCGTCGTCGAGCAAAGTGGACGG
CGATTTTTGCAATATGTCAACTAGGTGCAAATAACTAGTGCGTATCTTAT
TTTGGATTTTAATGGGCTTATTGCTTTACAGGACCAAAATAGTAAGGGCG
AAAATTTTTGCAATTTTCCAAGAAAATATGGAATTTTTCCTCCAAAATTG
ACCAATTTTGTGCCAATTTTACCAAAAAATTGGCTTTTTATCACAATTTC
CTACCCTTACAGTGCAGTTCAGTCCAGTTTTGTAATTTCCTACCCTTACA
GTGCACTAGCTGAACTATGAAAAACCTACCCTTAAGGGCCGAATGTATGG
TAGGTCATTTACCTTGGGGGCCCCCCCCCCCCGGGATAATATAGGAGTAA
AAGTAGTAAAAGATTTTAAATGTTGGGTGTATTATTACCATCTGATATAC
TTGAAATTTAAAGAAGGTCAAATAATTTGTTTTTAGGGACCCAATAGCAT
CATTATTCAGTGTATCGTATTTATGGTATGCAACAATTGGATTATTTTCA
TCCATCATTGTTGGATGTATCGTATCATTGCTAACTGGTAGGTTGCTTGT
TTTTTAACCTTAAGTTCATATAACCAAGTGAGTAATAGGACTGCTCATAA
AGCATTTTGAGTGCAACGACTGGTTCATTTTGAAACCATTACGAAGGTGA
TTTGAGTCTTTAAGTGTTACTTTTATGAAAAGAGTAAACTTTTTTTAAAC
TATTTTGAAAATCAATTACCATAGCAATATTTTGGAAACAAGGTAAGCGT
TGCTAGTGACATGATTTATGAAAAGTTAAGGGTGACCTGCCCCAGCTGGC
ACACAACGTTGTTTCAACGTTTTTCTGACGTCCACAACGTCCATATAACG
TTAGATGAACGTTAAAACAACGTTGTGTGCCAGCTGGGGCTTGTCTCAAT
TCCTAAGCTGTCTCAATTCCTAAGCTGAAAGTAGAGGAGGACACAACCTT
CTTCGAATATCTTCTCTTTGACACTTCTCTTTAGTTGCTGGACATTGAGT
TCAGTAGAGCCGCACGTCTAACGTTACGCTACGTTCAGTTCCTTATATAA
AACATGCCTGGAATCTCCTGAATTACTTTACTTGTTAGCCCTTTACGCCG
CCCCCCTTGTGACTATGAAAATGTCTAGTTGTCTGTCAATTTCAGAATAA
CACAATATACCAAATATATAAATACAGTTGATTTTCGCTAATTCGAACTT
GAAAGGGGAATACTACTAGCAAGGCTCGAATTATAAAAAGTATTTCAAGA
GGGGACTTGAAATTAGTTCAAATTAAAGAAAGGTTTGATTAATTGAAGTT
CGAACATAGTATAAGAAAGCCGCGGCTTTCTTATACTATGCTTAGATCAA
CATCATGGTTCGAATAAGCGAAAGTCTACTGTAGAGAGGCTAAAGTCACG
CTAATAACTGCCAGTTTTAAAAATGGCAGATAAAAAAAATTATAGAAATG
TNAAAGTCACGCTAATAACTGCCAGTTTTAAAAATGGCCGATAAAAAATT
TTATAGAAATGCTTTTTTGTTGTTTTAGGCAAAGAGAAGAATAAAATTAG
CAAGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTCTGTTTCA
CTGGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAATACACATG
GAAAATGTCGAAAAATCATAATAGATTTTGCGTGGAAATAAAAACATTTT
CTCCAGTTTCTTTTCATTTTTGACACCACTGTGTCGCGAACTCACTGAGA
CTCCAGCCCCACTGGAAAAGTCGCCCTAAATTTCTCTTTGTAGGAAAAAT
ACCCTCCATTTTAGAACCCACTGGGAAACTGACTTTGATATCATCTCCAT
TCAAAATTCAATTAAAACCATCCCCACTAGGTTTTTTGAGCTTGGAAAAA
TAGAATAAATATCCGCATTGGGATTTCGGAATAAGAAATCTTTGTCCCCA
CTGTGGGATAAAATTCCATCTTAGACGATGCTATCGTTCGTTTTGAGGTT
CAGTAAACGTATATGTGCAAAGTCAGGGCGTCATGGCGGCATACGGAAAA
AATAGTGGCGGTAGAGTTTGGAACTGTAAACACCTTTGCCACTGCTTACT
CTGCCCCGGTCTAACCACCCATTTTCAAATTTATACCGCCTCCTAAACTA
TTTCCTTTTTCAGTGATCTCGTGTAGACGATATGATCGTCTAGTTCCATC
GGAGCTGCGAGAGANGCCCCGGTCTAACCACCCGTTTTCAAATTTATACC
GCCTCCTAAACTATTTCCTTTTTCAGTGATCTCGTGTAGACGATATGATC
GTCTAGTTCCATCGGAGCTGCGAGAGAGGGGTGTTAAAACATTTCTCCAT
TGTTCTTTTCATTTTTGTGAAATATTTTTAATTTTTCGGTTCTACTGGAA
TGAGGTCTTT

Coding sequence (CDS) from alignment at scaffold_286:438648..444907-

>TCONS_00057253 ID=TCONS_00057253|Name=TCONS_00057253|organism=Clytia hemisphaerica|type=CDS|length=7008bp|location=Sequence derived from alignment at scaffold_286:438648..444907- (Clytia hemisphaerica)
GCAAAGAGAAGAATAAAATTAGCAAGGAACTTTTATTTGATTACACGCCG
TTGAAAAGATGTTTCTGTTTCACTGGATCATCAAGAACAGTTGATATAAA
CACAAGAAGTGAAATACACATGGAAAATGTCGAAAAATCATAAGGACCCA
ATAGCATCATTATTCAGTGTATCGTATTTATGGTATGCAACAATTGGATT
ATTTTCATCCATCATTGTTGGATGTATCGTATCATTGCTAACTGGGTGCA
GTATCTGGTTGCCTGTTCGGCCTCATCTTCACCGGTTTCATATGTGTAGG
AGCCATTGTTTACCCACCCAACAAGGACGTCCTTCAAACGTCTATAAGAG
GTTGTTCATCATTCAATACAACTGTTGCAAATACTACTGATGGTGTCTTT
GTGAACCCTTTCAAGCCACACGAATGACAGTGAGTATACAGGGTATTGTT
GCAGCACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCCTTGGGC
TAATACTAAGCATGTCTTTATGGACTGGTAGTATTGGGAGGTAGTTTTAT
CGTCGCAAACGCTGGCAGTATGGTCACTCAGCACTGCATCTTCAGGCCTG
AACTCTTTAGCTGCAATCACGTTCGAAGATATTGTCAAGTTTCGGCTACC
GGCTGAATATCAAGATAAATCAGTCAAATACACCAAGTACATAGATCTTA
GCCTATTTTCTTGTCAGTAATTTATCACATTTGAAAGGAGTTCCTGGAAT
TTTCATGGCAAGTCTGTTCAGTGGAGCTCTAAGAGTACAACGTGTATCTT
GGCTGGTCTTGTTATGTATGCTGTTTATCATGATTGTGATCCCAGACACG
ATAAGAAGATAAATAGTAATGACCAGGCAAAGAGAAGAATAAAATTAGCA
AGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTCTGTTTCACT
GGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAATACACATGGA
AAATGTCGAAAAATCATAAGGACCCAATAGCATCATTATTCAGTGTATCG
TATTTATGGTATGCAACAATTGGATTATTTTCATCCATCATTGTTGGATG
TATCGTATCATTGCTAACTGGGTGCAGTATCTGGTTGCCTGTTCGGCCTC
ATCTTCACCGGTTTCATATGTGTAGGAGCCATTGTTTACCCACCCAACAA
GGACGTCCTTCAAACGTCTATAAGAGGTTGTTCATCATTCAATACAACTG
TTGCAAATACTACTGATGGTGTCTTTGTGAACCCTTTCAAGCCACACGAA
TGACAGTGAGTATACAGGGTATTGTTGCAGCACCTTATTTCGGAATGTTC
GTGATGGGAATATTTTTCCCTTGGGCTAATACTAAGCATGTCTTTATGGA
CTGGTAGTATTGGGAGGTAGTTTTATCGTCGCAAACGCTGGCAGTATGGT
CACTCAGCACTGCATCTTCAGGCCTGAACTCTTTAGCTGCAATCACGTTC
GAAGATATTGTCAAGTTTCGGCTACCGGCTGAATATCAAGATAAATCAGT
CAAATACACCAAGTACATAGATCTTAGCCTATTTTCTTGTCAGTAATTTA
TCACATTTGAAAGGAGTTCCTGGAATTTTCATGGCAAGTCTGTTCAGTGG
AGCTCTAAGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTATGCTGT
TTATCATGATTGTGATCCCAGACACGATAAGAAGATAAATAGTAATGACC
AGGCAAAGAGAAGAATAAAATTAGCAAGGAACTTTTATTTGATTACACGC
CGTTGAAAAGATGTTTCTGTTTCACTGGATCATCAAGAACAGTTGATATA
AACACAAGAAGTGAAATACACATGGAAAATGTCGAAAAATCATAAGGACC
CAATAGCATCATTATTCAGTGTATCGTATTTATGGTATGCAACAATTGGA
TTATTTTCATCCATCATTGTTGGATGTATCGTATCATTGCTAACTGGGTG
CAGTATCTGGTTGCCTGTTCGGCCTCATCTTCACCGGTTTCATATGTGTA
GGAGCCATTGTTTACCCACCCAACAAGGACGTCCTTCAAACGTCTATAAG
AGGTTGTTCATCATTCAATACAACTGTTGCAAATACTACTGATGGTGTCT
TTGTGAACCCTTTCAAGCCACACGAATGACAGTGAGTATACAGGGTATTG
TTGCAGCACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCCTTGG
GCTAATACTAAGCATGTCTTTATGGACTGGTAGTATTGGGAGGTAGTTTT
ATCGTCGCAAACGCTGGCAGTATGGTCACTCAGCACTGCATCTTCAGGCC
TGAACTCTTTAGCTGCAATCACGTTCGAAGATATTGTCAAGTTTCGGCTA
CCGGCTGAATATCAAGATAAATCAGTCAAATACACCAAGTACATAGATCT
TAGCCTATTTTCTTGTCAGTAATTTATCACATTTGAAAGGAGTTCCTGGA
ATTTTCATGGCAAGTCTGTTCAGTGGAGCTCTAAGAGTACAACGTGTATC
TTGGCTGGTCTTGTTATGTATGCTGTTTATCATGATTGTGATCCCAGACA
CGATAAGAAGATAAATAGTAATGACCAGGCAAAGAGAAGAATAAAATTAG
CAAGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTCTGTTTCA
CTGGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAATACACATG
GAAAATGTCGAAAAATCATAAGGACCCAATAGCATCATTATTCAGTGTAT
CGTATTTATGGTATGCAACAATTGGATTATTTTCATCCATCATTGTTGGA
TGTATCGTATCATTGCTAACTGGGTGCAGTATCTGGTTGCCTGTTCGGCC
TCATCTTCACCGGTTTCATATGTGTAGGAGCCATTGTTTACCCACCCAAC
AAGGACGTCCTTCAAACGTCTATAAGAGGTTGTTCATCATTCAATACAAC
TGTTGCAAATACTACTGATGGTGTCTTTGTGAACCCTTTCAAGCCACACG
AATGACAGTGAGTATACAGGGTATTGTTGCAGCACCTTATTTCGGAATGT
TCGTGATGGGAATATTTTTCCCTTGGGCTAATACTAAGCATGTCTTTATG
GACTGGTAGTATTGGGAGGTAGTTTTATCGTCGCAAACGCTGGCAGTATG
GTCACTCAGCACTGCATCTTCAGGCCTGAACTCTTTAGCTGCAATCACGT
TCGAAGATATTGTCAAGTTTCGGCTACCGGCTGAATATCAAGATAAATCA
GTCAAATACACCAAGTACATAGATCTTAGCCTATTTTCTTGTCAGTAATT
TATCACATTTGAAAGGAGTTCCTGGAATTTTCATGGCAAGTCTGTTCAGT
GGAGCTCTAAGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTATGCT
GTTTATCATGATTGTGATCCCAGACACGATAAGAAGATAAATAGTAATGA
CCAGGCAAAGAGAAGAATAAAATTAGCAAGGAACTTTTATTTGATTACAC
GCCGTTGAAAAGATGTTTCTGTTTCACTGGATCATCAAGAACAGTTGATA
TAAACACAAGAAGTGAAATACACATGGAAAATGTCGAAAAATCATAAGGA
CCCAATAGCATCATTATTCAGTGTATCGTATTTATGGTATGCAACAATTG
GATTATTTTCATCCATCATTGTTGGATGTATCGTATCATTGCTAACTGGG
TGCAGTATCTGGTTGCCTGTTCGGCCTCATCTTCACCGGTTTCATATGTG
TAGGAGCCATTGTTTACCCACCCAACAAGGACGTCCTTCAAACGTCTATA
AGAGGTTGTTCATCATTCAATACAACTGTTGCAAATACTACTGATGGTGT
CTTTGTGAACCCTTTCAAGCCACACGAATGACAGTGAGTATACAGGGTAT
TGTTGCAGCACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCCTT
GGGCTAATACTAAGCATGTCTTTATGGACTGGTAGTATTGGGAGGTAGTT
TTATCGTCGCAAACGCTGGCAGTATGGTCACTCAGCACTGCATCTTCAGG
CCTGAACTCTTTAGCTGCAATCACGTTCGAAGATATTGTCAAGTTTCGGC
TACCGGCTGAATATCAAGATAAATCAGTCAAATACACCAAGTACATAGAT
CTTAGCCTATTTTCTTGTCAGTAATTTATCACATTTGAAAGGAGTTCCTG
GAATTTTCATGGCAAGTCTGTTCAGTGGAGCTCTAAGAGTACAACGTGTA
TCTTGGCTGGTCTTGTTATGTATGCTGTTTATCATGATTGTGATCCCAGA
CACGATAAGAAGATAAATAGTAATGACCAGGCAAAGAGAAGAATAAAATT
AGCAAGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTCTGTTT
CACTGGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAATACACA
TGGAAAATGTCGAAAAATCATAAGGACCCAATAGCATCATTATTCAGTGT
ATCGTATTTATGGTATGCAACAATTGGATTATTTTCATCCATCATTGTTG
GATGTATCGTATCATTGCTAACTGGGTGCAGTATCTGGTTGCCTGTTCGG
CCTCATCTTCACCGGTTTCATATGTGTAGGAGCCATTGTTTACCCACCCA
ACAAGGACGTCCTTCAAACGTCTATAAGAGGTTGTTCATCATTCAATACA
ACTGTTGCAAATACTACTGATGGTGTCTTTGTGAACCCTTTCAAGCCACA
CGAATGACAGTGAGTATACAGGGTATTGTTGCAGCACCTTATTTCGGAAT
GTTCGTGATGGGAATATTTTTCCCTTGGGCTAATACTAAGCATGTCTTTA
TGGACTGGTAGTATTGGGAGGTAGTTTTATCGTCGCAAACGCTGGCAGTA
TGGTCACTCAGCACTGCATCTTCAGGCCTGAACTCTTTAGCTGCAATCAC
GTTCGAAGATATTGTCAAGTTTCGGCTACCGGCTGAATATCAAGATAAAT
CAGTCAAATACACCAAGTACATAGATCTTAGCCTATTTTCTTGTCAGTAA
TTTATCACATTTGAAAGGAGTTCCTGGAATTTTCATGGCAAGTCTGTTCA
GTGGAGCTCTAAGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTATG
CTGTTTATCATGATTGTGATCCCAGACACGATAAGAAGATAAATAGTAAT
GACCAGGCAAAGAGAAGAATAAAATTAGCAAGGAACTTTTATTTGATTAC
ACGCCGTTGAAAAGATGTTTCTGTTTCACTGGATCATCAAGAACAGTTGA
TATAAACACAAGAAGTGAAATACACATGGAAAATGTCGAAAAATCATAAG
GACCCAATAGCATCATTATTCAGTGTATCGTATTTATGGTATGCAACAAT
TGGATTATTTTCATCCATCATTGTTGGATGTATCGTATCATTGCTAACTG
GGTGCAGTATCTGGTTGCCTGTTCGGCCTCATCTTCACCGGTTTCATATG
TGTAGGAGCCATTGTTTACCCACCCAACAAGGACGTCCTTCAAACGTCTA
TAAGAGGTTGTTCATCATTCAATACAACTGTTGCAAATACTACTGATGGT
GTCTTTGTGAACCCTTTCAAGCCACACGAATGACAGTGAGTATACAGGGT
ATTGTTGCAGCACCTTATTTCGGAATGTTCGTGATGGGAATATTTTTCCC
TTGGGCTAATACTAAGCATGTCTTTATGGACTGGTAGTATTGGGAGGTAG
TTTTATCGTCGCAAACGCTGGCAGTATGGTCACTCAGCACTGCATCTTCA
GGCCTGAACTCTTTAGCTGCAATCACGTTCGAAGATATTGTCAAGTTTCG
GCTACCGGCTGAATATCAAGATAAATCAGTCAAATACACCAAGTACATAG
ATCTTAGCCTATTTTCTTGTCAGTAATTTATCACATTTGAAAGGAGTTCC
TGGAATTTTCATGGCAAGTCTGTTCAGTGGAGCTCTAAGAGTACAACGTG
TATCTTGGCTGGTCTTGTTATGTATGCTGTTTATCATGATTGTGATCCCA
GACACGATAAGAAGATAAATAGTAATGACCAGGCAAAGAGAAGAATAAAA
TTAGCAAGGAACTTTTATTTGATTACACGCCGTTGAAAAGATGTTTCTGT
TTCACTGGATCATCAAGAACAGTTGATATAAACACAAGAAGTGAAATACA
CATGGAAAATGTCGAAAAATCATAAGGACCCAATAGCATCATTATTCAGT
GTATCGTATTTATGGTATGCAACAATTGGATTATTTTCATCCATCATTGT
TGGATGTATCGTATCATTGCTAACTGGGTGCAGTATCTGGTTGCCTGTTC
GGCCTCATCTTCACCGGTTTCATATGTGTAGGAGCCATTGTTTACCCACC
CAACAAGGACGTCCTTCAAACGTCTATAAGAGGTTGTTCATCATTCAATA
CAACTGTTGCAAATACTACTGATGGTGTCTTTGTGAACCCTTTCAAGCCA
CACGAATGACAGTGAGTATACAGGGTATTGTTGCAGCACCTTATTTCGGA
ATGTTCGTGATGGGAATATTTTTCCCTTGGGCTAATACTAAGCATGTCTT
TATGGACTGGTAGTATTGGGAGGTAGTTTTATCGTCGCAAACGCTGGCAG
TATGGTCACTCAGCACTGCATCTTCAGGCCTGAACTCTTTAGCTGCAATC
ACGTTCGAAGATATTGTCAAGTTTCGGCTACCGGCTGAATATCAAGATAA
ATCAGTCAAATACACCAAGTACATAGATCTTAGCCTATTTTCTTGTCAGT
AATTTATCACATTTGAAAGGAGTTCCTGGAATTTTCATGGCAAGTCTGTT
CAGTGGAGCTCTAAGAGTACAACGTGTATCTTGGCTGGTCTTGTTATGTA
TGCTGTTTATCATGATTGTGATCCCAGACACGATAAGAAGATAAATAGTA
ATGACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036066XLOC_036066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057253-exon-scaffold_286-1575043694:444813..444907TCONS_00057253-exon-scaffold_286-1575043694:444813..444907Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:444106..444194TCONS_00057253-exon-scaffold_286-1575043694:444106..444194Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:443388..443500TCONS_00057253-exon-scaffold_286-1575043694:443388..443500Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:442873..442943TCONS_00057253-exon-scaffold_286-1575043694:442873..442943Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:442242..442328TCONS_00057253-exon-scaffold_286-1575043694:442242..442328Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:441247..441425TCONS_00057253-exon-scaffold_286-1575043694:441247..441425Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:440521..440621TCONS_00057253-exon-scaffold_286-1575043694:440521..440621Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1575043694:438648..439529TCONS_00057253-exon-scaffold_286-1575043694:438648..439529Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:444813..444907TCONS_00057253-exon-scaffold_286-1510915933:444813..444907Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:444106..444194TCONS_00057253-exon-scaffold_286-1510915933:444106..444194Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:443388..443500TCONS_00057253-exon-scaffold_286-1510915933:443388..443500Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:442873..442943TCONS_00057253-exon-scaffold_286-1510915933:442873..442943Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:442242..442328TCONS_00057253-exon-scaffold_286-1510915933:442242..442328Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:441247..441425TCONS_00057253-exon-scaffold_286-1510915933:441247..441425Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:440521..440621TCONS_00057253-exon-scaffold_286-1510915933:440521..440621Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1510915933:438648..439529TCONS_00057253-exon-scaffold_286-1510915933:438648..439529Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:444813..444907TCONS_00057253-exon-scaffold_286-1491911889:444813..444907Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:444106..444194TCONS_00057253-exon-scaffold_286-1491911889:444106..444194Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:443388..443500TCONS_00057253-exon-scaffold_286-1491911889:443388..443500Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:442873..442943TCONS_00057253-exon-scaffold_286-1491911889:442873..442943Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:442242..442328TCONS_00057253-exon-scaffold_286-1491911889:442242..442328Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:441247..441425TCONS_00057253-exon-scaffold_286-1491911889:441247..441425Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:440521..440621TCONS_00057253-exon-scaffold_286-1491911889:440521..440621Clytia hemisphaericaexon
TCONS_00057253-exon-scaffold_286-1491911889:438648..439529TCONS_00057253-exon-scaffold_286-1491911889:438648..439529Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057253-proteinTCONS_00057253-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:438648..444907 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100853	0.122856	0.0570593	0	0.10194	0.0268514	0	0.0606557	0.0424665	0.105203	0	0.100687	10.591	8.87566	2.57541	9.08986	0.283732	0.736735	17.705	11.8282	1.75407	1.96069	2.66047	2.70538	7.76426	10.7442	0	0.0368732	0.083901	0.0854818
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001734Na/solute_symporter
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00057253 vs. Swiss-Prot (Human)
Match: SC5A8 (Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.738e-40
Identity = 89/266 (33.46%), Postives = 159/266 (59.77%), Query Frame = 3 
Query:    6 TTCILAGLVMYAVYHDCDPRHDKKINSNDQILAYFLVSNLSHLKGVPGIFMASLFSGALSTASSGLNSLAAITFEDIVK--FRLPAEYQDKSVKY-TKYIACLYGLVVLGGSFIVANAGSMVTQMTVSIQGIVAAPYFGMFVMGIFFPWANTKGAVSGCLFGLIFTGFICVGAIVYPPNKDV---LQTSIRGC-SSFN-TTVANTTDGVFVNP----FKPHEDPIA-SLFSVSYLWYATIGLFSSIIVGCIVSLLTGKEKNKISKE 764
            T  +  GL +Y+ YHDCDP   KK+++ DQ++ Y ++  L    G+PG+F+A  +SG LST SS +N+LAA+T ED++K  FR      ++S+ + ++ ++ +YG + +G + + +  G+++ Q  +S+ G+V  P  G+F +GI  P+AN+ GA+ G + G   + ++ +GA +YPP  +    L   I+GC S++N T +  TT+  F       +     P+  + +S+SYL+++T+G   +++VG +VSL TG  K  +   
Sbjct:  292 TCSVFCGLALYSRYHDCDPWTAKKVSAPDQLMPYLVLDILQDYPGLPGLFVACAYSGTLSTVSSSINALAAVTVEDLIKPYFR---SLSERSLSWISQGMSVVYGALCIGMAALASLMGALL-QAALSVFGMVGGPLMGLFALGILVPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGCNSTYNETNLMTTTEMPFTTSVFQIYNVQRTPLMDNWYSLSYLYFSTVGTLVTLLVGILVSLSTGGRKQNLDPR 553
The following BLAST results are available for this feature:
BLAST of TCONS_00057253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A85.738e-4033.46Sodium-coupled monocarboxylate transporter 1 OS=Ho... [more]
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