TCONS_00057197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057197
Unique NameTCONS_00057197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057197 ID=TCONS_00057197|Name=TCONS_00057197|organism=Clytia hemisphaerica|type=transcript|length=912bp
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA
CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC
TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA
AAGATTGTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTC
GACGGGCAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATA
CATGTGGAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTG
ATTCTGATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTT
GCTGAATCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAG
TAAAGTGTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATA
GCATGCATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCG
TATTCAGATACGTTTCGAAGCAGAGCGTGGACACAGTTTTCAAGGAGACA
TTGCATTGGATGATATTTTTATTGTTAACTCGCTATGTTCCAAGAAAAAA
ACACTTGTTCCGATACTGAGCACCACCCCAACGACCACCActactacaac
aacgaccaccactACTACAGCAACGACCACCCCAACTACAGCAACGACCA
CcccaactacaacaacgaccactccaactacaacaacgaccactccaacG
ACTACAACGACCACCCCAACAACTACCACGTCCACCCCAACCACTACTAC
CGGTATGTCTGATACTCTTTAGAAGGCTAATACTTAAGAAATGAAATCTA
ATCTAATCTAAAAGGGAAGGCTAATCGCCAGAAGTGGATGAAATTTCGCT
ATAATGTTGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_286:646645..651338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057197 ID=TCONS_00057197|Name=TCONS_00057197|organism=Clytia hemisphaerica|type=transcript|length=4694bp|location=Sequence derived from alignment at scaffold_286:646645..651338+ (Clytia hemisphaerica)
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA AAGATTGTTACATTAAACCATGCGCATTGGGTATGATATATTCGATGATA CTGTCAGGTTTTTTTATGATATCGTAGATTTTTTGTGcattagctctagt ttagacggtcgactttctgccctgtATATTCAATCGTTGAAGTGTGCTAA AGATACGctgcgacttgacagacgcAAGCTTCCAAGCCCTGGCGTATAAC ATGACACCtgaacgacactgggagagcgatgTTCACGTGAGGCCAAACCT AATGAGTGCCATGGCACGTCATTATGCCAGCCACACTCTTGGGCAAAAAG CGGGCAAAAAGTTGGCAgttatttgcttgaaaaagattgaaagaagacat tgcacattgacgtcaaaagatggAAATGCATGTACTTTAAACAGCCAATA TTCTGCCCGCTTtcattcacaattagaatagggaGGACGAAAAGTGGGCC GTTTATACTGGAACTTAGAACTTCAACCAGCTTAAAAGTCAAGCACAGTG GAAAAGTCACTTTAACGACGAGAGTTTCCTCTAGAAAAACAACCTTTTTA AAAGGATATTAGAACCATCCCCAAGATTTGTTCAAATATGTCTAACACCA TTTCAAAAACCATGTGATAAAACCATATGATACGGTGGAGTCTCTTGAAC Tagaatctctataactcgaacaagttttatggtctcttcagttaacaatg ggcttttccagaaaaaaattgaatatggggggggggtggaggataacAAT TTTCAGTAATTTACCCCCcagacaaagtgacttttgaccccccggacaac gggttttaccccctggacaagcatcagttgacccccggacaacccaaaat tacccctggacagagcaaatttaccccccggacaatatatcctccacccc catgtacggacattttctggaagagcccaatgccTTTTAAAAACGTTACT CCATAATTCGAAATTcctttaattcgaacaaatttgcgttccccTGTCCG TGTTATTgagattttgataaattttggaGGTCATCTTCGCTATAACTCGT AACTGGCCACTTAGCTTGTTGGATTCATTCATTTATTAACGAAGATGTCG acaatatttgaaatttttagaacCGGATGATTGTTTATTCGACGGGCAAG GAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTGGAAA AGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTGATCA TACAACACAGAACACTACTAAAAACGGTAAGAAGATTATATTTCAACTga tatattcacttttttttgaacGATACTTCGATGATTGCATGAGAACGTGA GATTCCTGAGATGTGACGAAAACTTGAAAACTGATTCAGAACAATCTTAA CCTTTTGTTTTGGAAACATTTCAATGTAGATAAGATCTTTTAGCCCCTAT ATCATCTCATGCTCAAGGGTTTCAAGAATATAATTATTCAAATCTGTaaa tttcggaaaaaaatgAGAACCGCTGAGctccagtcaaaatttactGTTTA ATatatagttgacgctctctaattcgacgttctactattcgataggctcc cttattcgatgagaatccaattccccttgaagatcgaattagagagtgcc AACTGTGTGTTCCAAATGATTCTTTCAGGTCACTACATGCTTGCTGAATC ATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGTGT TCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGCAT GGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCAGG TACTGTTGAAATTTAGCTACACTGAAACGCCAGTCGGGCTAGACCgatat cacgcgggaaaagtgaacGTAGGAGTTAGGTgtgcgtaggaagaaatttt gtcggcggggCAGATTCTAGCCACATACTAAATTTGTAGGTCTTCGGCCA CTGGAAAACCGTAAGTTAAAGTTTTGAAGGTCTTCGGCCGCTAGCGTAGG TCTTCGTCCGTTGACGGAAAAAAATCTGCGTCGGCGGGAAGGAGTGAAAG TTAATTAGCACCCTCTCACCAACTTccgctcgttctcctacgcagcttcT ATTTCAACAATCACCCAGCCGCACGCGCTCGTGTTTTTGCTCTCTGAATG aataattaacagactagtttacTATTTTGGCCATAACTCACGGATGGGGT TAGTACTCTTGATGACAGATGAGGATAACCCCTAGATTTGAAATAAATAA GCTCAGCCAGATATCAAtttatattttcgaaaaaattagaCCCTACTAGA AAAAAAGAACCTGAAAGATAATATTGGTATGTGATAAATTTAGTagattt tgattaaattttgcgacAAACTCAGACACTGAAAAGAGGGATCCTAACAA AAGGGGCATATCCCATACCCATCTTCGCCTTAGTGAATCCACAACTCGGC CAAATCCTCAGAACTAAATTATTATTAATGGGAttttccagaaagaaatt gaatatgggggtggaggatataacccTTATTGGAGATTTACCCACGGata ttgtgacttttgacccccggacagcaggtctagccccctggacaagcatc agttgaccccatgAACATTCAAAAGTTTCCCTCAAATTGAGCAAAATTag ccccaaacagagcaagtttaccccccccccNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNccccaaacagagcaagtttccccccccccc ggacaaggcaaattttgtagatttttcactacccccgggcACTATATccc tatatcctccaccccccccatgtaccgacattttctggaagaacccAATA ACATATTTTAAAATTAAGAAATGGGATTCTTCAATGGTCTATCATATTGG AGTCttgacatcaattttttaaacatcCATTCGTTTtaggaaaagaaaat aaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATGGAAAGTAGCTGA AGTAGACATCCCTGAAAAACCTGATAATTACAATGAAAGGAATTCTTATA TCTTTCTTGACTACAAGGTATATTCTTTTAAGGTCTTTATCTAATTTTAT GTCCTTTATGTCctattttcgcgatttttttaattttgattgcGTACAAA AGTCGCTGAGCACAAAGCAGACAGAGATTAAGTACACAAACATTTTTGCG TTCTTGGTAAGACCCGACCAATTGAACCGCCGACCTTTTAAATcatatgt tgaacggtgaaaaagaatgctgCTATTATAtacatgtttcggactcggtc cgCTCTCAAGGGAATGAAGATAGATATCCTATAGATTACAGTCACTATAA TTACCTTCCATTAGTTCCATTTATACTTAgacggaaaaatcgtctgagac gAGAAGTTTAtaaaatgtgatctgtggaggatatcctatttattgaaaca agtacactcctccataatgctcattttctaaattactcgtctcagacaaa ttaatcgtTTCAGTATAAATAGAACCATTCTCTTTAAAGATACGTTTCGA AGCAGAGCGTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTT TTATTGTTAACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTG AGCACCACCCCAACGACCACCActactacaacaacgaccaccactACTAC AGCAACGACCACCCCAACTACAGCAACGACCACcccaactacaacaacga ccactccaactacaacaacgaccactccaacGACTACAACGACCACCCCA ACAACTACCACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCT TTAGAAGGCTAATACTTAAGAAATGAAATCTAATCTAATCTAAAAGGGAA GGCTAATCGCCAGAAGTGGATGAAATTTCGCTATAATGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036043XLOC_036043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057197-exon-scaffold_286-1491911889:646645..646824TCONS_00057197-exon-scaffold_286-1491911889:646645..646824Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1510915933:646645..646824TCONS_00057197-exon-scaffold_286-1510915933:646645..646824Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1575043694:646645..646824TCONS_00057197-exon-scaffold_286-1575043694:646645..646824Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1491911889:647915..648070TCONS_00057197-exon-scaffold_286-1491911889:647915..648070Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1510915933:647915..648070TCONS_00057197-exon-scaffold_286-1510915933:647915..648070Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1575043694:647915..648070TCONS_00057197-exon-scaffold_286-1575043694:647915..648070Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1491911889:648473..648643TCONS_00057197-exon-scaffold_286-1491911889:648473..648643Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1510915933:648473..648643TCONS_00057197-exon-scaffold_286-1510915933:648473..648643Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1575043694:648473..648643TCONS_00057197-exon-scaffold_286-1575043694:648473..648643Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1491911889:650934..651338TCONS_00057197-exon-scaffold_286-1491911889:650934..651338Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1510915933:650934..651338TCONS_00057197-exon-scaffold_286-1510915933:650934..651338Clytia hemisphaericaexon
TCONS_00057197-exon-scaffold_286-1575043694:650934..651338TCONS_00057197-exon-scaffold_286-1575043694:650934..651338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:646645..651338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.41401 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.737456 1.41401 0.436803 0 0 0 0 0 0.671626 0.858311 0 0.134439 0.114202 0 0.330799 0 0 0.873672 0 0.632055 0 0 0.789724 0 0 0 0.221554 0 0.654571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
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