Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2427bp tcgtaattttttttatttattcatccAAGAAGATTTCTGTCTGAACTTCA CTTCTAGAACATCGAGAACCATTGCTAAGAGATACCCTTCACAACAAAAC TTTAAAGATAATCAAAGATGACATTTTGTAAATTTCTTCTACTCGTGTTG AAATTTCCTTTGATTTTCGGTAAATATGAAACCCCTGATATGCCGTTCCT CCCCTTCAAAATGGAAAGTCAAAACACGGCCATTTCCGGACCTTCACCGT GGTTGATTCAAGAATTCACTTCCAAACACAAATGCTTCAAAACTTGTCTT CAAAACTTCACGCTTTGTGGGCATGTTCAATATAAAGAGATTTCTGCTAA TCGTTGGTTTTGTCAActttatgacgtcattgaaaACCTGTTCGATTACT TGGTGTCACAGATAGGTGAGACTTTGTATTCAGCGCAACACCAAGACCTT GACTGCAGCGATTGGAAGGACAGAGGGTACACAATACCAGGAACTTATTG GATCTTTCGCAACAGAACAAAGATGAGAACAGTTTGCAATACAGGAAATC CACCTTGGACCCTCATCCAAAAGCGAACGAGTGCGTACGACTTCAACCGC TCGTGGGAAGAATACAAAAATGGGTTTGGAGATCCGGAAACTAATTTTTG GATCGGGAACGACAAAATCCACAAGTTGACGTACGGTCGAGAGATGCAAA TCCGTTTCACTGGTGAGCCCTATAGTAAGCCCAAGAAATTTTGCATTTAC ACCGGTTTCTATATTGAGGGCGAAGAAAATAAATACCGCCTGCATACGGG TGCTCATACAGGCGGTAGTGATACTTACGCCGGTGATTGGGCTCTTCACA ATGGTTCTCTTTTTTCGGTGCGCTCTCAAGATAATGATGGTTGGGCAAAC CATAATTGTGCTGTTAGGTTCAAGTTAAATGGTTGGTGGCTGGGTATAGT AGAGGATGGAACTCCTTACTGTGCTGAACTTGCATTCAATGGTGATTGGG ACGGACAGAGCCCCGATACTGGACCCTTTTGGAAGTCTTTAGACGGATAT AAGTCCTTGAAGGCTACAACAATGGAAATTCGATTCAAAGAACTTTAACA TGTTCTTCCAATTGATAAATTGAGTAATTGGGCgagacaaatttaatttt ttaatttattgttctacgggaaaaccttcagaaaaatattggtTGGTCGG TATAATAGaaataagtttttcaaaatctaggTTTGGTAGGTCAAGTTCTA AAACTCTAGACTTTTCTTCTTACTCGATGAGTGGACTTTCGTGCTTTTCC ATTGTTCAAATTTCAATTCATCCAATTTCTGGGATGAATTTACACTTTTT CAACCTGTTCAGTtaaaaaaactgcaaaaaactTGTAAAGTCCATCCTTC AGCTTTGCaaattaattattattatttttctcgatatttgaaaaaaaaac agggtcggtcgggcccgtagaacaatgATTTATTTTGGCTCCGTATAAGA TACTTAGAAGTTTCATGCCATAATAAATGATGAcgttatttaaaggtttt atttttacataagtgttcccgtttcatatcagacacatatttcatatcag gacagtgacTGATTGTTAtaatatgctgatataagcgataaatatttttc ttttcccctttctgaccaatcttgctccgcacccgtgtcaatccaatgtg aaaaagcttgtgaattaaaattGATGAATAAGCAAACGATATATAGATAG GCGCTGTGATATAGTGGTCATTGACCTTGGTTGCTGCACGGGCGACTGAG GTTCGATTCCCACTCGCAGCGGTTCACTTGCCGAATGAATGAACCTTCAA CCCATGCCATGTGAGGGGAATTGGGTAGTCAGTCCAAGGGGCTGACGGGG CGCTCATTGAAAGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTG CAACTCAACCAAATTGACAATAGAAATATCACTGTTATTTAAGCCACGAT AAACTTTCAATATTCATAAATGAAAAGGTGTTGTGACGAGTGTGGGTATT TTGTTGAGGTAGAAGGAAACAAACAAAAACCTCATGTTGAGAAAAGACTC TAAAATAATAATGAACATGGAATATATTAATTAAAAAAAAAACTTGCACC AAATTTTACTGAGCACTTTTAGACTAAATTCTGCGTATTGTAACCTTTTA TTTATTATCCACGATTTTTAATTCTTAGATTAATTTAAACTATCCAGGAA TATAATAATTTTGATCTTATTCGAAATATCTTAACAGTTTCACGGTTTGA ACTACCTTATTGGGGGAAAAATGTTGTTGAGTTATGAGttatttagtcgg gttttttttcgtcggggaaaaatttcgtcacctagaggcattttcgtcac tttcccccgaccaaaatttcaaattcg Run BLAST on NCBI protein sequence of TCONS_00057358-protein >TCONS_00057358-protein ID=TCONS_00057358-protein|Name=TCONS_00057358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MTFCKFLLLVLKFPLIFGKYETPDMPFLPFKMESQNTAISGPSPWLIQEF TSKHKCFKTCLQNFTLCGHVQYKEISANRWFCQLYDVIENLFDYLVSQIG ETLYSAQHQDLDCSDWKDRGYTIPGTYWIFRNRTKMRTVCNTGNPPWTLI QKRTSAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGE PYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGDWALHNGSLFS VRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDWDGQSPD TGPFWKSLDGYKSLKATTMEIRFKEL Run BLAST on NCBI transcript from alignment at scaffold_288:368643..371295- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica) TCGTAATTTTTTTTATTTATTCATCCAAGAAGATTTCTGTCTGAACTTCA
CTTCTAGAACATCGAGAACCATTGCTAAGGTATGTAGGGTATTTTTATTA
ATGACTTCTTTGAGTTTTGTTAACTACTCATAAATATTTTTGACAACGAT
TGAATTTAGTGGTTTCTTTGTTTTCGAGTGGTATATTTTTTAAGGCCTCT
GTTACTTTATTTTTCTTTTTTTATGTTATATTGTGCTCTCTTTAAAATTA
AGAGGTTAATATTTTCTTGACTGATATTGAGAAATTGCTTTTTTGTTTTC
TCTAGAGATACCCTTCACAACAAAACTTTAAAGATAATCAAAGATGACAT
TTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTTCGGTAAA
TATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAAGTCAAAA
CACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTCACTTCCA
AACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTGTGGGCAT
GTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAACTTTATGA
CGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGTGAGACTT
TGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAAGGACAGA
GGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAACAAAGAT
GAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATCCAAAAGC
GAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAAAAATGGG
TTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAATCCACAA
GTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAGCCCTATA
GTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGAGGGCGAA
GAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTAGTGATAC
TTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCGGTGCGCT
CTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAGGTTCAAG
TTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTTACTGTGC
TGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGATACTGGAC
CCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTACAACAATG
GAAATTCGATTCAAAGAACTTTAACATGTTCTTCCAATTGATAAATTGAG
TAATTGGGCGAGACAAATTTAATTTTTTAATTTATTGTTCTACGGGAAAA
CCTTCAGAAAAATATTGGTTGGTCGGTATAATAGAAATAAGTTTTTCAAA
ATCTAGGTTTGGTAGGTCAAGTTCTAAAACTCTAGACTTTTCTTCTTACT
CGATGAGTGGACTTTCGTGCTTTTCCATTGTTCAAATTTCAATTCATCCA
ATTTCTGGGATGAATTTACACTTTTTCAACCTGTTCAGTTAAAAAAACTG
CAAAAAACTTGTAAAGTCCATCCTTCAGCTTTGCAAATTAATTATTATTA
TTTTTCTCGATATTTGAAAAAAAAACAGGGTCGGTCGGGCCCGTAGAACA
ATGATTTATTTTGGCTCCGTATAAGATACTTAGAAGTTTCATGCCATAAT
AAATGATGACGTTATTTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTT
CATATCAGACACATATTTCATATCAGGACAGTGACTGATTGTTATAATAT
GCTGATATAAGCGATAAATATTTTTCTTTTCCCCTTTCTGACCAATCTTG
CTCCGCACCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGA
TGAATAAGCAAACGATATATAGATAGGCGCTGTGATATAGTGGTCATTGA
CCTTGGTTGCTGCACGGGCGACTGAGGTTCGATTCCCACTCGCAGCGGTT
CACTTGCCGAATGAATGAACCTTCAACCCATGCCATGTGAGGGGAATTGG
GTAGTCAGTCCAAGGGGCTGACGGGGCGCTCATTGAAAGCGTCTATAGTT
GCGAAAATAGGCCTCAAAGCCTCCTGCAACTCAACCAAATTGACAATAGA
AATATCACTGTTATTTAAGCCACGATAAACTTTCAATATTCATAAATGAA
AAGGTGTTGTGACGAGTGTGGGTATTTTGTTGAGGTAGAAGGAAACAAAC
AAAAACCTCATGTTGAGAAAAGACTCTAAAATAATAATGAACATGGAATA
TATTAATTAAAAAAAAAACTTGCACCAAATTTTACTGAGCACTTTTAGAC
TAAATTCTGCGTATTGTAACCTTTTATTTATTATCCACGATTTTTAATTC
TTAGATTAATTTAAACTATCCAGGAATATAATAATTTTGATCTTATTCGA
AATATCTTAACAGTTTCACGGTTTGAACTACCTTATTGGGGGAAAAATGT
TGTTGAGTTATGAGTTATTTAGTCGGGTTTTTTTTCGTCGGGGAAAAATT
TCGTCACCTAGAGGCATTTTCGTCACTTTCCCCCGACCAAAATTTCAAAT
TCG Coding sequence (CDS) from alignment at scaffold_288:368643..371295- >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica) ATGACATTTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTT CGGTAAATATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAA GTCAAAACACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTC ACTTCCAAACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTG TGGGCATGTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAAC TTTATGACGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGT GAGACTTTGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAA GGACAGAGGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAA CAAAGATGAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATC CAAAAGCGAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAA AAATGGGTTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAA TCCACAAGTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAG CCCTATAGTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGA GGGCGAAGAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTA GTGATACTTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCG GTGCGCTCTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAG GTTCAAGTTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTT ACTGTGCTGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGAT ACTGGACCCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTAC AACAATGGAAATTCGATTCAAAGAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057358-exon-scaffold_288-1575043694:371217..371295 | TCONS_00057358-exon-scaffold_288-1575043694:371217..371295 | Clytia hemisphaerica | exon |
TCONS_00057358-exon-scaffold_288-1575043694:368643..370990 | TCONS_00057358-exon-scaffold_288-1575043694:368643..370990 | Clytia hemisphaerica | exon |
TCONS_00057358-exon-scaffold_288-1510915933:371217..371295 | TCONS_00057358-exon-scaffold_288-1510915933:371217..371295 | Clytia hemisphaerica | exon |
TCONS_00057358-exon-scaffold_288-1510915933:368643..370990 | TCONS_00057358-exon-scaffold_288-1510915933:368643..370990 | Clytia hemisphaerica | exon |
TCONS_00057358-exon-scaffold_288-1491911889:371217..371295 | TCONS_00057358-exon-scaffold_288-1491911889:371217..371295 | Clytia hemisphaerica | exon |
TCONS_00057358-exon-scaffold_288-1491911889:368643..370990 | TCONS_00057358-exon-scaffold_288-1491911889:368643..370990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_288 | supercontig | scaffold_288:368643..371295 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057358 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 4.899e-22 Identity = 75/220 (34.09%), Postives = 104/220 (47.27%), Query Frame = 1 Query: 451 DCSDWKDRGYTIPGTYWIFRNRTKMRTVC---NTGNPPWTLIQKRT-SAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGEPYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGD-WALHNGSLFSVRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDW---DGQSPDTGPFWKSLDGYK-SLKATTMEIR 1083
+C D DRGY + G + I+ + TV +T WT+ Q+R + DF R W YK GFG FW+GND IH LT ++R + +F Y F + E KY+L GA GGS AG+ HN + FS + QDND ++ NCA +F+ WW C NG + +S G W + GYK S K + M++R
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS---AGNSLTGHNNNFFSTKDQDND-VSSSNCAEKFQ-GAWWYAD-------CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 324
The following BLAST results are available for this feature:
|