TCONS_00057309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057309
Unique NameTCONS_00057309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=transcript|length=1945bp
GTGGTATCAAGATTAATTTgatcaatttatttttcattgctaATGGGCCT
AAGTCATCATCATAAAATCatacaaaaagtgtcaaaaaatgtCTATGAAA
AGTATCTTTAAAATGTTTCCAAAAGTTTTGTGTCAACAATGACTTTGAAT
TCGGGTACCTTTCAAAGAAGGAGCAGAATTTTCTCTCCGTCTTggttcag
tcattttctttattCCCACAAAAGAAGCCCAACTATTAGCACGTGCTAAC
CCTATAGATTCCAATGAAATACGACTAGCAATTTTTGATCCTCGTCGTAT
TCCTTTATACCTTTTTCTATAAGGTGAATCAGCACTTGAAAAACTCGGTA
AAGAGTGTTTCCTTGCTTGAAACAACTCGGTTATGTCACGTTTGGATGAT
GTCTTTGATGACGAAGGTCGAGTTGGTAACTCGGGATATTCTGATTCGTC
ATTTTCACAAGGTTGTTTTTTACTATTCAGTTCCACAACCTCGGTATATT
CAGTCGGTGTCTTCTGACCGTCTTCACCCAAATAAAGCTCTACTTCCCTA
TCCTCGAAATCAAGTGCTTCCATACTCTTTGCTAGACTAGCCACCCCGTT
TATCGATCTCTCTAAAGGTTCTAAATCAGTACGTTCGACACTTAAGACAT
CTTCGCATGACATACTTTTGAAGCGATCATTCAAAGTCATTTTACTTGCA
GTAGAACTATTCAAATCAATCGACTTTGGTACAactattatctttttaac
gccATCAATCGAATCAATATCATCCACATCTTCAATATTAATCGATAATT
TAGTCGACATTTCCGATAATTGTACATCACTCATGCTATCcctcacaaat
cgattttcaaCCACACTATCCTTCACATTAACATCTTTCTTGACAGCGTC
AGTCTTATTCGTATCCGTCTTGACATGTTTACTGCCGCCGTATAAACGCC
GTGATATCCATGACGATGATTTTGATTTATGTAGACTTTGTAAACGCTCA
TTAAATGAACGGCTACGTTGCGGTAAAAGATCTTTAGTTGATAATGTCTt
cattgatttttgattattgttATTGGAACGCTTTTCAACCCTAGGTGTCG
AATTATCGAGTAACCCACTATCTATTGATTTACTTCGCGTTAAATTCCCT
TTTTTATGGTTAGTAATACTACCGTTTGCAGATCGATTTAAAGTTCCTCC
GTTCGCTGATCGATTCAGTGATTGTGTTTGGTTTCTAGTCCTACTTATTT
TACCGTTAGCCTGCGCTCCATTTTTAGCCAGGTCAGTCGGCTTCCGCGGT
TTTATATTACGCTGAACAGTCGGGATCATTTTTGGGACTGGGCCTGGTGG
CTTACCAGACGCACAAAGACGTATGGCGTATAACCACCTGTACCTATGAA
GTTTAGTCTCACATTTGAACTGGTATTTTGCTTTCCCTGTTTCAATCCAA
AACGGAAAACgataacatttttttttatggTCATCAAATCCGCAAAATGT
TTTGTTTGATATTTCGATCATGGTCACATTATGTGGAATAATTTGTCCAG
TCTTGCTGTCCTTTCTGTTAAATACCAAATGTTTATCAACTAAAACTGCA
TAATATTCGATCCACGTTTTTCCTTCTTTCTTTAGGATAACTTCTTTAtg
gtatatttttgttttgtcatATTGTATGCCTGGCAATTCCgccattttgt
caatattttccaaTAAATCTCAAAGTCAAAAAACCATTACCTGAAGGAGA
TTACTAATAAATTTCAATTAACCTCCTTGATGCATAGAGTAAGATGCCAC
TGTTTTGTAGGATAATTATGacatgtcaattttttttacccttTGAAAAA
GATACTAACAACTCCTTGGTTTTTTCTTTCAACTTCTAAAATAATCacga
aaaataatttgaaagaattcGTCCAACCATAACATAACTCACTTC
Run BLAST on NCBI

protein sequence of TCONS_00057309-protein

>TCONS_00057309-protein ID=TCONS_00057309-protein|Name=TCONS_00057309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MAELPGIQYDKTKIYHKEVILKKEGKTWIEYYAVLVDKHLVFNRKDSKTG
QIIPHNVTMIEISNKTFCGFDDHKKKCYRFPFWIETGKAKYQFKCETKLH
RYRWLYAIRLCASGKPPGPVPKMIPTVQRNIKPRKPTDLAKNGAQANGKI
SRTRNQTQSLNRSANGGTLNRSANGSITNHKKGNLTRSKSIDSGLLDNST
PRVEKRSNNNNQKSMKTLSTKDLLPQRSRSFNERLQSLHKSKSSSWISRR
LYGGSKHVKTDTNKTDAVKKDVNVKDSVVENRFVRDSMSDVQLSEMSTKL
SINIEDVDDIDSIDGVKKIIVVPKSIDLNSSTASKMTLNDRFKSMSCEDV
LSVERTDLEPLERSINGVASLAKSMEALDFEDREVELYLGEDGQKTPTEY
TEVVELNSKKQPCENDESEYPELPTRPSSSKTSSKRDITELFQARKHSLP
SFSSADSPYRKRYKGIRRGSKIASRISLESIGLARANSWASFVGIKKMTE
PRRRENSAPSLKGTRIQSHC
Run BLAST on NCBI

transcript from alignment at scaffold_286:897683..899627

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at scaffold_286:897683..899627 (Clytia hemisphaerica)
GAAGTGAGTTATGTTATGGTTGGACgaattctttcaaattatttttcgtG ATTATTTTAGAAGTTGAAAGAAAAAACCAAGGAGTTGTTAGTATCTTTTT CAaagggtaaaaaaaattgacatgtCATAATTATCCTACAAAACAGTGGC ATCTTACTCTATGCATCAAGGAGGTTAATTGAAATTTATTAGTAATCTCC TTCAGGTAATGGTTTTTTGACTTTGAGATTTAttggaaaatattgacaaa atggcGGAATTGCCAGGCATACAATatgacaaaacaaaaatataccaTAA AGAAGTTATCCTAAAGAAAGAAGGAAAAACGTGGATCGAATATTATGCAG TTTTAGTTGATAAACATTTGGTATTTAACAGAAAGGACAGCAAGACTGGA CAAATTATTCCACATAATGTGACCATGATCGAAATATCAAACAAAACATT TTGCGGATTTGATGAccataaaaaaaaatgttatcGTTTTCCGTTTTGGA TTGAAACAGGGAAAGCAAAATACCAGTTCAAATGTGAGACTAAACTTCAT AGGTACAGGTGGTTATACGCCATACGTCTTTGTGCGTCTGGTAAGCCACC AGGCCCAGTCCCAAAAATGATCCCGACTGTTCAGCGTAATATAAAACCGC GGAAGCCGACTGACCTGGCTAAAAATGGAGCGCAGGCTAACGGTAAAATA AGTAGGACTAGAAACCAAACACAATCACTGAATCGATCAGCGAACGGAGG AACTTTAAATCGATCTGCAAACGGTAGTATTACTAACCATAAAAAAGGGA ATTTAACGCGAAGTAAATCAATAGATAGTGGGTTACTCGATAATTCGACA CCTAGGGTTGAAAAGCGTTCCAATaacaataatcaaaaatcaatgaAGAC ATTATCAACTAAAGATCTTTTACCGCAACGTAGCCGTTCATTTAATGAGC GTTTACAAAGTCTACATAAATCAAAATCATCGTCATGGATATCACGGCGT TTATACGGCGGCAGTAAACATGTCAAGACGGATACGAATAAGACTGACGC TGTCAAGAAAGATGTTAATGTGAAGGATAGTGTGGttgaaaatcgatttg tgaggGATAGCATGAGTGATGTACAATTATCGGAAATGTCGACTAAATTA TCGATTAATATTGAAGATGTGGATGATATTGATTCGATTGATggcgttaa aaagataatagtTGTACCAAAGTCGATTGATTTGAATAGTTCTACTGCAA GTAAAATGACTTTGAATGATCGCTTCAAAAGTATGTCATGCGAAGATGTC TTAAGTGTCGAACGTACTGATTTAGAACCTTTAGAGAGATCGATAAACGG GGTGGCTAGTCTAGCAAAGAGTATGGAAGCACTTGATTTCGAGGATAGGG AAGTAGAGCTTTATTTGGGTGAAGACGGTCAGAAGACACCGACTGAATAT ACCGAGGTTGTGGAACTGAATAGTAAAAAACAACCTTGTGAAAATGACGA ATCAGAATATCCCGAGTTACCAACTCGACCTTCGTCATCAAAGACATCAT CCAAACGTGACATAACCGAGTTGTTTCAAGCAAGGAAACACTCTTTACCG AGTTTTTCAAGTGCTGATTCACCTTATAGAAAAAGGTATAAAGGAATACG ACGAGGATCAAAAATTGCTAGTCGTATTTCATTGGAATCTATAGGGTTAG CACGTGCTAATAGTTGGGCTTCTTTTGTGGGaataaagaaaatgactgaa ccAAGACGGAGAGAAAATTCTGCTCCTTCTTTGAAAGGTACCCGAATTCA AAGTCATTGTTGACACAAAACTTTTGGAAACATTTTAAAGATACTTTTCA TAGacattttttgacactttttgtatGATTTTATGATGATGACTTAGGCC CATtagcaatgaaaaataaattgatcAAATTAATCTTGATACCAC

Coding sequence (CDS) from alignment at scaffold_286:897683..899627

>TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_286:897683..899627 (Clytia hemisphaerica)
atggcGGAATTGCCAGGCATACAATatgacaaaacaaaaatataccaTAA
AGAAGTTATCCTAAAGAAAGAAGGAAAAACGTGGATCGAATATTATGCAG
TTTTAGTTGATAAACATTTGGTATTTAACAGAAAGGACAGCAAGACTGGA
CAAATTATTCCACATAATGTGACCATGATCGAAATATCAAACAAAACATT
TTGCGGATTTGATGAccataaaaaaaaatgttatcGTTTTCCGTTTTGGA
TTGAAACAGGGAAAGCAAAATACCAGTTCAAATGTGAGACTAAACTTCAT
AGGTACAGGTGGTTATACGCCATACGTCTTTGTGCGTCTGGTAAGCCACC
AGGCCCAGTCCCAAAAATGATCCCGACTGTTCAGCGTAATATAAAACCGC
GGAAGCCGACTGACCTGGCTAAAAATGGAGCGCAGGCTAACGGTAAAATA
AGTAGGACTAGAAACCAAACACAATCACTGAATCGATCAGCGAACGGAGG
AACTTTAAATCGATCTGCAAACGGTAGTATTACTAACCATAAAAAAGGGA
ATTTAACGCGAAGTAAATCAATAGATAGTGGGTTACTCGATAATTCGACA
CCTAGGGTTGAAAAGCGTTCCAATaacaataatcaaaaatcaatgaAGAC
ATTATCAACTAAAGATCTTTTACCGCAACGTAGCCGTTCATTTAATGAGC
GTTTACAAAGTCTACATAAATCAAAATCATCGTCATGGATATCACGGCGT
TTATACGGCGGCAGTAAACATGTCAAGACGGATACGAATAAGACTGACGC
TGTCAAGAAAGATGTTAATGTGAAGGATAGTGTGGttgaaaatcgatttg
tgaggGATAGCATGAGTGATGTACAATTATCGGAAATGTCGACTAAATTA
TCGATTAATATTGAAGATGTGGATGATATTGATTCGATTGATggcgttaa
aaagataatagtTGTACCAAAGTCGATTGATTTGAATAGTTCTACTGCAA
GTAAAATGACTTTGAATGATCGCTTCAAAAGTATGTCATGCGAAGATGTC
TTAAGTGTCGAACGTACTGATTTAGAACCTTTAGAGAGATCGATAAACGG
GGTGGCTAGTCTAGCAAAGAGTATGGAAGCACTTGATTTCGAGGATAGGG
AAGTAGAGCTTTATTTGGGTGAAGACGGTCAGAAGACACCGACTGAATAT
ACCGAGGTTGTGGAACTGAATAGTAAAAAACAACCTTGTGAAAATGACGA
ATCAGAATATCCCGAGTTACCAACTCGACCTTCGTCATCAAAGACATCAT
CCAAACGTGACATAACCGAGTTGTTTCAAGCAAGGAAACACTCTTTACCG
AGTTTTTCAAGTGCTGATTCACCTTATAGAAAAAGGTATAAAGGAATACG
ACGAGGATCAAAAATTGCTAGTCGTATTTCATTGGAATCTATAGGGTTAG
CACGTGCTAATAGTTGGGCTTCTTTTGTGGGaataaagaaaatgactgaa
ccAAGACGGAGAGAAAATTCTGCTCCTTCTTTGAAAGGTACCCGAATTCA
AAGTCATTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036114XLOC_036114Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057309-proteinTCONS_00057309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057309-exon-scaffold_286-1491911889:897683..899627TCONS_00057309-exon-scaffold_286-1491911889:897683..899627Clytia hemisphaericaexon
TCONS_00057309-exon-scaffold_286-1510915933:897683..899627TCONS_00057309-exon-scaffold_286-1510915933:897683..899627Clytia hemisphaericaexon
TCONS_00057309-exon-scaffold_286-1575043694:897683..899627TCONS_00057309-exon-scaffold_286-1575043694:897683..899627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:897683..899627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (8.95047 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.092557 0.0226381 0 0.0871123 3.54703 4.10782 0.981622 1.9625 2.21542 2.831 3.96877 3.86753 0.545412 0.94646 0.828446 0.990652 8.95047 7.38824 2.09447 2.08177 0.937283 1.3421 0.899612 1.84075 0.168135 0.089719 0 0.0462206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR001849PH_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Sequence
Match NameE-valueIdentityDescription
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