TCONS_00057358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057358
Unique NameTCONS_00057358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2427bp
tcgtaattttttttatttattcatccAAGAAGATTTCTGTCTGAACTTCA
CTTCTAGAACATCGAGAACCATTGCTAAGAGATACCCTTCACAACAAAAC
TTTAAAGATAATCAAAGATGACATTTTGTAAATTTCTTCTACTCGTGTTG
AAATTTCCTTTGATTTTCGGTAAATATGAAACCCCTGATATGCCGTTCCT
CCCCTTCAAAATGGAAAGTCAAAACACGGCCATTTCCGGACCTTCACCGT
GGTTGATTCAAGAATTCACTTCCAAACACAAATGCTTCAAAACTTGTCTT
CAAAACTTCACGCTTTGTGGGCATGTTCAATATAAAGAGATTTCTGCTAA
TCGTTGGTTTTGTCAActttatgacgtcattgaaaACCTGTTCGATTACT
TGGTGTCACAGATAGGTGAGACTTTGTATTCAGCGCAACACCAAGACCTT
GACTGCAGCGATTGGAAGGACAGAGGGTACACAATACCAGGAACTTATTG
GATCTTTCGCAACAGAACAAAGATGAGAACAGTTTGCAATACAGGAAATC
CACCTTGGACCCTCATCCAAAAGCGAACGAGTGCGTACGACTTCAACCGC
TCGTGGGAAGAATACAAAAATGGGTTTGGAGATCCGGAAACTAATTTTTG
GATCGGGAACGACAAAATCCACAAGTTGACGTACGGTCGAGAGATGCAAA
TCCGTTTCACTGGTGAGCCCTATAGTAAGCCCAAGAAATTTTGCATTTAC
ACCGGTTTCTATATTGAGGGCGAAGAAAATAAATACCGCCTGCATACGGG
TGCTCATACAGGCGGTAGTGATACTTACGCCGGTGATTGGGCTCTTCACA
ATGGTTCTCTTTTTTCGGTGCGCTCTCAAGATAATGATGGTTGGGCAAAC
CATAATTGTGCTGTTAGGTTCAAGTTAAATGGTTGGTGGCTGGGTATAGT
AGAGGATGGAACTCCTTACTGTGCTGAACTTGCATTCAATGGTGATTGGG
ACGGACAGAGCCCCGATACTGGACCCTTTTGGAAGTCTTTAGACGGATAT
AAGTCCTTGAAGGCTACAACAATGGAAATTCGATTCAAAGAACTTTAACA
TGTTCTTCCAATTGATAAATTGAGTAATTGGGCgagacaaatttaatttt
ttaatttattgttctacgggaaaaccttcagaaaaatattggtTGGTCGG
TATAATAGaaataagtttttcaaaatctaggTTTGGTAGGTCAAGTTCTA
AAACTCTAGACTTTTCTTCTTACTCGATGAGTGGACTTTCGTGCTTTTCC
ATTGTTCAAATTTCAATTCATCCAATTTCTGGGATGAATTTACACTTTTT
CAACCTGTTCAGTtaaaaaaactgcaaaaaactTGTAAAGTCCATCCTTC
AGCTTTGCaaattaattattattatttttctcgatatttgaaaaaaaaac
agggtcggtcgggcccgtagaacaatgATTTATTTTGGCTCCGTATAAGA
TACTTAGAAGTTTCATGCCATAATAAATGATGAcgttatttaaaggtttt
atttttacataagtgttcccgtttcatatcagacacatatttcatatcag
gacagtgacTGATTGTTAtaatatgctgatataagcgataaatatttttc
ttttcccctttctgaccaatcttgctccgcacccgtgtcaatccaatgtg
aaaaagcttgtgaattaaaattGATGAATAAGCAAACGATATATAGATAG
GCGCTGTGATATAGTGGTCATTGACCTTGGTTGCTGCACGGGCGACTGAG
GTTCGATTCCCACTCGCAGCGGTTCACTTGCCGAATGAATGAACCTTCAA
CCCATGCCATGTGAGGGGAATTGGGTAGTCAGTCCAAGGGGCTGACGGGG
CGCTCATTGAAAGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTG
CAACTCAACCAAATTGACAATAGAAATATCACTGTTATTTAAGCCACGAT
AAACTTTCAATATTCATAAATGAAAAGGTGTTGTGACGAGTGTGGGTATT
TTGTTGAGGTAGAAGGAAACAAACAAAAACCTCATGTTGAGAAAAGACTC
TAAAATAATAATGAACATGGAATATATTAATTAAAAAAAAAACTTGCACC
AAATTTTACTGAGCACTTTTAGACTAAATTCTGCGTATTGTAACCTTTTA
TTTATTATCCACGATTTTTAATTCTTAGATTAATTTAAACTATCCAGGAA
TATAATAATTTTGATCTTATTCGAAATATCTTAACAGTTTCACGGTTTGA
ACTACCTTATTGGGGGAAAAATGTTGTTGAGTTATGAGttatttagtcgg
gttttttttcgtcggggaaaaatttcgtcacctagaggcattttcgtcac
tttcccccgaccaaaatttcaaattcg
Run BLAST on NCBI

protein sequence of TCONS_00057358-protein

>TCONS_00057358-protein ID=TCONS_00057358-protein|Name=TCONS_00057358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MTFCKFLLLVLKFPLIFGKYETPDMPFLPFKMESQNTAISGPSPWLIQEF
TSKHKCFKTCLQNFTLCGHVQYKEISANRWFCQLYDVIENLFDYLVSQIG
ETLYSAQHQDLDCSDWKDRGYTIPGTYWIFRNRTKMRTVCNTGNPPWTLI
QKRTSAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGE
PYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGDWALHNGSLFS
VRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDWDGQSPD
TGPFWKSLDGYKSLKATTMEIRFKEL
Run BLAST on NCBI

transcript from alignment at scaffold_288:368643..371295-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica)
TCGTAATTTTTTTTATTTATTCATCCAAGAAGATTTCTGTCTGAACTTCA CTTCTAGAACATCGAGAACCATTGCTAAGGTATGTAGGGTATTTTTATTA ATGACTTCTTTGAGTTTTGTTAACTACTCATAAATATTTTTGACAACGAT TGAATTTAGTGGTTTCTTTGTTTTCGAGTGGTATATTTTTTAAGGCCTCT GTTACTTTATTTTTCTTTTTTTATGTTATATTGTGCTCTCTTTAAAATTA AGAGGTTAATATTTTCTTGACTGATATTGAGAAATTGCTTTTTTGTTTTC TCTAGAGATACCCTTCACAACAAAACTTTAAAGATAATCAAAGATGACAT TTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTTCGGTAAA TATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAAGTCAAAA CACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTCACTTCCA AACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTGTGGGCAT GTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAACTTTATGA CGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGTGAGACTT TGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAAGGACAGA GGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAACAAAGAT GAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATCCAAAAGC GAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAAAAATGGG TTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAATCCACAA GTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAGCCCTATA GTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGAGGGCGAA GAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTAGTGATAC TTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCGGTGCGCT CTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAGGTTCAAG TTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTTACTGTGC TGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGATACTGGAC CCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTACAACAATG GAAATTCGATTCAAAGAACTTTAACATGTTCTTCCAATTGATAAATTGAG TAATTGGGCGAGACAAATTTAATTTTTTAATTTATTGTTCTACGGGAAAA CCTTCAGAAAAATATTGGTTGGTCGGTATAATAGAAATAAGTTTTTCAAA ATCTAGGTTTGGTAGGTCAAGTTCTAAAACTCTAGACTTTTCTTCTTACT CGATGAGTGGACTTTCGTGCTTTTCCATTGTTCAAATTTCAATTCATCCA ATTTCTGGGATGAATTTACACTTTTTCAACCTGTTCAGTTAAAAAAACTG CAAAAAACTTGTAAAGTCCATCCTTCAGCTTTGCAAATTAATTATTATTA TTTTTCTCGATATTTGAAAAAAAAACAGGGTCGGTCGGGCCCGTAGAACA ATGATTTATTTTGGCTCCGTATAAGATACTTAGAAGTTTCATGCCATAAT AAATGATGACGTTATTTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTT CATATCAGACACATATTTCATATCAGGACAGTGACTGATTGTTATAATAT GCTGATATAAGCGATAAATATTTTTCTTTTCCCCTTTCTGACCAATCTTG CTCCGCACCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGA TGAATAAGCAAACGATATATAGATAGGCGCTGTGATATAGTGGTCATTGA CCTTGGTTGCTGCACGGGCGACTGAGGTTCGATTCCCACTCGCAGCGGTT CACTTGCCGAATGAATGAACCTTCAACCCATGCCATGTGAGGGGAATTGG GTAGTCAGTCCAAGGGGCTGACGGGGCGCTCATTGAAAGCGTCTATAGTT GCGAAAATAGGCCTCAAAGCCTCCTGCAACTCAACCAAATTGACAATAGA AATATCACTGTTATTTAAGCCACGATAAACTTTCAATATTCATAAATGAA AAGGTGTTGTGACGAGTGTGGGTATTTTGTTGAGGTAGAAGGAAACAAAC AAAAACCTCATGTTGAGAAAAGACTCTAAAATAATAATGAACATGGAATA TATTAATTAAAAAAAAAACTTGCACCAAATTTTACTGAGCACTTTTAGAC TAAATTCTGCGTATTGTAACCTTTTATTTATTATCCACGATTTTTAATTC TTAGATTAATTTAAACTATCCAGGAATATAATAATTTTGATCTTATTCGA AATATCTTAACAGTTTCACGGTTTGAACTACCTTATTGGGGGAAAAATGT TGTTGAGTTATGAGTTATTTAGTCGGGTTTTTTTTCGTCGGGGAAAAATT TCGTCACCTAGAGGCATTTTCGTCACTTTCCCCCGACCAAAATTTCAAAT TCG

Coding sequence (CDS) from alignment at scaffold_288:368643..371295-

>TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica)
ATGACATTTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTT
CGGTAAATATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAA
GTCAAAACACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTC
ACTTCCAAACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTG
TGGGCATGTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAAC
TTTATGACGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGT
GAGACTTTGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAA
GGACAGAGGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAA
CAAAGATGAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATC
CAAAAGCGAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAA
AAATGGGTTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAA
TCCACAAGTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAG
CCCTATAGTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGA
GGGCGAAGAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTA
GTGATACTTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCG
GTGCGCTCTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAG
GTTCAAGTTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTT
ACTGTGCTGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGAT
ACTGGACCCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTAC
AACAATGGAAATTCGATTCAAAGAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036144XLOC_036144Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057358-proteinTCONS_00057358-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057358-exon-scaffold_288-1575043694:371217..371295TCONS_00057358-exon-scaffold_288-1575043694:371217..371295Clytia hemisphaericaexon
TCONS_00057358-exon-scaffold_288-1575043694:368643..370990TCONS_00057358-exon-scaffold_288-1575043694:368643..370990Clytia hemisphaericaexon
TCONS_00057358-exon-scaffold_288-1510915933:371217..371295TCONS_00057358-exon-scaffold_288-1510915933:371217..371295Clytia hemisphaericaexon
TCONS_00057358-exon-scaffold_288-1510915933:368643..370990TCONS_00057358-exon-scaffold_288-1510915933:368643..370990Clytia hemisphaericaexon
TCONS_00057358-exon-scaffold_288-1491911889:371217..371295TCONS_00057358-exon-scaffold_288-1491911889:371217..371295Clytia hemisphaericaexon
TCONS_00057358-exon-scaffold_288-1491911889:368643..370990TCONS_00057358-exon-scaffold_288-1491911889:368643..370990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:368643..371295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.042648 tpm) - - (26.0928 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381474 0.0749694 0.530686 0.570672 0.0936487 0.042648 0.295471 0.464202 0.320915 0.465777 0.222647 0.465461 21.4145 26.0928 18.7241 12.2152 1.59532 2.12015 16.7902 14.4087 5.062 4.99738 2.84242 3.27081 4.82816 5.33106 8.97275 7.01386 2.60897 1.42024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200140016001800200022002400Expect = 4.90e-22 / Id = 34.09SequenceFCN1
Match NameE-valueIdentityDescription
FCN14.899e-2234.09Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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