TCONS_00057351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057351
Unique NameTCONS_00057351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057351 ID=TCONS_00057351|Name=TCONS_00057351|organism=Clytia hemisphaerica|type=transcript|length=993bp
gagtctttattttatttctatatttcGCGGCATTTCATTGGCGGGTTCTT
CAAACATGTGACTTCGCGTCGTTTCGAATGTAAACACAGAAAGAGTGACA
AGCTGACGCACAGGCTGACGAACATCTTTTTTCTTTGCATAGAGCAAGCA
AAAGTTAAAATCATTTTGAAGTGGTGGGAGGAGTAACCAAAGAAGTAGAA
TAATGTCTGATCATCAAGgtgGAAAGGCTTTTGGCCAActcaaaaaacaa
caagaattgAGTTTAGATGAAATTAACAAGACTTATTTAGAAGATGAAGA
TTATCAAGATGAAGAAGAATATCCAGATCTCCAAGGATCTTTGGTTACCT
ATAAAAaaCAATTTATGGAGTTTGATTTGGACAACTCTGGTGATATTGAC
TTGATGGAGTTGAAAATGATGATGGAGAAATTAGGCCAAGCCAAAACTCA
TTTAGAATTAAAGAAAATGATTGCTGAAGTCGATCGTGAGAATAGAGGTG
CAATTTCGTACAATGATTTCTTGTTCATGATGTTAGGAAAGAAAAGCTCT
GTCCTTAAGCTAATTTTGAAGTTCGAAAAAGCGATGGCTGGACCTGAAAA
GAAAACAGGTGTCGCTCCGAAACGAGACCTTTCATCACTCCCTTGAACGA
CCACGAAGCATTTTTTCATATTATCCATACAACTGCTCATTACAATCTGA
TGTTTGCTGTACTTTTATATCGAATACTCAACTTGTCACAAAGAATTCCA
TGCAACATTATAAACCAGTACCAGAAGTATAAAAGGGTCCCTTCGTAAGC
GTCGAACATGTGACATTAAATCAGCGCTTTTATCATTTATTTCACCATGC
AATTTTATTATTATGTATAATCAAAGCAATCTTATTATTATCGTgtaatt
gtaaatattttattaGGGTATTACGTTTCATTGTATTATTTTCCCCTAGA
ACAAACTTTCGACCAGACATTTTGATATTAAACCGAAGCTTGG
Run BLAST on NCBI

protein sequence of TCONS_00057351-protein

>TCONS_00057351-protein ID=TCONS_00057351-protein|Name=TCONS_00057351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MSDHQGGKAFGQLKKQQELSLDEINKTYLEDEDYQDEEEYPDLQGSLVTY
KKQFMEFDLDNSGDIDLMELKMMMEKLGQAKTHLELKKMIAEVDRENRGA
ISYNDFLFMMLGKKSSVLKLILKFEKAMAGPEKKTGVAPKRDLSSLP
Run BLAST on NCBI

transcript from alignment at scaffold_288:238015..245843-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057351 ID=TCONS_00057351|Name=TCONS_00057351|organism=Clytia hemisphaerica|type=transcript|length=7829bp|location=Sequence derived from alignment at scaffold_288:238015..245843- (Clytia hemisphaerica)
GAGTCTTTATTTTATTTCTATATTTCGCGGCATTTCATTGGCGGGTTCTT
CAAACATGTGACTTCGCGTCGTTTCGAATGTAAACACAGAAAGAGTGACA
AGCTGACGCACAGGCTGACGAACATCTTTTTTCTTTGCATAGAGCAAGCA
AAAGTTAAAATCATTTTGAAGTGGTGGGAGGAGTAACCAAAGAAGTAGAA
TAATGTCTGATCATCAAGGTATACTTCAATTTCTCGTTTTGCTTTTTTAA
ACTGCGATCCTAGCTGTTTTTATATGCCTATCCGTCGTTAAAATACAGTC
AGGTGCAGGTACCGTCCAAGAAATTGCCTCCTCGGGGTACCTAAGGCAGT
TAGGCACTCCCCAATGGTTACCATATGAGGTTTCACCCCTTTAACGTAAA
TGTTTTCTAGTTTTTTTTTTGAAGCATTTTGATTTAGAATATGAGATGGG
GCATGCAGTTTAAGGGAGCCTTCCAAACTCAGACTTGCCATGGAAAAGTC
AAATGGGCGTTTTGATTTCCAACAGGACCCTGCCGACGCACTGGACTGTC
CGGTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCA
ATAATTCTGGTGTCATTCCGGTGTTGCATATAGGGAATTTTGGACGCCGG
ACATTTATGAAACAAAAAATTAAGAAACACTGTGACGCACACCGGACTGG
CCATGTCAGGTGTTTTGATTGTCCGGTGGGAAAAATATCCTTCTCCGACA
CCGGACATCCGACTTCCTTAAATCCGGTGTAGAAATTGTCCGGTGGTAAA
AAAAATTCTCATTTTACACCGGACTTTCGCGTGTCCGGTGCTCGTTAGGT
CCGGTGCGTCGGCAGGGTCCTTTTCCAACCCCTCTAGAGTCAAGAGTGCG
AACGGCCCCAGTGCACAAACGAACGTCTTTGAACTTGAAAAAAACAACCA
AAAACAAACTTCTATAGAATTTCCTTTGTGCAGCAGAATCCTCAAACTGT
CCCTTGCAATCTCTCCAAAAATTAAAATAAATGGAGCACAAGAACAACAC
CAAACCAATTTTGAACGAGGCCAAGTAAAAAAAAATCACAAAATTCGGGA
TTTTTGTAAACATTGCTGATTGCAAGAGGAAATGTNCCAAGTAAAAAAAA
ATCACGAAATTCGGGATTTTTGTAAACATGGCTGCTTGCAAGAGGAAATG
TTTTTATGAGAAGATTTGCGCAAGAAGAGTTCTGAAAATGACTTTCCTCT
TTTAAAAACCTGTTATCTTCCATCACACAAGATTTCATTGAAACATGTTA
GCTCATTAATTCAAAATCAAAAGAAACATATCACCAGTAGTTGATATAAA
AAGGGTCCAGTCCATGAATGATCCAAACACCATATTCAAAATGAAGACAT
TGCAACGTCGAAACATTCCAAAGAAACAAAAGGAACAAAATGGCTGTTAA
CAGGAAGTCTAAATACATGTGGCTGATGTTTTGATGTGGTTTTTAGTTTT
GAAAGTCTTTAGAGCTTGTAAAAGAGTTTTTATGGAAAGTTAATTATGTG
TGTTTGCCTGGGTTTACAAAGTTCAGAAAGTCTGTCAANTAGAGCTTGTA
AAAGAGTTTTTATGGAAAGTTAATTATGTGTGTTTGCCTGGGTTTACAAA
GTTCAAAAAGTCTGTCATCAAGGGTTCACACACAGAGTGTTCATAACATT
CTGTGTCAGACTAATCTACCTGCACCAAGCTCTATAATCTTAAAACTTTG
TGAGGTAAGGTATTTTTTGTTTTTTCTAAGATTATGAGCTTGGATTCCCA
GGCTAAAGTATTACCTGCAAGTGGAGCTCTAATTTTTTCTTTTGAAAGAT
CATTCGTACACTGGTTCCTCGTTCGCGGACTGGGTCCAAATAACGCTCGC
TTTAACGACTTATTATTCCATGAAGAAGCTTTAAAATAAAGTGAAAACAA
ACTGAAAGAAGGACTTCAAGCTAATCTACGAGATGGTCTAAAAGGATTTA
TGTAAAAACCAAAAGTAAGTGAGAAAAGTGAAAAATGAGTTTGGCGTTTG
TGCACTGGGCACCCCCCTCTACCCCTAGGGCTAGGCCGTGGCCAGTGGAT
GGTTAAAATGTTCAAAAATAAAGAAAAAAATCAAAATGTCTGTGACCAAG
CTTTGGCAATTGGTTTTGGTCAATTTGAGGGTGCTGAATCCGAATTTGAA
TAATACCATTGTTAATGTTTTAGCGTAATTTGTGATTTTTTGCGTTTCCA
GGCAATCTGGCTTGAAGGCTTGAAATATCATGATTTTTGGGGGGTCTTAA
AATTAAAAAAAAGACCTACACCACGTGATATATATACATAGTTTGCACCC
CCCCCTTTTTAATAGGGGGGGATGCCAACTTTCTGGAGGGCCTTTGTAGG
GGGGGTACCGAGATCTGCCGAAAAAACTAGGGGGGATGGGAATGTAGGGG
GGGATCAAATAAAAAAGGGGGGGTTTGGAAATTTTGGTCAATTTTCTAAT
CAAATACAAGTAAGTTAGTTATATTCTGTCATTGTTGGCTCGTGACTATA
ATACTTCATACTCTTTCTTGTTGATAATTTTGCTGGTAGGCGGGAAAGCG
AGTTTCCTTCGAAACGGATTTTCTGTAAAAAAAAAAGGGGGGATAAGATT
TCATTACAAAAGGGGGGGATGGGTATATAGGGGGGGATGAAATAAACCTA
GGGGGGTTCATACCCCTCTGCAAACTATGATATATAGCTCTTCAAACTGA
GCAAAAAATGTATTATATCAAAGTCCCAACTTCTCTAGCTAGATCAAAAG
TTATTGGCCTATTTTTGGTCAAAAACTGATGGAAAACAGGGAATTTTCCC
ACGATTTGCATAATTTATGCAAAATTGAACACCTTTTACCCACATGGCCC
CTTCAAATAACGTCAATCGTGGTAATCAAACTTGATCTCAAAATATTCTT
TAAACCCTTCTCCCATCACTCACTATAAATATTCCATCATTGTTTTGTCA
GCCATCTATATTTTTGCTATGGCTCGCATGCATAGTTTACATTTAAAAAT
AACGGAGATAATTTCTAAACTTTTCCACCAATAATCCTGGAATTTTTTAT
CTCCATAATATAAAGCGACAGAAAAAACCGGCTGTCTGCAAAAATTTTTG
GGCTGCGCGGACCGTCAAAGAAAGAGAACCCGAGGCATAAACATAGGGCT
GTTTGTTATGGTTTTCAAAACAGCAAAAGCGACCAAAAACAAACATGCCA
AAGTAACATTTGGCATGGAATGGACTTCTCTAAAATTGATTTTTCTGGTG
AAAATTCCTTTGCCATGAAAAAACATCAACAAATTATACTCATACTCCCC
CCCCCCTAAACGTCCATTTGACGTTCTCTATGGCAAGTCTGAGTTTGGAA
GGCTCCCCTTAGTCACACTAGGAAATCAAGCTTTCAGAAAAAACATCAGT
CATCTACAGGATGTATTTGCAACAACAAAGATGAGAGTTATCTGAACAAA
GTTCAAGATCCCCAATTTAATCACACTCACGCTGCTCACATCTTGAGATC
TTTTTCTTGTGTGTGCGTGATTGACATGTCAAAGTTACCAAGTGTCGGTA
TCAGATCTCACATCTTTTTATTGGGAAGTTGTTCTTCAAATTAGTTTTCA
AGGTTGGCTTGGTTCAAATTTTTTCATCTATAGCTCAAAAGGTAATTTTC
CCTGTTTCATTCGGGAGAATGTAACGGTCTTTTGAATAATAAATTACTCC
AGCCAGTACAAACATATTGAATTTTCTTGTACCTTAGTAACAGCTGTGTT
GTAAAAGACAAATCAATTAAATGACGTTTCTGCTGGAGTTCATTAGTTCA
TCTAAGCCTACTCCCAAACCCTGTGTAATATTTGGTTAATACTTGTTAAT
AATTATTTGTTTATGATCGCAGAGAGCTGTTTCATTTTTTTCATCTGGTA
AACTAAAGTTTGTGAGTGAATTTTAGGCCAAGATAAAAAGTAGGTTTGTT
TTGGGAAATGTAGACAACAAAAACATATATCACTCATGCTAAAATTGCTG
TAATTCTTAAATCTTAATTGAACTAGTTTTAAGTCACTTTACAAGTTTTA
TTTTTCATTTTTAGGTGGAAAGGCTTTTGGCCAACTCAAAAAACAACAAG
AATTGAGTTTAGATGAAATTAACAAGGTAAGCCATTAACAGTATTCTGAT
CTATACCTTCTAGTAATTTAATTTTAGTCTTTCACAGAACTTTTCATATC
GATTACCTTAATTTGGATTAAAATAGCTCTATTTTTAAATCNTTAATCTT
TCACAGAACTTTTCATATTGATTACCCTAATTTGGATTAAAGTAGCTCTA
TTTTTAAATCCTATTTCAAAGGAGGACATGATCCATTCAGAAGCAATTCA
AAGATTATTTGAAGTCCTTTGAAATGAAAACTGTTTTTAAAGCCTATTTA
GGATTATGGGCCTATTTCTATTAAGGATTTCCTTTCCATTAAGCACAATT
TTTAAGTAGTTGTAACCCATATATATATTTTTTTTATTTTGACATATATT
CTTTACTCCATCTTCTAACTACCGTTTTTTATTAAAACACATTACTTTTC
ACTCATTAAAAAAACACCTGGGATTGCGATTTATTGGGTCTATAACAAGC
CTTACAGTATGATTGATTTCTACGTTTATTTAGTTTTTTTAGAAGATTTT
ATTCAAACCTTCTGTCACAGCAATTAAAATGTGATAAAAATGAAAGTAAA
ATAATTGTATTTTTTCTTCTTAACAGACTTATTTAGAAGATGAAGATTAT
CAAGATGAAGAAGAATATCCAGATCTCCAAGGATCTTTGGTTACCTATAA
AAGTAAGTCACCATTCTTCATATGTTGCCTTTCAGAGAATAGGAGGTGAT
CTTGTATTTCCTTGATTGGCTTTTGAAAGAAAAAGCTTTTGCAGAACCAT
ATTTTAGGGAAAATTATATTTTTTCTCCTTAGAAAAAGTTATGATACTAC
AATGCAAATGCTAACATTTAGGATTTGTAAAGAAAAACGTAATTCCTTTC
AAGTGGATCAAAAGTTTAAGGCTTCAAAAAGAGAATAATTCCAACTTTTT
CATGTTTGGGTGTCTGCTTTGGTTAAGATTAACAATGACTGGGTCCTAAT
GAAAAGAAAAATATTTTAATTTTCAGAACAATTTATGGAGTTTGATTTGG
ACAACTCTGGTGATATTGGTAAGTTCATTCACTACTCAGTGTTTGATTGC
TGGTTTAAATTCGCTATTAGAAGTAACAACTGACTCCGATACCGAAAGAT
CTTACCCATATTTTTTATATCTTCTGTAGTATCGTCTAAGCTTATTTCTT
TTTTCCGATAATTTTGAGTTTAGTTCTATTCCAATCAATGTTTTTTGGAC
CTACCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCTGTT
GGTCCGTCCGTTTGTTCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCA
GGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGG
CAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGCAAAAATTTATTTGG
GCAAAGTTGGGCCAAAAACTGCCTAAAAATAGGGTTTTTTGGACTTTGTG
CAAAATCCTGTCATTACTTCTTTCTGATTTTTTGTACAAAGTTGGAGGGC
AAGATTCCTTAAAGAATGGCTGAAGTGGTTTTTGCTGGAAAATTCTTATT
CGCCTTAAAAAACGGATTTTCGTATTTTTGGGGAAATTCCCTTTAACCAA
ATAAGAAAATATAGCTTTTCTCAATATTGACTCATAATTTTTTCTGATTC
TTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGAATAAGCCAGAT
TTTTAAGGAAAATTTTTTTGGGCAAATTTGGGCCAAAAACAGCTTAAAAG
GTTTTTTGGGCCTGAATGGCTTAAGTGATTTTCGTATTTGGGGAAATTCC
TTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTCCATTCTG
AATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAA
TCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTTGTCTAGACTTGATG
GAGTTGAAAATGATGATGGAGAAATTAGGCCAAGCCAAAACTCATTTAGA
ATTAAAGAAAATGATTGCTGAAGTCGATCGTGAGAATAGAGGTATGATAT
TCTTTTTCATTGAAAATTTTCATTGATTATTTACCCTTAAGACTATTTAT
TTCACGCTGATGAAATCATCGAGACGAAAAAATGGAAAATTAAAATGAAC
GATTTACTCGTATCGTTTAATCTTTTGGAACAAATTCTAAAGAAATAGGC
GTGTCGTTTTTTGAATTTTAAATCAAAGAAGATAAAAAGCCTTTCAAAAT
GACACATTTCCATGTTTTTAGCATGTTGCTTCATAGACTTCGTGTTATTT
CATGTTTTCTTGACATTCAATGCGTCATCGTTCAACATTTTGATGTGTTT
GATCTAACAAATTTACTTTGTTTACATTCCGCAGGTGCAATTTCGTACAA
TGATTTCTTGTTCATGATGTTAGGAAAGAAAAGCTCTGTCCTTAAGCTGT
AAGTTTTTACAAAATTCTTTCACGTTGTAAGGAATCTCGATACTTACGTA
CAAGGTTGAAGTGATGCCCATCGGATGAATTTTAAAATCGCCTGATCTTC
GAGTCTCAGAAATTTCTTCAAAAACGTTGATACTGAACAAAATTTCCAGC
TCAAACTGTGTACCGAAGAATCCTAAATTTGCGGTTGTAAGAAAATTGTT
TCTTACAAAAAACTCGTAAGCCAATGGTTTATAATAAATGGAAGAATATT
CATACTGAGAATGTCGAATCAGACTACGCTATGCACTTTTCCAAGGTTCA
GAGAGGAGGAGTAATCAATGTTTCGTTTACTAATCCAAGATAATCCTTAC
TTTCAGGATTAAATTTCACGTTTGAAACTGTTTCGTTGTTCAGACGTGAA
ATACAGTATTTGCTTAGTTCAAAATAATGTCAATTTTTCTCGACCTTTTA
AAGACGGGAAATGGTTTATTTACGTATAGTTAGTTTCTTGCAAATCAAAC
ATTTCAAATCCCATACATACCTTAGAATCAAATGTCTCACTTTGCAACAC
GCAACTAAAATTCTTTTCCAGCTAATTACGAAATCACACTTCAGTTTAGC
AAATAAAGAGAGATTCAAATCATCCTTCAGTCACAGTCAGACACGGAGTA
AGATAAAAAATTTATGAACTTAAATCTTTTTTTCTACAGAATTTTGAAGT
TCGAAAAAGCGATGGCTGGACCTGAAAAGAAAACAGGTGTCGCTCCGAAA
CGAGACCTTTCATCACTCCCTTGAACTACCACGAAGCANAACAGGTGTCG
CTCCGAAACGAGACCTTTCATCACTCCCTTGAACGACCACGAAGCATTTT
TTCATATTATCCATACAACTGCTCATTACAATCTGATGTTTGCTGTACTT
TTATATCGAATACTCAACTTGTCACAAAGAATTCCATGCAACATTATAAA
CCAGTACCAGAAGTATAAAAGGGTCCCTTCGTAAGCGTCGAACATGTGAC
ATTAAATCAGCGCTTTTATCATTTATTTCACCATGCAATTTTATTATTAT
GTATAATCAAAGCAATCTTATTATTATCGTGTAATTGTAAATATTTTATT
AGGGTATTACGTTTCATTGTATTATTTTCCCCTAGAACAAACTTTCGACC
AGACATTTTGATATTAAACCGAAGCTTGG

Coding sequence (CDS) from alignment at scaffold_288:238015..245843-

>TCONS_00057351 ID=TCONS_00057351|Name=TCONS_00057351|organism=Clytia hemisphaerica|type=CDS|length=3552bp|location=Sequence derived from alignment at scaffold_288:238015..245843- (Clytia hemisphaerica)
GTGTCGCTCCGAAACGAGACCTTTCATCACTCCCTTGAAATTTTGAAGTT
CGAAAAAGCGATGGCTGGACCTGAAAAGAAAACAGGTGCAATTTCGTACA
ATGATTTCTTGTTCATGATGTTAGGAAAGAAAAGCTCTGTCCTTAAGCTA
CTTGATGGAGTTGAAAATGATGATGGAGAAATTAGGCCAAGCCAAAACTC
ATTTAGAATTAAAGAAAATGATTGCTGAAGTCGATCGTGAGAATAGAGAA
CAATTTATGGAGTTTGATTTGGACAACTCTGGTGATATTGACTTATTTAG
AAGATGAAGATTATCAAGATGAAGAAGAATATCCAGATCTCCAAGGATCT
TTGGTTACCTATAAAAGTGGAAAGGCTTTTGGCCAACTCAAAAAACAACA
AGAATTGAGTTTAGATGAAATTAACAAGATGTCTGATCATCAAGGTGTCG
CTCCGAAACGAGACCTTTCATCACTCCCTTGAAATTTTGAAGTTCGAAAA
AGCGATGGCTGGACCTGAAAAGAAAACAGGTGCAATTTCGTACAATGATT
TCTTGTTCATGATGTTAGGAAAGAAAAGCTCTGTCCTTAAGCTACTTGAT
GGAGTTGAAAATGATGATGGAGAAATTAGGCCAAGCCAAAACTCATTTAG
AATTAAAGAAAATGATTGCTGAAGTCGATCGTGAGAATAGAGAACAATTT
ATGGAGTTTGATTTGGACAACTCTGGTGATATTGACTTATTTAGAAGATG
AAGATTATCAAGATGAAGAAGAATATCCAGATCTCCAAGGATCTTTGGTT
ACCTATAAAAGTGGAAAGGCTTTTGGCCAACTCAAAAAACAACAAGAATT
GAGTTTAGATGAAATTAACAAGATGTCTGATCATCAAGGTGTCGCTCCGA
AACGAGACCTTTCATCACTCCCTTGAAATTTTGAAGTTCGAAAAAGCGAT
GGCTGGACCTGAAAAGAAAACAGGTGCAATTTCGTACAATGATTTCTTGT
TCATGATGTTAGGAAAGAAAAGCTCTGTCCTTAAGCTACTTGATGGAGTT
GAAAATGATGATGGAGAAATTAGGCCAAGCCAAAACTCATTTAGAATTAA
AGAAAATGATTGCTGAAGTCGATCGTGAGAATAGAGAACAATTTATGGAG
TTTGATTTGGACAACTCTGGTGATATTGACTTATTTAGAAGATGAAGATT
ATCAAGATGAAGAAGAATATCCAGATCTCCAAGGATCTTTGGTTACCTAT
AAAAGTGGAAAGGCTTTTGGCCAACTCAAAAAACAACAAGAATTGAGTTT
AGATGAAATTAACAAGATGTCTGATCATCAAGGTGTCGCTCCGAAACGAG
ACCTTTCATCACTCCCTTGAAATTTTGAAGTTCGAAAAAGCGATGGCTGG
ACCTGAAAAGAAAACAGGTGCAATTTCGTACAATGATTTCTTGTTCATGA
TGTTAGGAAAGAAAAGCTCTGTCCTTAAGCTACTTGATGGAGTTGAAAAT
GATGATGGAGAAATTAGGCCAAGCCAAAACTCATTTAGAATTAAAGAAAA
TGATTGCTGAAGTCGATCGTGAGAATAGAGAACAATTTATGGAGTTTGAT
TTGGACAACTCTGGTGATATTGACTTATTTAGAAGATGAAGATTATCAAG
ATGAAGAAGAATATCCAGATCTCCAAGGATCTTTGGTTACCTATAAAAGT
GGAAAGGCTTTTGGCCAACTCAAAAAACAACAAGAATTGAGTTTAGATGA
AATTAACAAGATGTCTGATCATCAAGGTGTCGCTCCGAAACGAGACCTTT
CATCACTCCCTTGAAATTTTGAAGTTCGAAAAAGCGATGGCTGGACCTGA
AAAGAAAACAGGTGCAATTTCGTACAATGATTTCTTGTTCATGATGTTAG
GAAAGAAAAGCTCTGTCCTTAAGCTACTTGATGGAGTTGAAAATGATGAT
GGAGAAATTAGGCCAAGCCAAAACTCATTTAGAATTAAAGAAAATGATTG
CTGAAGTCGATCGTGAGAATAGAGAACAATTTATGGAGTTTGATTTGGAC
AACTCTGGTGATATTGACTTATTTAGAAGATGAAGATTATCAAGATGAAG
AAGAATATCCAGATCTCCAAGGATCTTTGGTTACCTATAAAAGTGGAAAG
GCTTTTGGCCAACTCAAAAAACAACAAGAATTGAGTTTAGATGAAATTAA
CAAGATGTCTGATCATCAAGGTGTCGCTCCGAAACGAGACCTTTCATCAC
TCCCTTGAAATTTTGAAGTTCGAAAAAGCGATGGCTGGACCTGAAAAGAA
AACAGGTGCAATTTCGTACAATGATTTCTTGTTCATGATGTTAGGAAAGA
AAAGCTCTGTCCTTAAGCTACTTGATGGAGTTGAAAATGATGATGGAGAA
ATTAGGCCAAGCCAAAACTCATTTAGAATTAAAGAAAATGATTGCTGAAG
TCGATCGTGAGAATAGAGAACAATTTATGGAGTTTGATTTGGACAACTCT
GGTGATATTGACTTATTTAGAAGATGAAGATTATCAAGATGAAGAAGAAT
ATCCAGATCTCCAAGGATCTTTGGTTACCTATAAAAGTGGAAAGGCTTTT
GGCCAACTCAAAAAACAACAAGAATTGAGTTTAGATGAAATTAACAAGAT
GTCTGATCATCAAGGTGTCGCTCCGAAACGAGACCTTTCATCACTCCCTT
GAAATTTTGAAGTTCGAAAAAGCGATGGCTGGACCTGAAAAGAAAACAGG
TGCAATTTCGTACAATGATTTCTTGTTCATGATGTTAGGAAAGAAAAGCT
CTGTCCTTAAGCTACTTGATGGAGTTGAAAATGATGATGGAGAAATTAGG
CCAAGCCAAAACTCATTTAGAATTAAAGAAAATGATTGCTGAAGTCGATC
GTGAGAATAGAGAACAATTTATGGAGTTTGATTTGGACAACTCTGGTGAT
ATTGACTTATTTAGAAGATGAAGATTATCAAGATGAAGAAGAATATCCAG
ATCTCCAAGGATCTTTGGTTACCTATAAAAGTGGAAAGGCTTTTGGCCAA
CTCAAAAAACAACAAGAATTGAGTTTAGATGAAATTAACAAGATGTCTGA
TCATCAAGGTGTCGCTCCGAAACGAGACCTTTCATCACTCCCTTGAAATT
TTGAAGTTCGAAAAAGCGATGGCTGGACCTGAAAAGAAAACAGGTGCAAT
TTCGTACAATGATTTCTTGTTCATGATGTTAGGAAAGAAAAGCTCTGTCC
TTAAGCTACTTGATGGAGTTGAAAATGATGATGGAGAAATTAGGCCAAGC
CAAAACTCATTTAGAATTAAAGAAAATGATTGCTGAAGTCGATCGTGAGA
ATAGAGAACAATTTATGGAGTTTGATTTGGACAACTCTGGTGATATTGAC
TTATTTAGAAGATGAAGATTATCAAGATGAAGAAGAATATCCAGATCTCC
AAGGATCTTTGGTTACCTATAAAAGTGGAAAGGCTTTTGGCCAACTCAAA
AAACAACAAGAATTGAGTTTAGATGAAATTAACAAGATGTCTGATCATCA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036142XLOC_036142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057351-exon-scaffold_288-1575043694:245626..245843TCONS_00057351-exon-scaffold_288-1575043694:245626..245843Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:241668..241729TCONS_00057351-exon-scaffold_288-1575043694:241668..241729Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:240992..241067TCONS_00057351-exon-scaffold_288-1575043694:240992..241067Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:240626..240667TCONS_00057351-exon-scaffold_288-1575043694:240626..240667Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:239603..239701TCONS_00057351-exon-scaffold_288-1575043694:239603..239701Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:239196..239259TCONS_00057351-exon-scaffold_288-1575043694:239196..239259Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:238458..238504TCONS_00057351-exon-scaffold_288-1575043694:238458..238504Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1575043694:238015..238399TCONS_00057351-exon-scaffold_288-1575043694:238015..238399Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:245626..245843TCONS_00057351-exon-scaffold_288-1510915933:245626..245843Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:241668..241729TCONS_00057351-exon-scaffold_288-1510915933:241668..241729Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:240992..241067TCONS_00057351-exon-scaffold_288-1510915933:240992..241067Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:240626..240667TCONS_00057351-exon-scaffold_288-1510915933:240626..240667Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:239603..239701TCONS_00057351-exon-scaffold_288-1510915933:239603..239701Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:239196..239259TCONS_00057351-exon-scaffold_288-1510915933:239196..239259Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:238458..238504TCONS_00057351-exon-scaffold_288-1510915933:238458..238504Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1510915933:238015..238399TCONS_00057351-exon-scaffold_288-1510915933:238015..238399Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:245626..245843TCONS_00057351-exon-scaffold_288-1491911889:245626..245843Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:241668..241729TCONS_00057351-exon-scaffold_288-1491911889:241668..241729Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:240992..241067TCONS_00057351-exon-scaffold_288-1491911889:240992..241067Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:240626..240667TCONS_00057351-exon-scaffold_288-1491911889:240626..240667Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:239603..239701TCONS_00057351-exon-scaffold_288-1491911889:239603..239701Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:239196..239259TCONS_00057351-exon-scaffold_288-1491911889:239196..239259Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:238458..238504TCONS_00057351-exon-scaffold_288-1491911889:238458..238504Clytia hemisphaericaexon
TCONS_00057351-exon-scaffold_288-1491911889:238015..238399TCONS_00057351-exon-scaffold_288-1491911889:238015..238399Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057351-proteinTCONS_00057351-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:238015..245843 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
148.654	134.193	375.971	381.97	227.807	173.651	232.366	235.839	238.66	233.687	214.654	149.617	218.858	190.411	150.885	152.575	187.028	204.421	155.626	177.729	180.654	175.784	134.849	142.174	227.622	212.47	174.492	164.758	189.902	181.049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00057351 vs. Swiss-Prot (Human)
Match: AIF1L (Allograft inflammatory factor 1-like OS=Homo sapiens GN=AIF1L PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.876e-29
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 2 
Query:  215 QGGKAFGQLKKQQELSLDEINKTXXXXXXXXXXXXXXXXXGSLVTYKKQFMEFDLDNSGDIDXXXXXXXXXXXGQAKTHLELKKMIAEVDRENRGAISYNDFLFMMLGKKSSVLKLILKFE-KAMAGPEKKTGVAPKRDLSSLP 643
            QGGKAFG LK +QE  L EIN+ +L D+ Y DEE  P+    L  +K+++MEFDL+N G+IDLM LK MMEKLG  KTHLE+KKMI+EV       ISY DF+ MMLGK+S+VLKL++ FE KA     K  G  P+RD++SLP
Sbjct:   10 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPE---KLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIASLP 150
The following BLAST results are available for this feature:
BLAST of TCONS_00057351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIF1L6.876e-2956.25Allograft inflammatory factor 1-like OS=Homo sapie... [more]
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